Wall clock time and date at job start Tue Mar 31 2020 06:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99632 * 2 1 4 4 H 1.48494 * 109.47312 * 269.99688 * 3 2 1 5 5 H 1.48503 * 109.47161 * 30.00171 * 3 2 1 6 6 H 1.48512 * 109.46885 * 149.99760 * 3 2 1 7 7 C 1.37873 * 120.00470 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.53046 * 109.45702 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.30793 * 178.61215 * 10 9 7 12 12 N 1.46923 * 108.77776 * 54.63922 * 11 10 9 13 13 C 1.34770 * 120.63141 * 126.40957 * 12 11 10 14 14 O 1.21286 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.50695 * 120.00355 * 359.97438 * 13 12 11 16 16 C 1.54893 * 129.08962 * 299.93855 * 15 13 12 17 17 C 1.57174 * 77.91593 * 180.16148 * 16 15 13 18 18 C 1.50704 * 129.24882 * 179.19457 * 17 16 15 19 19 O 1.20817 * 119.99790 * 241.28393 * 18 17 16 20 20 O 1.34228 * 119.99734 * 61.28713 * 18 17 16 21 21 C 1.54409 * 83.73017 * 42.47279 * 17 16 15 22 22 C 1.54885 * 83.77261 * 317.35591 * 17 16 15 23 23 C 1.46927 * 118.73554 * 306.38601 * 12 11 10 24 24 C 1.53031 * 109.46269 * 59.93047 * 9 7 2 25 25 H 0.97002 * 120.00774 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.44749 * 299.96135 * 9 7 2 27 27 H 1.08990 * 109.49711 * 298.56284 * 10 9 7 28 28 H 1.08999 * 109.49785 * 58.66530 * 10 9 7 29 29 H 1.09009 * 109.58115 * 174.42370 * 11 10 9 30 30 H 1.08995 * 109.58619 * 294.84531 * 11 10 9 31 31 H 1.09002 * 114.97772 * 291.95658 * 16 15 13 32 32 H 1.08998 * 114.97599 * 67.13016 * 16 15 13 33 33 H 0.96703 * 117.00061 * 180.02562 * 20 18 17 34 34 H 1.09001 * 114.93394 * 205.05779 * 21 17 16 35 35 H 1.09010 * 114.92889 * 70.03473 * 21 17 16 36 36 H 1.08996 * 116.12895 * 290.12269 * 22 17 16 37 37 H 1.09006 * 113.83199 * 154.95990 * 22 17 16 38 38 H 1.08993 * 109.58956 * 293.82344 * 23 12 11 39 39 H 1.08999 * 109.70338 * 173.46710 * 23 12 11 40 40 H 1.09004 * 109.49984 * 301.34024 * 24 9 7 41 41 H 1.09000 * 109.50061 * 61.43161 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6621 0.0005 11 6 1.4768 -4.9866 0.0356 12 7 0.5225 -5.0089 -1.0813 13 6 0.5116 -6.0352 -1.9548 14 8 -0.2815 -6.0422 -2.8724 15 6 1.4849 -7.1740 -1.7915 16 6 3.0335 -7.1438 -1.7981 17 6 2.7351 -8.6717 -1.5812 18 6 3.6998 -9.8204 -1.4364 19 8 3.6863 -10.7251 -2.2370 20 8 4.5739 -9.8384 -0.4179 21 6 1.6541 -8.4401 -2.6591 22 6 1.6566 -8.1489 -0.6002 23 6 -0.4202 -3.8915 -1.2274 24 6 0.3705 -2.5795 -1.2485 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5565 0.8907 27 1 2.8557 -3.6192 -0.9018 28 1 2.8884 -3.5912 0.8782 29 1 2.1754 -5.8174 -0.0641 30 1 0.9375 -5.0710 0.9789 31 1 3.4851 -6.9004 -2.7598 32 1 3.4873 -6.6246 -0.9539 33 1 5.1730 -10.5958 -0.3668 34 1 0.8154 -9.1355 -2.6257 35 1 2.0378 -8.2609 -3.6636 36 1 2.0243 -7.6924 0.3188 37 1 0.8275 -8.8401 -0.4479 38 1 -1.1143 -3.8866 -0.3870 39 1 -0.9754 -3.9985 -2.1592 40 1 -0.3220 -1.7378 -1.2602 41 1 0.9983 -2.5470 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610620078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:00 Heat of formation + Delta-G solvation = -27.833053 kcal Electronic energy + Delta-G solvation = -23989.456317 eV Core-core repulsion = 20451.948852 eV Total energy + Delta-G solvation = -3537.507465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.61719 -40.09020 -39.03688 -36.80372 -36.42018 -33.57814 -31.13407 -30.43289 -27.37184 -26.20539 -26.12538 -26.07998 -23.93366 -22.69983 -21.86838 -20.12119 -19.12914 -18.26252 -18.16133 -17.13722 -16.56076 -15.93475 -15.89018 -15.04459 -14.91228 -14.63168 -14.59596 -14.37314 -13.78410 -13.21780 -12.90553 -12.87679 -12.56363 -12.38550 -12.01472 -11.96761 -11.71591 -11.58546 -11.49996 -11.19240 -11.00105 -10.96045 -10.70973 -10.62294 -10.56193 -10.43175 -10.12344 -9.62336 -9.59918 -9.18725 -8.96754 -8.41291 -8.07871 -6.05350 -4.12233 1.71042 2.52759 2.63936 3.26721 3.29794 3.34197 3.36362 3.73915 3.96790 3.96940 4.17755 4.34100 4.38745 4.64155 5.01510 5.23135 5.24567 5.25294 5.29132 5.53530 5.56633 5.64566 5.64944 5.72493 5.76907 5.90188 6.01178 6.11612 6.20944 6.35781 6.39866 6.56445 6.77058 6.90667 7.13967 7.28647 7.57521 7.65598 7.81009 7.88740 8.02310 8.35910 8.45789 8.91141 9.53271 11.00075 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.003642 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.819641 B = 7686.065695 C = 8355.438465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.125 4.125 11 C 0.099 3.901 12 N -0.590 5.590 13 C 0.570 3.430 14 O -0.544 6.544 15 C -0.149 4.149 16 C -0.078 4.078 17 C -0.155 4.155 18 C 0.548 3.452 19 O -0.506 6.506 20 O -0.507 6.507 21 C -0.060 4.060 22 C -0.077 4.077 23 C 0.109 3.891 24 C -0.123 4.123 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.414 0.586 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 -16.488 0.854 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.163 4.163 11 C -0.023 4.023 12 N -0.321 5.321 13 C 0.357 3.643 14 O -0.423 6.423 15 C -0.152 4.152 16 C -0.115 4.115 17 C -0.156 4.156 18 C 0.390 3.610 19 O -0.394 6.394 20 O -0.319 6.319 21 C -0.098 4.098 22 C -0.115 4.115 23 C -0.012 4.012 24 C -0.162 4.162 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.273 0.727 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.838 -16.244 0.144 16.950 hybrid contribution 0.979 0.423 0.087 1.070 sum 5.817 -15.821 0.231 16.858 Atomic orbital electron populations 1.69832 1.05869 1.26550 1.50638 1.24959 0.94854 0.99089 0.95024 0.86622 0.79871 0.83556 0.78102 1.20732 1.21250 1.19963 1.21174 0.92883 0.90555 1.50621 0.92703 1.18638 0.92591 0.91640 0.94123 1.22024 0.98991 0.94196 1.01072 1.22083 0.91569 0.99909 0.88775 1.48136 1.35829 1.20649 1.27498 1.18388 0.82718 0.81331 0.81909 1.90681 1.40277 1.78683 1.32611 1.23736 0.96483 0.95514 0.99468 1.24650 0.93317 0.89882 1.03690 1.23683 0.96217 0.93616 1.02123 1.21036 0.78152 0.84435 0.77418 1.90740 1.69039 1.37062 1.42532 1.84513 1.47155 1.51332 1.48888 1.23656 0.95386 0.93955 0.96818 1.24146 0.95868 0.95682 0.95803 1.21949 0.91406 0.86283 1.01590 1.22028 1.00082 0.94704 0.99346 0.92910 0.95417 0.92789 0.91976 0.90713 0.91706 0.89253 0.88424 0.72711 0.89476 0.89376 0.88615 0.89551 0.92053 0.90473 0.87736 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.26 11.31 55.43 0.63 -23.63 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -13.29 8.56 -34.44 -0.29 -13.58 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.12 -2.26 5.30 -26.61 -0.14 -2.40 16 11 C 0.10 1.48 6.26 -3.71 -0.02 1.45 16 12 N -0.59 -10.03 2.97 -172.77 -0.51 -10.54 16 13 C 0.57 9.56 7.81 -10.99 -0.09 9.47 16 14 O -0.54 -10.96 16.51 5.55 0.09 -10.87 16 15 C -0.15 -1.86 2.45 -172.26 -0.42 -2.29 16 16 C -0.08 -0.82 7.48 -24.71 -0.18 -1.00 16 17 C -0.16 -1.58 3.61 -170.99 -0.62 -2.20 16 18 C 0.55 5.61 8.44 36.01 0.30 5.92 16 19 O -0.51 -6.60 17.85 -18.74 -0.33 -6.94 16 20 O -0.51 -3.78 13.42 -39.25 -0.53 -4.30 16 21 C -0.06 -0.69 7.77 -26.72 -0.21 -0.90 16 22 C -0.08 -0.76 7.43 -25.99 -0.19 -0.96 16 23 C 0.11 2.09 6.43 -3.71 -0.02 2.06 16 24 C -0.12 -2.74 5.15 -26.61 -0.14 -2.88 16 25 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.89 2.85 -51.92 -0.15 0.75 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 0.91 7.91 -51.93 -0.41 0.50 16 32 H 0.10 0.94 6.46 -51.93 -0.34 0.60 16 33 H 0.41 1.18 9.10 45.56 0.41 1.60 16 34 H 0.09 0.96 7.94 -51.93 -0.41 0.55 16 35 H 0.09 1.00 7.91 -51.92 -0.41 0.59 16 36 H 0.10 0.83 6.82 -51.93 -0.35 0.47 16 37 H 0.09 0.79 7.93 -51.93 -0.41 0.38 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.51 7.01 -51.93 -0.36 1.15 16 40 H 0.10 2.62 6.03 -51.93 -0.31 2.31 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -31.38 331.85 -7.81 -39.19 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.82 Total: 1.42 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.31 Total: -4.85 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.11 Total: -34.17 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.77 Total: -22.11 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.38 -7.81 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.356 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds