Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40313 * 126.64784 * 2 1 4 4 C 1.35177 * 107.12760 * 180.28258 * 3 2 1 5 5 C 1.50700 * 125.61089 * 179.72532 * 4 3 2 6 6 N 1.46902 * 109.46926 * 89.99984 * 5 4 3 7 7 C 1.46848 * 110.99728 * 45.78874 * 6 5 4 8 8 C 1.53040 * 109.51961 * 185.83565 * 7 6 5 9 9 C 1.53120 * 109.27874 * 300.82357 * 8 7 6 10 10 C 1.50702 * 109.57155 * 177.58720 * 9 8 7 11 11 H 1.07999 * 120.00378 * 240.28007 * 10 9 8 12 12 C 1.37878 * 119.99794 * 60.28961 * 10 9 8 13 13 N 1.31512 * 120.00406 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99815 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47164 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.46912 * 119.99865 * 14 12 10 17 17 H 1.48504 * 109.47259 * 239.99851 * 14 12 10 18 18 C 1.53117 * 109.16125 * 57.65441 * 9 8 7 19 19 C 1.46847 * 110.99825 * 170.00067 * 6 5 4 20 20 O 1.33910 * 108.77686 * 359.74687 * 4 3 2 21 21 C 1.34934 * 109.38797 * 359.97438 * 20 4 3 22 22 C 1.46472 * 126.00048 * 179.97438 * 21 20 4 23 23 O 1.21624 * 119.99739 * 180.02562 * 22 21 20 24 24 O 1.34890 * 120.00039 * 0.02783 * 22 21 20 25 25 H 1.08999 * 109.47528 * 270.17074 * 1 2 3 26 26 H 1.09000 * 109.47676 * 30.17693 * 1 2 3 27 27 H 1.09004 * 109.47098 * 150.17347 * 1 2 3 28 28 H 1.07998 * 126.44123 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46904 * 210.00319 * 5 4 3 30 30 H 1.09003 * 109.46619 * 329.99907 * 5 4 3 31 31 H 1.08996 * 109.46840 * 305.85122 * 7 6 5 32 32 H 1.09001 * 109.46346 * 65.82636 * 7 6 5 33 33 H 1.08997 * 109.50067 * 180.87861 * 8 7 6 34 34 H 1.09000 * 109.53433 * 60.78286 * 8 7 6 35 35 H 1.08993 * 109.52459 * 297.74795 * 9 8 7 36 36 H 0.96997 * 120.00679 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.50250 * 182.39994 * 18 9 8 38 38 H 1.09011 * 109.53584 * 62.30740 * 18 9 8 39 39 H 1.09000 * 109.46115 * 294.17940 * 19 6 5 40 40 H 1.09005 * 109.45991 * 54.15430 * 19 6 5 41 41 H 0.96700 * 117.00163 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3444 1.1258 0.0000 4 6 3.6185 0.6741 -0.0064 5 6 4.8549 1.5356 -0.0146 6 7 5.2643 1.8178 1.3677 7 6 5.2351 0.5978 2.1846 8 6 5.5246 0.9530 3.6447 9 6 6.8994 1.6204 3.7396 10 6 7.1661 2.0265 5.1662 11 1 7.3330 3.0653 5.4098 12 6 7.1971 1.0717 6.1604 13 7 6.9936 -0.1933 5.8639 14 14 7.5284 1.5750 7.9286 15 1 7.7237 3.0455 7.9964 16 1 6.3729 1.1889 8.7778 17 1 8.7524 0.8905 8.4171 18 6 6.9188 2.8610 2.8423 19 6 6.5889 2.4505 1.4055 20 8 3.6012 -0.6649 -0.0046 21 6 2.3227 -1.0963 0.0034 22 6 1.8857 -2.4943 0.0071 23 8 0.6990 -2.7605 0.0140 24 8 2.7995 -3.4865 0.0030 25 1 -0.3634 0.0031 1.0276 26 1 -0.3634 0.8884 -0.5166 27 1 -0.3633 -0.8916 -0.5112 28 1 2.0303 2.1590 0.0004 29 1 5.6589 1.0124 -0.5321 30 1 4.6413 2.4727 -0.5288 31 1 4.2508 0.1353 2.1116 32 1 5.9913 -0.0992 1.8236 33 1 5.5182 0.0453 4.2482 34 1 4.7610 1.6390 4.0113 35 1 7.6675 0.9207 3.4104 36 1 7.0150 -0.8650 6.5634 37 1 7.9086 3.3165 2.8726 38 1 6.1774 3.5779 3.1954 39 1 7.3388 1.7448 1.0481 40 1 6.5878 3.3338 0.7667 41 1 2.4632 -4.3932 0.0053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607638749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -81.155905 kcal Electronic energy + Delta-G solvation = -23786.853716 eV Core-core repulsion = 20247.033999 eV Total energy + Delta-G solvation = -3539.819718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.88730 -40.03759 -38.28997 -36.39703 -34.31902 -34.16792 -32.05103 -30.30678 -29.85463 -28.01248 -27.09175 -24.86426 -22.95567 -22.24862 -21.77994 -20.99443 -19.68799 -18.61871 -18.48231 -17.52912 -16.89610 -16.34304 -15.57632 -15.43961 -14.84225 -14.52793 -14.40163 -13.94763 -13.59486 -13.30623 -13.23699 -13.07494 -12.88864 -12.69741 -12.41663 -12.32105 -12.00803 -11.78856 -11.68889 -11.41969 -10.97450 -10.84841 -10.77316 -10.45843 -10.25254 -10.00929 -9.73705 -9.46874 -9.00793 -8.75111 -8.65450 -8.30017 -7.90090 -5.96984 -4.02595 0.72257 2.14976 2.34641 2.76006 3.12491 3.30806 3.39043 3.42787 4.35251 4.45278 4.46576 4.61776 4.98388 5.21491 5.26604 5.33470 5.38583 5.50847 5.55539 5.61593 5.67702 5.80017 5.90606 5.96313 6.02911 6.15540 6.18175 6.24510 6.34698 6.56497 6.58063 6.80983 6.86522 7.02164 7.08192 7.36093 7.51376 7.56442 7.67452 7.79780 8.02980 8.14520 8.47600 9.01401 9.62117 11.09289 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.003950 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.431545 B = 7086.866996 C = 7859.397132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.064 4.064 3 C -0.211 4.211 4 C 0.059 3.941 5 C 0.123 3.877 6 N -0.529 5.529 7 C 0.055 3.945 8 C -0.103 4.103 9 C 0.046 3.954 10 C -0.510 4.510 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.106 4.106 19 C 0.060 3.940 20 O -0.148 6.148 21 C -0.087 4.087 22 C 0.575 3.425 23 O -0.500 6.500 24 O -0.503 6.503 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.026 0.974 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.021 0.979 36 H 0.259 0.741 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.029 0.971 40 H 0.062 0.938 41 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 -0.659 -14.783 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.066 4.066 3 C -0.231 4.231 4 C 0.006 3.994 5 C -0.005 4.005 6 N -0.255 5.255 7 C -0.072 4.072 8 C -0.141 4.141 9 C 0.028 3.972 10 C -0.549 4.549 11 H 0.074 0.926 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.144 4.144 19 C -0.067 4.067 20 O -0.043 6.043 21 C -0.136 4.136 22 C 0.420 3.580 23 O -0.391 6.391 24 O -0.315 6.315 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.179 0.821 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.384 -0.387 -14.495 17.272 hybrid contribution 0.479 -0.967 0.704 1.289 sum -8.905 -1.355 -13.791 16.472 Atomic orbital electron populations 1.20482 0.88018 1.03596 1.03294 1.20639 0.97493 0.90710 0.97749 1.21451 0.91011 1.00178 1.10416 1.22808 0.97701 0.80147 0.98765 1.20831 0.90373 0.96045 0.93218 1.62339 1.28813 1.27784 1.06581 1.22372 0.99089 0.88991 0.96749 1.21664 0.98852 1.02903 0.90677 1.18703 0.93215 0.91454 0.93832 1.21231 1.47808 0.93629 0.92184 0.92637 1.24975 0.95231 0.94963 0.98850 1.69883 1.50183 1.00305 1.32708 0.86582 0.77782 0.78681 0.85218 1.19803 1.21084 1.21136 1.21680 0.99731 1.00595 0.92351 1.22176 0.87420 0.97356 0.99773 1.84152 1.27616 1.22157 1.70423 1.20273 0.82330 0.91349 1.19687 1.18839 0.83163 0.83608 0.72402 1.90950 1.17218 1.83300 1.47612 1.84705 1.41663 1.19609 1.85507 0.90284 0.90954 0.89792 0.82081 0.92996 0.87493 0.92686 0.95529 0.88877 0.93767 0.96070 0.93125 0.92868 0.92302 0.95313 0.91955 0.72449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.81 36.00 0.35 -0.69 16 2 C -0.06 -0.84 6.20 -104.42 -0.65 -1.49 16 3 C -0.21 -2.71 10.72 -39.89 -0.43 -3.14 16 4 C 0.06 0.84 5.00 -35.40 -0.18 0.67 16 5 C 0.12 1.65 5.81 -4.97 -0.03 1.62 16 6 N -0.53 -9.02 4.80 -236.11 -1.13 -10.15 16 7 C 0.05 1.10 4.98 -3.83 -0.02 1.08 16 8 C -0.10 -2.45 5.12 -26.65 -0.14 -2.59 16 9 C 0.05 1.15 2.16 -91.65 -0.20 0.95 16 10 C -0.51 -13.95 8.56 -34.44 -0.29 -14.24 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 13 N -0.89 -25.55 11.37 55.43 0.63 -24.92 16 14 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 C -0.11 -2.14 5.32 -26.66 -0.14 -2.28 16 19 C 0.06 1.01 5.42 -3.84 -0.02 0.99 16 20 O -0.15 -2.34 9.88 4.76 0.05 -2.29 16 21 C -0.09 -1.27 7.18 -36.84 -0.26 -1.54 16 22 C 0.57 7.80 8.30 34.05 0.28 8.08 16 23 O -0.50 -7.17 15.53 -19.36 -0.30 -7.47 16 24 O -0.50 -5.70 13.44 -42.45 -0.57 -6.28 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.94 6.45 -51.93 -0.34 0.60 16 28 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 1.10 6.02 -51.93 -0.31 0.79 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 2.50 6.17 -51.93 -0.32 2.18 16 34 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 41 H 0.42 2.38 9.11 45.56 0.42 2.80 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -31.46 337.15 -8.25 -39.70 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.16 Total: 1.03 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.82 Total: -11.00 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.50 Total: -35.08 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.82 Total: -16.03 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.46 -8.25 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607638749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.451 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds