Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40312 * 126.65308 * 2 1 4 4 C 1.35169 * 107.12575 * 180.26203 * 3 2 1 5 5 C 1.50704 * 125.60597 * 179.72024 * 4 3 2 6 6 N 1.46899 * 109.46931 * 89.99411 * 5 4 3 7 7 C 1.46846 * 111.00001 * 66.04686 * 6 5 4 8 8 C 1.53039 * 109.52261 * 174.15753 * 7 6 5 9 9 C 1.53115 * 109.27968 * 59.17767 * 8 7 6 10 10 C 1.53118 * 109.16444 * 302.34729 * 9 8 7 11 11 H 1.09000 * 109.49963 * 297.71230 * 10 9 8 12 12 C 1.50694 * 109.50812 * 177.63278 * 10 9 8 13 13 H 1.08000 * 119.99941 * 240.00415 * 12 10 9 14 14 C 1.37880 * 119.99947 * 59.99391 * 12 10 9 15 15 N 1.31512 * 119.99983 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00127 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47025 * 90.00291 * 16 14 12 18 18 H 1.48494 * 109.47016 * 210.00488 * 16 14 12 19 19 H 1.48503 * 109.46950 * 330.00720 * 16 14 12 20 20 C 1.46840 * 111.00394 * 301.83401 * 6 5 4 21 21 O 1.33911 * 108.78376 * 359.59902 * 4 3 2 22 22 C 1.34935 * 109.38029 * 0.40536 * 21 4 3 23 23 C 1.46472 * 125.99874 * 179.74996 * 22 21 4 24 24 O 1.21621 * 120.00432 * 179.97438 * 23 22 21 25 25 O 1.34898 * 119.99450 * 0.02562 * 23 22 21 26 26 H 1.09003 * 109.46937 * 90.00300 * 1 2 3 27 27 H 1.09000 * 109.47649 * 210.00280 * 1 2 3 28 28 H 1.09006 * 109.47279 * 330.00870 * 1 2 3 29 29 H 1.08002 * 126.43185 * 359.97438 * 3 2 1 30 30 H 1.08995 * 109.47155 * 209.99511 * 5 4 3 31 31 H 1.08999 * 109.47110 * 329.99581 * 5 4 3 32 32 H 1.08995 * 109.46389 * 294.17481 * 7 6 5 33 33 H 1.09005 * 109.46366 * 54.14290 * 7 6 5 34 34 H 1.09002 * 109.50451 * 179.12171 * 8 7 6 35 35 H 1.09000 * 109.50601 * 299.23598 * 8 7 6 36 36 H 1.09002 * 109.51865 * 62.25330 * 9 8 7 37 37 H 1.08997 * 109.52556 * 182.37516 * 9 8 7 38 38 H 0.97002 * 120.00269 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.46431 * 305.85804 * 20 6 5 40 40 H 1.09008 * 109.46035 * 65.82318 * 20 6 5 41 41 H 0.96700 * 116.99501 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6185 0.6739 -0.0059 5 6 4.8549 1.5354 -0.0141 6 7 5.2639 1.8180 1.3682 7 6 5.6971 0.5917 2.0500 8 6 6.2510 0.9436 3.4326 9 6 5.1632 1.6468 4.2491 10 6 4.6953 2.8941 3.4942 11 1 5.5292 3.5876 3.3854 12 6 3.5838 3.5603 4.2632 13 1 2.6115 3.6834 3.8094 14 6 3.8080 4.0126 5.5463 15 7 4.9920 3.8630 6.0988 16 14 2.4299 4.8379 6.4999 17 1 1.6709 3.8125 7.2600 18 1 3.0058 5.8286 7.4443 19 1 1.5175 5.5285 5.5534 20 6 4.1866 2.4856 2.1098 21 8 3.6011 -0.6651 -0.0006 22 6 2.3226 -1.0964 -0.0003 23 6 1.8855 -2.4944 -0.0004 24 8 0.6988 -2.7606 0.0004 25 8 2.7994 -3.4866 -0.0003 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8901 0.5137 29 1 2.0303 2.1590 -0.0004 30 1 5.6591 1.0119 -0.5311 31 1 4.6416 2.4723 -0.5286 32 1 4.8475 -0.0822 2.1600 33 1 6.4737 0.1036 1.4611 34 1 6.5580 0.0316 3.9446 35 1 7.1093 1.6065 3.3229 36 1 4.3207 0.9702 4.3922 37 1 5.5662 1.9369 5.2193 38 1 5.1499 4.1815 7.0013 39 1 3.8660 3.3731 1.5643 40 1 3.3440 1.8028 2.2194 41 1 2.4629 -4.3932 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607639198.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -103.730338 kcal Electronic energy + Delta-G solvation = -24197.523324 eV Core-core repulsion = 20656.724705 eV Total energy + Delta-G solvation = -3540.798619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.92580 -41.05550 -39.82995 -37.36552 -35.87766 -35.21000 -33.95250 -31.71962 -31.42414 -28.98203 -27.89403 -26.91860 -24.64613 -23.32842 -23.22804 -22.32684 -20.93966 -20.16653 -19.46344 -18.56539 -18.45798 -17.78297 -16.88822 -16.67635 -16.36337 -15.91277 -15.70341 -15.16636 -14.86981 -14.76667 -14.39933 -14.28243 -14.15105 -14.10238 -13.86134 -13.62461 -13.36608 -13.02928 -12.85917 -12.82258 -12.75047 -12.55068 -12.35261 -11.86768 -11.79554 -11.73445 -11.41852 -10.93796 -10.71813 -10.66906 -10.37446 -9.75728 -9.37299 -8.07101 -6.20414 -0.32322 1.13274 1.35312 1.41249 1.42552 1.51967 1.72103 2.18870 2.43361 3.05254 3.20580 3.51339 3.63713 4.01989 4.14146 4.18646 4.25464 4.32091 4.44123 4.46314 4.61856 4.65571 4.69678 4.71840 4.76822 4.89193 4.96982 5.00408 5.04515 5.07236 5.16435 5.22279 5.37044 5.43514 5.50552 5.64376 5.78654 5.94089 6.08535 6.17518 6.18233 6.43921 6.80643 6.91937 7.47377 8.97598 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.004585 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.763945 B = 6105.354765 C = 6766.936733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.069 4.069 3 C -0.222 4.222 4 C 0.013 3.987 5 C 0.124 3.876 6 N -0.524 5.524 7 C 0.065 3.935 8 C -0.111 4.111 9 C -0.105 4.105 10 C 0.052 3.948 11 H 0.003 0.997 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.015 3.985 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.078 3.922 21 O -0.157 6.157 22 C -0.115 4.115 23 C 0.578 3.422 24 O -0.516 6.516 25 O -0.502 6.502 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.173 0.827 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.016 0.984 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.013 0.987 37 H 0.058 0.942 38 H 0.259 0.741 39 H 0.070 0.930 40 H 0.018 0.982 41 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 -9.967 -14.739 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 C -0.242 4.242 4 C -0.042 4.042 5 C -0.004 4.004 6 N -0.246 5.246 7 C -0.063 4.063 8 C -0.149 4.149 9 C -0.144 4.144 10 C 0.033 3.967 11 H 0.021 0.979 12 C -0.571 4.571 13 H 0.070 0.930 14 C -0.183 4.183 15 N -0.555 5.555 16 Si 0.776 3.224 17 H -0.206 1.206 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.049 4.049 21 O -0.053 6.053 22 C -0.164 4.164 23 C 0.423 3.577 24 O -0.408 6.408 25 O -0.317 6.317 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.190 0.810 30 H 0.135 0.865 31 H 0.152 0.848 32 H 0.034 0.966 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -2.339 -9.504 -14.583 17.563 hybrid contribution -1.644 -0.606 1.109 2.073 sum -3.983 -10.110 -13.474 17.310 Atomic orbital electron populations 1.20528 0.86782 1.03958 1.03942 1.21007 0.98594 0.90756 0.96736 1.21841 0.91449 1.00907 1.10011 1.24669 1.00056 0.80326 0.99148 1.21502 0.89962 0.97289 0.91601 1.62387 1.36597 1.23816 1.01806 1.22081 0.98775 0.89991 0.95434 1.21591 0.98586 0.99817 0.94891 1.21480 0.95896 0.96449 1.00551 1.18597 0.94742 0.92910 0.90441 0.97879 1.21499 0.97874 1.38028 0.99692 0.92969 1.25675 0.97526 0.96547 0.98597 1.70024 1.22845 1.47570 1.15037 0.85686 0.79732 0.78379 0.78643 1.20631 1.20908 1.19023 1.22093 0.90878 0.96777 0.95198 1.84113 1.27746 1.22733 1.70694 1.20663 0.82672 0.92262 1.20834 1.18721 0.83100 0.83701 0.72129 1.90942 1.17835 1.83539 1.48454 1.84642 1.41194 1.20810 1.85007 0.88878 0.90750 0.89744 0.80967 0.86541 0.84794 0.96602 0.88841 0.91603 0.92230 0.96818 0.92313 0.93135 0.91162 0.96362 0.69855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 9.82 71.23 0.70 -1.50 16 2 C -0.07 -1.90 6.20 -19.73 -0.12 -2.02 16 3 C -0.22 -5.97 9.33 22.07 0.21 -5.76 16 4 C 0.01 0.36 4.95 24.98 0.12 0.48 16 5 C 0.12 2.99 5.91 85.56 0.51 3.50 16 6 N -0.52 -17.12 4.86 -900.93 -4.38 -21.49 16 7 C 0.06 2.14 5.14 86.33 0.44 2.58 16 8 C -0.11 -4.23 6.09 30.65 0.19 -4.04 16 9 C -0.11 -5.08 5.02 30.67 0.15 -4.92 16 10 C 0.05 2.57 2.26 -11.49 -0.03 2.55 16 11 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 12 C -0.53 -29.05 8.57 25.60 0.22 -28.83 16 13 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 14 C 0.02 0.85 5.30 84.66 0.45 1.29 16 15 N -0.92 -52.89 11.35 21.45 0.24 -52.65 16 16 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 C 0.08 3.08 3.96 86.33 0.34 3.42 16 21 O -0.16 -4.66 10.23 -4.84 -0.05 -4.71 16 22 C -0.11 -3.34 7.18 24.04 0.17 -3.17 16 23 C 0.58 15.13 8.30 69.97 0.58 15.71 16 24 O -0.52 -14.65 15.53 19.44 0.30 -14.35 16 25 O -0.50 -9.98 13.44 -56.75 -0.76 -10.75 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.87 6.45 -2.39 -0.02 1.85 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 30 H 0.12 2.26 8.06 -2.39 -0.02 2.24 16 31 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.02 0.57 7.12 -2.39 -0.02 0.55 16 33 H 0.09 2.54 8.06 -2.38 -0.02 2.52 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 3.20 6.15 -2.39 -0.01 3.19 16 38 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.07 2.64 8.12 -2.39 -0.02 2.62 16 40 H 0.02 0.76 6.53 -2.38 -0.02 0.74 16 41 H 0.44 3.69 9.11 -74.06 -0.67 3.01 16 Total: -1.00 -67.39 335.01 1.69 -65.71 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.37 Total: 13.42 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.93 Total: -20.72 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -4.13 Total: -74.14 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.51 Total: -29.80 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.39 1.69 -65.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607639198.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.025 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds