Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00513 * 2 1 4 4 C 1.38756 * 120.04967 * 0.24666 * 3 2 1 5 5 C 1.38124 * 119.94072 * 180.29799 * 4 3 2 6 6 C 1.38289 * 120.05524 * 359.47580 * 5 4 3 7 7 C 1.38239 * 120.10954 * 0.22792 * 6 5 4 8 8 C 1.50704 * 119.96999 * 180.02562 * 7 6 5 9 9 C 1.38167 * 120.05818 * 0.05062 * 7 6 5 10 10 C 1.50703 * 120.02759 * 179.97438 * 9 7 6 11 11 N 1.46503 * 109.47042 * 96.78001 * 10 9 7 12 12 C 1.36933 * 119.99838 * 93.72730 * 11 10 9 13 13 H 1.08005 * 119.99962 * 218.89893 * 12 11 10 14 14 C 1.38809 * 119.99983 * 38.90169 * 12 11 10 15 15 N 1.31620 * 120.00321 * 24.09934 * 14 12 11 16 16 Si 1.86805 * 119.99834 * 204.09726 * 14 12 11 17 17 H 1.48498 * 109.47269 * 59.99913 * 16 14 12 18 18 H 1.48501 * 109.47240 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46957 * 299.99798 * 16 14 12 20 20 C 1.46501 * 120.00145 * 273.72520 * 11 10 9 21 21 C 1.52996 * 109.47225 * 96.43650 * 20 11 10 22 22 C 1.50702 * 109.47398 * 180.02562 * 21 20 11 23 23 O 1.20822 * 119.99612 * 359.97438 * 22 21 20 24 24 O 1.34226 * 120.00189 * 179.97438 * 22 21 20 25 25 H 1.08995 * 109.46956 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47072 * 300.00150 * 1 2 3 27 27 H 1.09001 * 109.46801 * 60.00577 * 1 2 3 28 28 H 1.07999 * 120.03037 * 0.04934 * 4 3 2 29 29 H 1.08000 * 119.97161 * 179.75156 * 5 4 3 30 30 H 1.08002 * 119.94089 * 180.25351 * 6 5 4 31 31 H 1.08995 * 109.46926 * 88.98521 * 8 7 6 32 32 H 1.08993 * 109.47068 * 208.98961 * 8 7 6 33 33 H 1.09008 * 109.47068 * 328.98850 * 8 7 6 34 34 H 1.08998 * 109.47135 * 216.78203 * 10 9 7 35 35 H 1.08997 * 109.46862 * 336.78408 * 10 9 7 36 36 H 0.97000 * 120.00097 * 184.98536 * 15 14 12 37 37 H 1.08994 * 109.47181 * 216.44011 * 20 11 10 38 38 H 1.09009 * 109.46946 * 336.43784 * 20 11 10 39 39 H 1.09003 * 109.46979 * 299.99828 * 21 20 11 40 40 H 1.08996 * 109.47109 * 59.99871 * 21 20 11 41 41 H 0.96699 * 117.00125 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0015 7 6 4.0560 2.5170 -0.0005 8 6 5.5609 2.5981 -0.0004 9 6 3.4311 1.2847 0.0000 10 6 4.2537 0.0220 0.0005 11 7 4.3835 -0.4756 1.3723 12 6 3.5018 -1.4089 1.8483 13 1 3.1464 -1.3463 2.8663 14 6 3.0648 -2.4355 1.0226 15 7 3.7982 -2.8124 -0.0033 16 14 1.4359 -3.2823 1.3675 17 1 0.3375 -2.2845 1.3112 18 1 1.2004 -4.3364 0.3483 19 1 1.4750 -3.8998 2.7174 20 6 5.4567 0.0252 2.2348 21 6 4.9176 1.1531 3.1168 22 6 6.0216 1.6688 4.0036 23 8 7.1261 1.1835 3.9372 24 8 5.7780 2.6670 4.8671 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.2129 2.3203 0.0100 29 1 1.3341 4.5113 -0.0011 30 1 3.7923 4.6380 -0.0022 31 1 5.9225 2.6366 1.0271 32 1 5.9720 1.7196 -0.4976 33 1 5.8764 3.4967 -0.5306 34 1 3.7625 -0.7319 -0.6146 35 1 5.2434 0.2330 -0.4046 36 1 3.4607 -3.4790 -0.6219 37 1 5.8243 -0.7847 2.8648 38 1 6.2716 0.4042 1.6179 39 1 4.5500 1.9631 2.4867 40 1 4.1028 0.7742 3.7336 41 1 6.5173 2.9637 5.4152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607316026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -100.803594 kcal Electronic energy + Delta-G solvation = -25051.168115 eV Core-core repulsion = 21510.496410 eV Total energy + Delta-G solvation = -3540.671706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26013 -40.94718 -38.54952 -37.51281 -36.94770 -33.95377 -33.44505 -32.24137 -30.74195 -28.26822 -27.76698 -26.95468 -26.20303 -23.58104 -22.27219 -21.60728 -21.31311 -19.07197 -18.65934 -18.23094 -17.53110 -17.16208 -17.01655 -16.59205 -16.34540 -16.28827 -15.51131 -15.19419 -14.77491 -14.74595 -14.41607 -14.22394 -14.02426 -13.78579 -13.27871 -13.09253 -13.08164 -12.81019 -12.71391 -12.48807 -12.44392 -12.34996 -12.22956 -11.97345 -11.74033 -11.62966 -11.58708 -11.49007 -11.33769 -10.31321 -9.37132 -8.79479 -8.54165 -7.72944 -5.35035 0.58051 0.76329 1.26167 1.50160 1.51082 1.58516 2.20323 2.62236 2.74829 2.99669 3.41044 3.93693 4.05612 4.08394 4.16548 4.21411 4.29064 4.36228 4.42048 4.48006 4.57576 4.62758 4.71470 4.76949 4.79071 4.85151 4.90378 5.03184 5.04476 5.18366 5.36785 5.37212 5.64250 5.65021 5.70066 5.74827 5.78556 5.96685 6.17540 6.54006 6.85138 7.07072 7.26913 7.92226 8.46476 9.23308 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.008097 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.924770 B = 3457.095169 C = 4828.145471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.311 6.311 3 C 0.126 3.874 4 C -0.227 4.227 5 C -0.088 4.088 6 C -0.164 4.164 7 C -0.059 4.059 8 C -0.113 4.113 9 C -0.138 4.138 10 C 0.198 3.802 11 N -0.578 5.578 12 C -0.257 4.257 13 H 0.044 0.956 14 C 0.000 4.000 15 N -0.912 5.912 16 Si 0.929 3.071 17 H -0.248 1.248 18 H -0.304 1.304 19 H -0.291 1.291 20 C 0.166 3.834 21 C -0.124 4.124 22 C 0.493 3.507 23 O -0.549 6.549 24 O -0.512 6.512 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.247 0.753 37 H 0.029 0.971 38 H 0.049 0.951 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 15.089 1.516 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.224 6.224 3 C 0.079 3.921 4 C -0.246 4.246 5 C -0.106 4.106 6 C -0.182 4.182 7 C -0.060 4.060 8 C -0.169 4.169 9 C -0.141 4.141 10 C 0.072 3.928 11 N -0.298 5.298 12 C -0.387 4.387 13 H 0.062 0.938 14 C -0.199 4.199 15 N -0.555 5.555 16 Si 0.758 3.242 17 H -0.172 1.172 18 H -0.230 1.230 19 H -0.218 1.218 20 C 0.040 3.960 21 C -0.164 4.164 22 C 0.336 3.664 23 O -0.440 6.440 24 O -0.326 6.326 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.448 14.415 1.174 14.868 hybrid contribution -0.603 -0.764 0.455 1.075 sum -4.051 13.650 1.629 14.332 Atomic orbital electron populations 1.23185 0.79059 1.03575 1.01680 1.86373 1.21064 1.26957 1.87961 1.19172 0.92333 0.84741 0.95823 1.21391 1.00334 0.92308 1.10557 1.21111 0.94727 0.97031 0.97700 1.21115 0.93978 0.97862 1.05282 1.19745 0.96530 0.91600 0.98118 1.20894 0.90686 1.03113 1.02209 1.20193 0.91933 0.97199 1.04768 1.19552 0.95274 0.90875 0.87064 1.43765 1.31031 1.44551 1.10406 1.18816 1.19507 1.02284 0.98073 0.93814 1.25455 1.00269 0.95538 0.98610 1.70249 1.35420 1.31981 1.17816 0.86050 0.84094 0.77940 0.76103 1.17236 1.23045 1.21842 1.20547 0.89806 0.93174 0.92500 1.22047 0.95872 1.01089 0.97376 1.23647 0.88904 0.75866 0.77934 1.90681 1.26742 1.58331 1.68204 1.84544 1.47626 1.50002 1.50401 0.89454 0.92187 0.91445 0.84537 0.83373 0.83889 0.91663 0.92267 0.89345 0.92154 0.94520 0.94436 0.95263 0.93271 0.87630 0.88887 0.71425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.41 113.37 1.07 1.70 16 2 O -0.31 -13.06 8.26 -92.44 -0.76 -13.82 16 3 C 0.13 4.86 6.66 22.50 0.15 5.01 16 4 C -0.23 -6.93 9.04 22.37 0.20 -6.73 16 5 C -0.09 -2.26 10.04 22.25 0.22 -2.04 16 6 C -0.16 -4.38 9.70 22.28 0.22 -4.16 16 7 C -0.06 -1.90 4.72 -19.88 -0.09 -1.99 16 8 C -0.11 -3.19 9.16 71.24 0.65 -2.54 16 9 C -0.14 -5.47 5.26 -19.77 -0.10 -5.58 16 10 C 0.20 9.26 4.82 85.63 0.41 9.67 16 11 N -0.58 -28.24 2.41 -706.34 -1.70 -29.94 16 12 C -0.26 -13.84 8.90 84.03 0.75 -13.10 16 13 H 0.04 2.40 7.94 -2.91 -0.02 2.38 16 14 C 0.00 -0.01 4.28 84.86 0.36 0.35 16 15 N -0.91 -53.42 11.81 21.65 0.26 -53.16 16 16 Si 0.93 43.76 29.24 68.60 2.01 45.77 16 17 H -0.25 -10.51 5.13 99.48 0.51 -10.00 16 18 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 C 0.17 7.17 5.01 86.38 0.43 7.60 16 21 C -0.12 -4.39 5.76 29.85 0.17 -4.22 16 22 C 0.49 15.60 8.33 71.24 0.59 16.20 16 23 O -0.55 -20.40 16.74 21.98 0.37 -20.03 16 24 O -0.51 -12.09 13.42 -51.38 -0.69 -12.77 16 25 H 0.09 2.79 6.63 -2.39 -0.02 2.78 16 26 H 0.06 1.69 7.65 -2.39 -0.02 1.67 16 27 H 0.07 1.74 7.67 -2.39 -0.02 1.73 16 28 H 0.14 3.49 6.30 -2.91 -0.02 3.47 16 29 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.06 1.84 6.71 -2.39 -0.02 1.83 16 32 H 0.06 1.86 5.84 -2.39 -0.01 1.85 16 33 H 0.09 1.94 8.09 -2.38 -0.02 1.92 16 34 H 0.06 3.31 5.39 -2.39 -0.01 3.30 16 35 H 0.04 1.67 5.46 -2.39 -0.01 1.65 16 36 H 0.25 14.17 8.32 -92.71 -0.77 13.40 16 37 H 0.03 1.38 8.05 -2.39 -0.02 1.36 16 38 H 0.05 2.06 7.26 -2.38 -0.02 2.04 16 39 H 0.11 3.63 5.67 -2.39 -0.01 3.62 16 40 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.42 5.74 9.10 -74.06 -0.67 5.06 16 Total: -1.00 -68.41 332.65 4.70 -63.71 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.19 Total: 20.07 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.04 Total: 0.18 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -1.45 Total: -83.10 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.09 Total: -46.62 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.01 Total: 45.77 kcal Total: -68.41 4.70 -63.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607316026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.092 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds