Wall clock time and date at job start Tue Mar 31 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40312 * 126.65308 * 2 1 4 4 C 1.35169 * 107.12575 * 180.26203 * 3 2 1 5 5 C 1.50704 * 125.60597 * 179.72024 * 4 3 2 6 6 N 1.46899 * 109.46931 * 89.99411 * 5 4 3 7 7 C 1.46846 * 111.00001 * 66.04686 * 6 5 4 8 8 C 1.53039 * 109.52261 * 174.15753 * 7 6 5 9 9 C 1.53115 * 109.27968 * 59.17767 * 8 7 6 10 10 C 1.53118 * 109.16444 * 302.34729 * 9 8 7 11 11 H 1.09000 * 109.49963 * 297.71230 * 10 9 8 12 12 C 1.50694 * 109.50812 * 177.63278 * 10 9 8 13 13 H 1.08000 * 119.99941 * 240.00415 * 12 10 9 14 14 C 1.37880 * 119.99947 * 59.99391 * 12 10 9 15 15 N 1.31512 * 119.99983 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00127 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47025 * 90.00291 * 16 14 12 18 18 H 1.48494 * 109.47016 * 210.00488 * 16 14 12 19 19 H 1.48503 * 109.46950 * 330.00720 * 16 14 12 20 20 C 1.46840 * 111.00394 * 301.83401 * 6 5 4 21 21 O 1.33911 * 108.78376 * 359.59902 * 4 3 2 22 22 C 1.34935 * 109.38029 * 0.40536 * 21 4 3 23 23 C 1.46472 * 125.99874 * 179.74996 * 22 21 4 24 24 O 1.21621 * 120.00432 * 179.97438 * 23 22 21 25 25 O 1.34898 * 119.99450 * 0.02562 * 23 22 21 26 26 H 1.09003 * 109.46937 * 90.00300 * 1 2 3 27 27 H 1.09000 * 109.47649 * 210.00280 * 1 2 3 28 28 H 1.09006 * 109.47279 * 330.00870 * 1 2 3 29 29 H 1.08002 * 126.43185 * 359.97438 * 3 2 1 30 30 H 1.08995 * 109.47155 * 209.99511 * 5 4 3 31 31 H 1.08999 * 109.47110 * 329.99581 * 5 4 3 32 32 H 1.08995 * 109.46389 * 294.17481 * 7 6 5 33 33 H 1.09005 * 109.46366 * 54.14290 * 7 6 5 34 34 H 1.09002 * 109.50451 * 179.12171 * 8 7 6 35 35 H 1.09000 * 109.50601 * 299.23598 * 8 7 6 36 36 H 1.09002 * 109.51865 * 62.25330 * 9 8 7 37 37 H 1.08997 * 109.52556 * 182.37516 * 9 8 7 38 38 H 0.97002 * 120.00269 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.46431 * 305.85804 * 20 6 5 40 40 H 1.09008 * 109.46035 * 65.82318 * 20 6 5 41 41 H 0.96700 * 116.99501 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6185 0.6739 -0.0059 5 6 4.8549 1.5354 -0.0141 6 7 5.2639 1.8180 1.3682 7 6 5.6971 0.5917 2.0500 8 6 6.2510 0.9436 3.4326 9 6 5.1632 1.6468 4.2491 10 6 4.6953 2.8941 3.4942 11 1 5.5292 3.5876 3.3854 12 6 3.5838 3.5603 4.2632 13 1 2.6115 3.6834 3.8094 14 6 3.8080 4.0126 5.5463 15 7 4.9920 3.8630 6.0988 16 14 2.4299 4.8379 6.4999 17 1 1.6709 3.8125 7.2600 18 1 3.0058 5.8286 7.4443 19 1 1.5175 5.5285 5.5534 20 6 4.1866 2.4856 2.1098 21 8 3.6011 -0.6651 -0.0006 22 6 2.3226 -1.0964 -0.0003 23 6 1.8855 -2.4944 -0.0004 24 8 0.6988 -2.7606 0.0004 25 8 2.7994 -3.4866 -0.0003 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8901 0.5137 29 1 2.0303 2.1590 -0.0004 30 1 5.6591 1.0119 -0.5311 31 1 4.6416 2.4723 -0.5286 32 1 4.8475 -0.0822 2.1600 33 1 6.4737 0.1036 1.4611 34 1 6.5580 0.0316 3.9446 35 1 7.1093 1.6065 3.3229 36 1 4.3207 0.9702 4.3922 37 1 5.5662 1.9369 5.2193 38 1 5.1499 4.1815 7.0013 39 1 3.8660 3.3731 1.5643 40 1 3.3440 1.8028 2.2194 41 1 2.4629 -4.3932 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607639198.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:57 Heat of formation + Delta-G solvation = -83.526098 kcal Electronic energy + Delta-G solvation = -24196.647202 eV Core-core repulsion = 20656.724705 eV Total energy + Delta-G solvation = -3539.922497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.83187 -40.05239 -38.32442 -36.41296 -34.21675 -34.09737 -32.24824 -30.17315 -29.93569 -27.96933 -26.63189 -24.98157 -23.41012 -21.94786 -21.77842 -20.98884 -19.76708 -18.61428 -18.41759 -17.52103 -16.81382 -16.35966 -15.52861 -15.38732 -14.90994 -14.40701 -14.28993 -13.94531 -13.73028 -13.36803 -13.17927 -13.04606 -12.73809 -12.63554 -12.46108 -12.34210 -12.02467 -11.80548 -11.69286 -11.40014 -10.96338 -10.84286 -10.72148 -10.66461 -10.14817 -9.89553 -9.66037 -9.50193 -9.14564 -8.76619 -8.59901 -8.32798 -7.96309 -5.99312 -4.05549 0.75371 2.21700 2.36222 2.78050 3.15496 3.29912 3.36926 3.39412 4.31064 4.46454 4.60774 4.67638 4.99625 5.22289 5.30990 5.35574 5.47484 5.59573 5.61047 5.65797 5.72850 5.79403 5.97154 6.00082 6.04738 6.18631 6.19966 6.34455 6.38351 6.44823 6.66094 6.70929 6.86634 6.89990 7.15727 7.30350 7.49563 7.62723 7.66090 7.74371 8.03648 8.13902 8.44553 8.97987 9.58932 11.06720 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.004585 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.763945 B = 6105.354765 C = 6766.936733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.060 4.060 3 C -0.217 4.217 4 C 0.021 3.979 5 C 0.123 3.877 6 N -0.519 5.519 7 C 0.058 3.942 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.055 3.945 11 H 0.035 0.965 12 C -0.514 4.514 13 H 0.053 0.947 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.060 3.940 21 O -0.147 6.147 22 C -0.094 4.094 23 C 0.574 3.426 24 O -0.500 6.500 25 O -0.506 6.506 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.092 0.908 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.029 0.971 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 -9.577 -13.314 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.062 4.062 3 C -0.237 4.237 4 C -0.035 4.035 5 C -0.006 4.006 6 N -0.241 5.241 7 C -0.070 4.070 8 C -0.155 4.155 9 C -0.150 4.150 10 C 0.037 3.963 11 H 0.053 0.947 12 C -0.553 4.553 13 H 0.072 0.928 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.067 4.067 21 O -0.042 6.042 22 C -0.144 4.144 23 C 0.420 3.580 24 O -0.390 6.390 25 O -0.317 6.317 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.178 0.822 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -2.003 -9.087 -13.138 16.099 hybrid contribution -1.775 -0.680 0.681 2.019 sum -3.779 -9.767 -12.457 16.274 Atomic orbital electron populations 1.20494 0.88071 1.04051 1.02890 1.20650 0.97503 0.90752 0.97279 1.21591 0.91387 1.00287 1.10393 1.24508 0.99589 0.80430 0.98975 1.21320 0.89434 0.95936 0.93942 1.62487 1.37524 1.23744 1.00345 1.22135 0.98468 0.90089 0.96263 1.21683 1.00283 0.99658 0.93883 1.21671 0.95296 0.96648 1.01388 1.18666 0.96416 0.93421 0.87828 0.94684 1.21109 0.97238 1.37856 0.99099 0.92850 1.24920 0.95419 0.95834 0.97574 1.69884 1.21163 1.46773 1.14845 0.86638 0.82341 0.79343 0.79931 1.20800 1.21216 1.19940 1.22480 0.90686 0.96420 0.97098 1.84141 1.27426 1.22279 1.70385 1.20276 0.82641 0.91215 1.20264 1.18853 0.83160 0.83577 0.72435 1.90951 1.17240 1.83284 1.47565 1.84693 1.41762 1.19568 1.85704 0.90555 0.89734 0.90678 0.82179 0.89082 0.87134 0.95381 0.92004 0.93341 0.91898 0.95243 0.88969 0.93031 0.91947 0.95313 0.72574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 9.82 36.00 0.35 -0.84 16 2 C -0.06 -0.86 6.20 -104.42 -0.65 -1.51 16 3 C -0.22 -3.09 9.33 -39.89 -0.37 -3.46 16 4 C 0.02 0.30 4.95 -35.40 -0.18 0.13 16 5 C 0.12 1.66 5.91 -4.97 -0.03 1.63 16 6 N -0.52 -8.98 4.86 -236.11 -1.15 -10.12 16 7 C 0.06 1.02 5.14 -3.83 -0.02 1.00 16 8 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 9 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 10 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 11 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 12 C -0.51 -13.83 8.57 -34.44 -0.30 -14.12 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.04 11.35 55.43 0.63 -24.41 16 16 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.06 1.20 3.96 -3.84 -0.02 1.19 16 21 O -0.15 -2.31 10.23 4.75 0.05 -2.26 16 22 C -0.09 -1.42 7.18 -36.84 -0.26 -1.69 16 23 C 0.57 7.85 8.30 34.05 0.28 8.13 16 24 O -0.50 -7.33 15.53 -19.36 -0.30 -7.64 16 25 O -0.51 -5.47 13.44 -42.48 -0.57 -6.04 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.10 6.45 -51.93 -0.33 0.76 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.16 2.05 8.06 -52.49 -0.42 1.62 16 30 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 31 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.03 0.53 7.12 -51.93 -0.37 0.16 16 33 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 40 H 0.03 0.61 6.53 -51.92 -0.34 0.27 16 41 H 0.42 2.17 9.11 45.56 0.42 2.59 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -30.90 335.01 -8.22 -39.12 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.13 Total: 2.20 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.78 Total: -11.96 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.52 Total: -34.53 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.82 Total: -15.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.90 -8.22 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607639198.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.404 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds