Wall clock time and date at job start Tue Mar 31 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38261 * 120.00405 * 2 1 4 4 C 1.38210 * 119.99851 * 180.23065 * 3 2 1 5 5 C 1.38258 * 120.00225 * 359.80772 * 4 3 2 6 6 C 1.50699 * 120.00032 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47266 * 199.98311 * 6 5 4 8 8 N 1.46902 * 109.47553 * 319.98489 * 6 5 4 9 9 C 1.46898 * 111.00218 * 204.99874 * 8 6 5 10 10 C 1.52994 * 109.47036 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.47431 * 59.99772 * 10 9 8 12 12 O 1.42897 * 109.47241 * 299.99923 * 10 9 8 13 13 C 1.50701 * 109.47246 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99751 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00320 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99767 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99938 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47353 * 59.99693 * 17 15 13 19 19 H 1.48506 * 109.46815 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47131 * 299.99310 * 17 15 13 21 21 C 1.50700 * 109.46842 * 79.98129 * 6 5 4 22 22 O 1.20825 * 120.00537 * 239.99867 * 21 6 5 23 23 O 1.34233 * 119.99755 * 60.00217 * 21 6 5 24 24 C 1.38212 * 119.99786 * 359.97438 * 5 4 3 25 25 C 1.38218 * 119.99818 * 179.78723 * 2 1 3 26 26 C 1.50703 * 119.99968 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47734 * 270.21341 * 1 2 3 28 28 H 1.09002 * 109.46829 * 30.21286 * 1 2 3 29 29 H 1.09000 * 109.47496 * 150.20599 * 1 2 3 30 30 H 1.07999 * 119.99705 * 0.06309 * 3 2 1 31 31 H 1.07998 * 119.99939 * 179.83954 * 4 3 2 32 32 H 1.00903 * 110.99904 * 81.04022 * 8 6 5 33 33 H 1.08997 * 109.46965 * 299.99496 * 9 8 6 34 34 H 1.09000 * 109.46772 * 59.99569 * 9 8 6 35 35 H 0.96707 * 114.00026 * 299.99972 * 12 10 9 36 36 H 0.97005 * 119.99889 * 180.02562 * 16 15 13 37 37 H 0.96702 * 116.99817 * 179.97438 * 23 21 6 38 38 H 1.08005 * 119.99681 * 180.02562 * 24 5 4 39 39 H 1.09002 * 109.47152 * 269.72462 * 26 25 2 40 40 H 1.09001 * 109.46980 * 149.72562 * 26 25 2 41 41 H 1.09004 * 109.47113 * 29.72543 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0048 5 6 4.2717 -0.0002 -0.0056 6 6 5.7786 -0.0003 -0.0115 7 1 6.1406 -0.9666 -0.3625 8 7 6.2650 1.0590 -0.9055 9 6 7.6104 0.7483 -1.4068 10 6 8.0816 1.8714 -2.3328 11 1 8.1076 2.8107 -1.7806 12 8 7.1789 1.9911 -3.4340 13 6 9.4615 1.5524 -2.8476 14 1 9.9535 0.6400 -2.5442 15 6 10.0965 2.4257 -3.7049 16 7 9.4977 3.5370 -4.0738 17 14 11.8073 2.0305 -4.3424 18 1 11.7718 0.7510 -5.0952 19 1 12.2646 3.1206 -5.2412 20 1 12.7454 1.9057 -3.1980 21 6 6.2863 0.2491 1.3854 22 8 6.9819 1.2105 1.6128 23 8 5.9658 -0.5970 2.3769 24 6 3.5805 -1.1971 -0.0011 25 6 2.1980 -1.1970 0.0044 26 6 1.4444 -2.5021 0.0087 27 1 -0.3634 0.0038 1.0276 28 1 -0.3633 0.8881 -0.5172 29 1 -0.3634 -0.8918 -0.5106 30 1 1.6584 2.1326 0.0010 31 1 4.1205 2.1324 -0.0074 32 1 6.2491 1.9566 -0.4448 33 1 8.2989 0.6566 -0.5668 34 1 7.5842 -0.1909 -1.9594 35 1 7.1053 1.1904 -3.9712 36 1 9.9443 4.1512 -4.6773 37 1 6.3152 -0.3958 3.2559 38 1 4.1205 -2.1324 -0.0013 39 1 1.2666 -2.8156 1.0374 40 1 2.0316 -3.2623 -0.5065 41 1 0.4901 -2.3723 -0.5017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607757009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:33 Heat of formation + Delta-G solvation = -123.799335 kcal Electronic energy + Delta-G solvation = -23410.792592 eV Core-core repulsion = 19869.123717 eV Total energy + Delta-G solvation = -3541.668876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62438 -39.38747 -36.87436 -35.91684 -34.97329 -32.86440 -32.19693 -32.03750 -29.37682 -27.66438 -26.69993 -25.35792 -23.92025 -22.12330 -21.68976 -20.62751 -19.78941 -18.03913 -17.01182 -16.94601 -16.44423 -15.78765 -15.39082 -14.86871 -14.57405 -14.40370 -14.26595 -13.98731 -13.79931 -13.39573 -13.12522 -13.01436 -12.91589 -12.71071 -12.37005 -12.04715 -11.98991 -11.73641 -11.54296 -11.34027 -11.03401 -10.92882 -10.87907 -10.79824 -10.78438 -10.58330 -10.07174 -9.02539 -8.70644 -8.55573 -8.42719 -8.22396 -7.98730 -5.98194 -4.16787 1.29596 1.45252 2.22416 3.07497 3.30611 3.35751 3.37363 3.75096 4.34509 4.51079 4.69995 4.77811 4.85346 5.00446 5.07518 5.16990 5.29053 5.31553 5.37050 5.38039 5.54140 5.59199 5.70575 5.75316 5.77429 6.07124 6.10077 6.15981 6.19135 6.42890 6.48030 6.50301 6.62231 6.64966 6.81111 7.03835 7.29121 7.60335 7.78207 7.87134 7.91074 8.20513 8.86136 9.47671 9.63736 11.06066 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021319 B = 0.003583 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.091140 B = 7813.891084 C = 8378.625661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.118 4.118 4 C -0.090 4.090 5 C -0.067 4.067 6 C 0.136 3.864 7 H 0.119 0.881 8 N -0.641 5.641 9 C 0.027 3.973 10 C 0.237 3.763 11 H 0.054 0.946 12 O -0.554 6.554 13 C -0.574 4.574 14 H 0.054 0.946 15 C 0.080 3.920 16 N -0.858 5.858 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.452 3.548 22 O -0.508 6.508 23 O -0.516 6.516 24 C -0.096 4.096 25 C -0.092 4.092 26 C -0.114 4.114 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.351 0.649 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.344 0.656 36 H 0.261 0.739 37 H 0.402 0.598 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.361 -10.754 11.029 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.068 4.068 6 C 0.023 3.977 7 H 0.137 0.863 8 N -0.273 5.273 9 C -0.101 4.101 10 C 0.179 3.821 11 H 0.072 0.928 12 O -0.356 6.356 13 C -0.613 4.613 14 H 0.072 0.928 15 C -0.126 4.126 16 N -0.493 5.493 17 Si 0.718 3.282 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.291 3.709 22 O -0.395 6.395 23 O -0.326 6.326 24 C -0.115 4.115 25 C -0.093 4.093 26 C -0.171 4.171 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.172 0.828 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.187 0.813 36 H 0.071 0.929 37 H 0.260 0.740 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.685 -10.014 10.280 22.008 hybrid contribution 2.117 -0.367 0.880 2.322 sum -14.568 -10.381 11.160 21.085 Atomic orbital electron populations 1.20841 0.91547 1.02768 1.02068 1.19740 0.95787 0.92732 1.00509 1.20967 0.93998 0.97414 1.01266 1.20959 0.94001 0.97874 0.98002 1.19269 0.92415 0.93748 1.01344 1.20409 0.93016 1.00299 0.83996 0.86320 1.61021 1.27749 1.03737 1.34793 1.23098 0.85951 1.02297 0.98753 1.19263 0.87104 0.92087 0.83620 0.92798 1.86566 1.66261 1.39447 1.43339 1.21565 1.01931 1.07086 1.30685 0.92753 1.25019 0.97362 0.94603 0.95648 1.70073 1.36967 1.09883 1.32390 0.86716 0.84643 0.78037 0.78831 1.20128 1.21176 1.20228 1.25169 0.77034 0.79816 0.88853 1.90753 1.35650 1.29560 1.83576 1.84612 1.72064 1.54265 1.21631 1.20793 0.93399 0.97235 1.00030 1.19627 0.93401 0.94814 1.01412 1.20825 1.00023 0.94133 1.02097 0.91411 0.91670 0.91264 0.86072 0.85814 0.82793 0.95064 0.91693 0.81313 0.92919 0.73987 0.85976 0.91404 0.91640 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.60 36.00 0.35 -0.59 16 2 C -0.09 -0.97 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 4 C -0.09 -1.25 9.32 -39.58 -0.37 -1.62 16 5 C -0.07 -0.93 4.88 -104.62 -0.51 -1.44 16 6 C 0.14 2.03 2.70 -70.02 -0.19 1.84 16 7 H 0.12 1.63 7.66 -51.93 -0.40 1.23 16 8 N -0.64 -11.62 5.42 -109.19 -0.59 -12.21 16 9 C 0.03 0.57 4.98 -3.83 -0.02 0.55 16 10 C 0.24 6.10 3.03 -27.89 -0.08 6.02 16 11 H 0.05 1.54 8.14 -51.93 -0.42 1.12 16 12 O -0.55 -14.51 12.59 -35.23 -0.44 -14.95 16 13 C -0.57 -15.96 8.76 -34.44 -0.30 -16.27 16 14 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 16 N -0.86 -25.71 12.84 55.43 0.71 -25.00 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.45 6.76 7.44 36.01 0.27 7.03 16 22 O -0.51 -9.28 16.06 -18.75 -0.30 -9.58 16 23 O -0.52 -5.98 13.34 -39.27 -0.52 -6.50 16 24 C -0.10 -1.17 9.32 -39.59 -0.37 -1.54 16 25 C -0.09 -1.02 5.88 -104.62 -0.62 -1.64 16 26 C -0.11 -0.92 9.61 36.01 0.35 -0.58 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.07 0.48 5.94 -51.93 -0.31 0.18 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.12 1.78 7.25 -52.49 -0.38 1.40 16 32 H 0.35 6.71 7.10 -39.29 -0.28 6.43 16 33 H 0.03 0.67 7.62 -51.93 -0.40 0.27 16 34 H 0.06 1.28 8.05 -51.93 -0.42 0.86 16 35 H 0.34 8.08 9.04 45.56 0.41 8.50 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.40 3.02 9.10 45.56 0.41 3.43 16 38 H 0.12 1.27 8.04 -52.48 -0.42 0.85 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 41 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -33.43 348.08 -7.67 -41.11 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -4.16 Total: 14.97 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.59 Total: -9.46 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.12 Total: -37.21 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.27 Total: -31.04 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.43 -7.67 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607757009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.694 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds