Wall clock time and date at job start Tue Mar 31 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38261 * 120.00405 * 2 1 4 4 C 1.38210 * 119.99851 * 180.23065 * 3 2 1 5 5 C 1.38258 * 120.00225 * 359.80772 * 4 3 2 6 6 C 1.50699 * 120.00032 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47266 * 199.98311 * 6 5 4 8 8 N 1.46902 * 109.47553 * 319.98489 * 6 5 4 9 9 C 1.46898 * 111.00218 * 204.99874 * 8 6 5 10 10 C 1.52994 * 109.47036 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.47431 * 59.99772 * 10 9 8 12 12 O 1.42897 * 109.47241 * 299.99923 * 10 9 8 13 13 C 1.50701 * 109.47246 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99751 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00320 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99767 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99938 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47353 * 59.99693 * 17 15 13 19 19 H 1.48506 * 109.46815 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47131 * 299.99310 * 17 15 13 21 21 C 1.50700 * 109.46842 * 79.98129 * 6 5 4 22 22 O 1.20825 * 120.00537 * 239.99867 * 21 6 5 23 23 O 1.34233 * 119.99755 * 60.00217 * 21 6 5 24 24 C 1.38212 * 119.99786 * 359.97438 * 5 4 3 25 25 C 1.38218 * 119.99818 * 179.78723 * 2 1 3 26 26 C 1.50703 * 119.99968 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47734 * 270.21341 * 1 2 3 28 28 H 1.09002 * 109.46829 * 30.21286 * 1 2 3 29 29 H 1.09000 * 109.47496 * 150.20599 * 1 2 3 30 30 H 1.07999 * 119.99705 * 0.06309 * 3 2 1 31 31 H 1.07998 * 119.99939 * 179.83954 * 4 3 2 32 32 H 1.00903 * 110.99904 * 81.04022 * 8 6 5 33 33 H 1.08997 * 109.46965 * 299.99496 * 9 8 6 34 34 H 1.09000 * 109.46772 * 59.99569 * 9 8 6 35 35 H 0.96707 * 114.00026 * 299.99972 * 12 10 9 36 36 H 0.97005 * 119.99889 * 180.02562 * 16 15 13 37 37 H 0.96702 * 116.99817 * 179.97438 * 23 21 6 38 38 H 1.08005 * 119.99681 * 180.02562 * 24 5 4 39 39 H 1.09002 * 109.47152 * 269.72462 * 26 25 2 40 40 H 1.09001 * 109.46980 * 149.72562 * 26 25 2 41 41 H 1.09004 * 109.47113 * 29.72543 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0048 5 6 4.2717 -0.0002 -0.0056 6 6 5.7786 -0.0003 -0.0115 7 1 6.1406 -0.9666 -0.3625 8 7 6.2650 1.0590 -0.9055 9 6 7.6104 0.7483 -1.4068 10 6 8.0816 1.8714 -2.3328 11 1 8.1076 2.8107 -1.7806 12 8 7.1789 1.9911 -3.4340 13 6 9.4615 1.5524 -2.8476 14 1 9.9535 0.6400 -2.5442 15 6 10.0965 2.4257 -3.7049 16 7 9.4977 3.5370 -4.0738 17 14 11.8073 2.0305 -4.3424 18 1 11.7718 0.7510 -5.0952 19 1 12.2646 3.1206 -5.2412 20 1 12.7454 1.9057 -3.1980 21 6 6.2863 0.2491 1.3854 22 8 6.9819 1.2105 1.6128 23 8 5.9658 -0.5970 2.3769 24 6 3.5805 -1.1971 -0.0011 25 6 2.1980 -1.1970 0.0044 26 6 1.4444 -2.5021 0.0087 27 1 -0.3634 0.0038 1.0276 28 1 -0.3633 0.8881 -0.5172 29 1 -0.3634 -0.8918 -0.5106 30 1 1.6584 2.1326 0.0010 31 1 4.1205 2.1324 -0.0074 32 1 6.2491 1.9566 -0.4448 33 1 8.2989 0.6566 -0.5668 34 1 7.5842 -0.1909 -1.9594 35 1 7.1053 1.1904 -3.9712 36 1 9.9443 4.1512 -4.6773 37 1 6.3152 -0.3958 3.2559 38 1 4.1205 -2.1324 -0.0013 39 1 1.2666 -2.8156 1.0374 40 1 2.0316 -3.2623 -0.5065 41 1 0.4901 -2.3723 -0.5017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607757009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:32 Heat of formation + Delta-G solvation = -148.749930 kcal Electronic energy + Delta-G solvation = -23411.874531 eV Core-core repulsion = 19869.123717 eV Total energy + Delta-G solvation = -3542.750815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.79021 -40.33828 -38.43182 -37.26427 -36.41683 -34.26452 -33.97180 -33.06189 -30.79416 -28.96164 -27.87589 -26.37263 -25.67480 -23.11650 -22.78661 -22.43205 -20.80669 -19.19796 -18.99779 -18.29215 -17.60666 -16.81104 -16.66461 -16.43489 -16.21522 -15.79466 -15.56629 -15.28873 -15.00316 -14.87616 -14.47936 -13.97212 -13.90783 -13.60166 -13.50451 -13.27021 -13.08309 -12.83617 -12.81596 -12.72503 -12.69102 -12.63739 -12.57674 -12.07669 -11.91583 -11.81730 -11.67749 -11.07410 -10.71698 -10.13814 -9.69412 -9.56770 -9.31891 -8.13971 -6.40649 0.34672 0.52531 1.04185 1.40176 1.42552 1.50596 2.00758 2.37836 2.75897 3.11441 3.17399 3.62872 3.83226 4.02891 4.10430 4.17049 4.21970 4.32818 4.37146 4.42421 4.52089 4.57790 4.76398 4.80404 4.90440 4.94713 4.97868 5.05988 5.10314 5.28794 5.39851 5.46495 5.54579 5.58747 5.60707 5.71483 5.79053 5.85732 6.04966 6.14956 6.16682 6.71498 6.85440 7.33648 7.60939 8.90653 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021319 B = 0.003583 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.091140 B = 7813.891084 C = 8378.625661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.082 4.082 6 C 0.137 3.863 7 H 0.135 0.865 8 N -0.645 5.645 9 C 0.049 3.951 10 C 0.238 3.762 11 H 0.012 0.988 12 O -0.568 6.568 13 C -0.590 4.590 14 H 0.061 0.939 15 C 0.025 3.975 16 N -0.899 5.899 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.461 3.539 22 O -0.548 6.548 23 O -0.501 6.501 24 C -0.101 4.101 25 C -0.095 4.095 26 C -0.113 4.113 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.341 0.659 33 H 0.021 0.979 34 H 0.080 0.920 35 H 0.355 0.645 36 H 0.262 0.738 37 H 0.423 0.577 38 H 0.140 0.860 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 -13.336 11.362 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.082 4.082 6 C 0.025 3.975 7 H 0.153 0.847 8 N -0.275 5.275 9 C -0.080 4.080 10 C 0.180 3.820 11 H 0.030 0.970 12 O -0.372 6.372 13 C -0.628 4.628 14 H 0.079 0.921 15 C -0.178 4.178 16 N -0.536 5.536 17 Si 0.787 3.213 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.302 3.698 22 O -0.439 6.439 23 O -0.313 6.313 24 C -0.120 4.120 25 C -0.095 4.095 26 C -0.169 4.169 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.124 0.876 32 H 0.161 0.839 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.199 0.801 36 H 0.070 0.930 37 H 0.284 0.716 38 H 0.158 0.842 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.738 -12.643 10.644 24.244 hybrid contribution 2.306 0.401 0.864 2.495 sum -15.432 -12.242 11.507 22.813 Atomic orbital electron populations 1.20906 0.89222 1.03778 1.03177 1.20143 0.97554 0.92255 0.99115 1.21183 0.93414 0.98778 1.01265 1.20969 0.95011 0.97438 0.99807 1.19207 0.91441 0.94498 1.03085 1.20413 0.93960 0.99481 0.83660 0.84750 1.60924 1.25854 1.04329 1.36427 1.22657 0.87145 1.00668 0.97488 1.19075 0.86984 0.91915 0.84065 0.96969 1.86508 1.66218 1.40515 1.43932 1.21983 1.02970 1.07279 1.30574 0.92070 1.25934 1.01660 0.94298 0.95902 1.70225 1.38986 1.11087 1.33311 0.85564 0.79261 0.78160 0.78282 1.18795 1.20968 1.19567 1.25015 0.76003 0.79304 0.89491 1.90749 1.37586 1.31298 1.84256 1.84538 1.71485 1.52877 1.22404 1.21034 0.94166 0.97117 0.99647 1.20043 0.93240 0.96252 1.00012 1.20893 1.00300 0.92504 1.03221 0.90108 0.91209 0.89777 0.84907 0.87627 0.83863 0.96041 0.90170 0.80066 0.92951 0.71589 0.84226 0.90111 0.90880 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.60 71.23 0.68 -0.84 16 2 C -0.09 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -3.07 9.70 22.27 0.22 -2.85 16 4 C -0.11 -3.24 9.32 22.27 0.21 -3.03 16 5 C -0.08 -2.22 4.88 -19.87 -0.10 -2.31 16 6 C 0.14 4.06 2.70 43.42 0.12 4.18 16 7 H 0.13 3.50 7.66 -2.39 -0.02 3.48 16 8 N -0.64 -24.03 5.42 -499.38 -2.71 -26.74 16 9 C 0.05 2.09 4.98 86.30 0.43 2.52 16 10 C 0.24 12.64 3.03 29.85 0.09 12.73 16 11 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 12 O -0.57 -30.58 12.59 -148.98 -1.88 -32.45 16 13 C -0.59 -33.19 8.76 25.60 0.22 -32.96 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.02 1.41 5.40 84.65 0.46 1.86 16 16 N -0.90 -55.15 12.84 21.45 0.28 -54.87 16 17 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.46 13.69 7.44 71.24 0.53 14.22 16 22 O -0.55 -20.52 16.06 21.97 0.35 -20.16 16 23 O -0.50 -10.83 13.34 -51.44 -0.69 -11.52 16 24 C -0.10 -2.27 9.32 22.27 0.21 -2.06 16 25 C -0.10 -1.88 5.88 -19.87 -0.12 -1.99 16 26 C -0.11 -1.42 9.61 71.24 0.68 -0.74 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 29 H 0.08 0.88 5.94 -2.39 -0.01 0.86 16 30 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.11 3.28 7.25 -2.91 -0.02 3.26 16 32 H 0.34 13.87 7.10 -89.69 -0.64 13.23 16 33 H 0.02 0.94 7.62 -2.39 -0.02 0.92 16 34 H 0.08 3.12 8.05 -2.39 -0.02 3.10 16 35 H 0.35 16.92 9.04 -74.05 -0.67 16.25 16 36 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 37 H 0.42 5.57 9.10 -74.06 -0.67 4.90 16 38 H 0.14 2.54 8.04 -2.91 -0.02 2.52 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 41 H 0.08 0.83 5.94 -2.38 -0.01 0.81 16 Total: -1.00 -73.26 348.08 0.00 -73.26 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.90 Total: 39.64 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 3.52 Total: -13.23 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.43 Total: -81.61 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -2.21 Total: -64.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.26 0.00 -73.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607757009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.486 kcal (2) G-P(sol) polarization free energy of solvation -73.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds