Wall clock time and date at job start Tue Mar 31 2020 06:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99632 * 2 1 4 4 H 1.48494 * 109.47312 * 269.99688 * 3 2 1 5 5 H 1.48503 * 109.47161 * 30.00171 * 3 2 1 6 6 H 1.48512 * 109.46885 * 149.99760 * 3 2 1 7 7 C 1.37873 * 120.00470 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.53046 * 109.45702 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.30793 * 178.61215 * 10 9 7 12 12 N 1.46923 * 108.77776 * 54.63922 * 11 10 9 13 13 C 1.34770 * 120.63141 * 126.40957 * 12 11 10 14 14 O 1.21286 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.50695 * 120.00355 * 359.97438 * 13 12 11 16 16 C 1.54893 * 129.08962 * 299.93855 * 15 13 12 17 17 C 1.57174 * 77.91593 * 180.16148 * 16 15 13 18 18 C 1.50704 * 129.24882 * 179.19457 * 17 16 15 19 19 O 1.20817 * 119.99790 * 241.28393 * 18 17 16 20 20 O 1.34228 * 119.99734 * 61.28713 * 18 17 16 21 21 C 1.54409 * 83.73017 * 42.47279 * 17 16 15 22 22 C 1.54885 * 83.77261 * 317.35591 * 17 16 15 23 23 C 1.46927 * 118.73554 * 306.38601 * 12 11 10 24 24 C 1.53031 * 109.46269 * 59.93047 * 9 7 2 25 25 H 0.97002 * 120.00774 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.44749 * 299.96135 * 9 7 2 27 27 H 1.08990 * 109.49711 * 298.56284 * 10 9 7 28 28 H 1.08999 * 109.49785 * 58.66530 * 10 9 7 29 29 H 1.09009 * 109.58115 * 174.42370 * 11 10 9 30 30 H 1.08995 * 109.58619 * 294.84531 * 11 10 9 31 31 H 1.09002 * 114.97772 * 291.95658 * 16 15 13 32 32 H 1.08998 * 114.97599 * 67.13016 * 16 15 13 33 33 H 0.96703 * 117.00061 * 180.02562 * 20 18 17 34 34 H 1.09001 * 114.93394 * 205.05779 * 21 17 16 35 35 H 1.09010 * 114.92889 * 70.03473 * 21 17 16 36 36 H 1.08996 * 116.12895 * 290.12269 * 22 17 16 37 37 H 1.09006 * 113.83199 * 154.95990 * 22 17 16 38 38 H 1.08993 * 109.58956 * 293.82344 * 23 12 11 39 39 H 1.08999 * 109.70338 * 173.46710 * 23 12 11 40 40 H 1.09004 * 109.49984 * 301.34024 * 24 9 7 41 41 H 1.09000 * 109.50061 * 61.43161 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6621 0.0005 11 6 1.4768 -4.9866 0.0356 12 7 0.5225 -5.0089 -1.0813 13 6 0.5116 -6.0352 -1.9548 14 8 -0.2815 -6.0422 -2.8724 15 6 1.4849 -7.1740 -1.7915 16 6 3.0335 -7.1438 -1.7981 17 6 2.7351 -8.6717 -1.5812 18 6 3.6998 -9.8204 -1.4364 19 8 3.6863 -10.7251 -2.2370 20 8 4.5739 -9.8384 -0.4179 21 6 1.6541 -8.4401 -2.6591 22 6 1.6566 -8.1489 -0.6002 23 6 -0.4202 -3.8915 -1.2274 24 6 0.3705 -2.5795 -1.2485 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5565 0.8907 27 1 2.8557 -3.6192 -0.9018 28 1 2.8884 -3.5912 0.8782 29 1 2.1754 -5.8174 -0.0641 30 1 0.9375 -5.0710 0.9789 31 1 3.4851 -6.9004 -2.7598 32 1 3.4873 -6.6246 -0.9539 33 1 5.1730 -10.5958 -0.3668 34 1 0.8154 -9.1355 -2.6257 35 1 2.0378 -8.2609 -3.6636 36 1 2.0243 -7.6924 0.3188 37 1 0.8275 -8.8401 -0.4479 38 1 -1.1143 -3.8866 -0.3870 39 1 -0.9754 -3.9985 -2.1592 40 1 -0.3220 -1.7378 -1.2602 41 1 0.9983 -2.5470 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610620078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:00 Heat of formation + Delta-G solvation = -47.278034 kcal Electronic energy + Delta-G solvation = -23990.299515 eV Core-core repulsion = 20451.948852 eV Total energy + Delta-G solvation = -3538.350663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.50062 -40.96875 -40.30096 -38.33719 -37.12737 -35.34741 -32.90375 -31.95047 -28.58394 -27.63946 -26.96663 -26.91465 -25.34234 -24.13510 -23.28026 -21.36915 -20.32004 -19.41664 -18.93118 -18.44041 -18.13157 -17.32957 -16.69634 -16.51554 -16.20670 -16.09042 -15.51673 -15.32353 -14.94261 -14.81225 -14.60062 -14.26275 -13.92265 -13.68628 -13.31751 -13.09698 -12.82179 -12.73436 -12.66148 -12.47333 -12.44037 -12.29095 -12.13974 -11.93089 -11.89078 -11.46603 -11.41019 -11.39654 -11.04932 -10.83385 -10.67812 -10.38343 -9.57231 -8.05850 -6.19263 0.94436 1.40521 1.42726 1.45007 1.53203 1.75769 2.10478 2.45469 2.90899 3.06210 3.17345 3.21345 3.30081 3.42037 3.54113 4.05627 4.30658 4.34388 4.38447 4.49324 4.51340 4.53860 4.58633 4.67864 4.74511 4.79551 4.82473 4.85059 4.93888 4.97995 5.03020 5.19120 5.28990 5.47961 5.53461 5.54757 5.68947 6.01231 6.13894 6.40622 6.49306 6.92886 6.97685 7.12408 7.49156 8.97514 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.003642 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.819641 B = 7686.065695 C = 8355.438465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.948 3.052 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.105 3.895 12 N -0.593 5.593 13 C 0.569 3.431 14 O -0.586 6.586 15 C -0.171 4.171 16 C -0.070 4.070 17 C -0.143 4.143 18 C 0.558 3.442 19 O -0.540 6.540 20 O -0.497 6.497 21 C -0.068 4.068 22 C -0.062 4.062 23 C 0.120 3.880 24 C -0.112 4.112 25 H 0.259 0.741 26 H 0.005 0.995 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.435 0.565 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.663 -18.020 2.208 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.774 3.226 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.156 4.156 11 C -0.016 4.016 12 N -0.323 5.323 13 C 0.358 3.642 14 O -0.467 6.467 15 C -0.174 4.174 16 C -0.107 4.107 17 C -0.145 4.145 18 C 0.401 3.599 19 O -0.430 6.430 20 O -0.311 6.311 21 C -0.106 4.106 22 C -0.099 4.099 23 C -0.003 4.003 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.298 0.702 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.851 -17.794 1.535 19.129 hybrid contribution 0.378 0.908 -0.342 1.041 sum 7.229 -16.885 1.193 18.407 Atomic orbital electron populations 1.69969 1.07050 1.27006 1.51556 1.25686 0.95597 1.02183 0.95065 0.85713 0.78977 0.79977 0.77906 1.20779 1.21226 1.19047 1.21604 0.93138 0.92111 1.49979 0.92752 1.18626 0.93184 0.92695 0.92949 1.21891 0.98161 0.93954 1.01546 1.22194 0.91601 0.99279 0.88558 1.48156 1.35770 1.20070 1.28327 1.19002 0.82685 0.81842 0.80699 1.90655 1.42215 1.79675 1.34189 1.23575 0.96966 0.94778 1.02108 1.24693 0.91301 0.90189 1.04565 1.23439 0.95999 0.93491 1.01523 1.20872 0.78102 0.83650 0.77318 1.90744 1.70075 1.38270 1.43916 1.84458 1.46843 1.52508 1.47311 1.23732 0.96206 0.93515 0.97108 1.24175 0.95908 0.94496 0.95331 1.21597 0.91494 0.85853 1.01332 1.21780 0.99344 0.95397 0.98544 0.93143 0.97666 0.93224 0.90496 0.86918 0.90309 0.89233 0.86663 0.70224 0.89424 0.89931 0.86405 0.88644 0.91610 0.91442 0.90990 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.15 11.31 21.45 0.24 -50.91 16 2 C 0.01 0.71 5.30 84.65 0.45 1.16 16 3 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.53 -27.53 8.56 25.60 0.22 -27.31 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 9 C 0.04 2.01 2.06 -11.51 -0.02 1.99 16 10 C -0.12 -4.04 5.30 30.67 0.16 -3.88 16 11 C 0.11 2.83 6.26 86.36 0.54 3.37 16 12 N -0.59 -19.50 2.97 -818.91 -2.43 -21.93 16 13 C 0.57 18.53 7.81 87.66 0.68 19.22 16 14 O -0.59 -23.87 16.51 -3.05 -0.05 -23.92 16 15 C -0.17 -3.90 2.45 -63.68 -0.16 -4.05 16 16 C -0.07 -1.24 7.48 31.90 0.24 -1.00 16 17 C -0.14 -2.47 3.61 -62.86 -0.23 -2.69 16 18 C 0.56 9.69 8.44 71.24 0.60 10.29 16 19 O -0.54 -12.97 17.85 21.99 0.39 -12.58 16 20 O -0.50 -5.40 13.42 -51.40 -0.69 -6.09 16 21 C -0.07 -1.44 7.77 30.60 0.24 -1.20 16 22 C -0.06 -0.98 7.43 31.08 0.23 -0.75 16 23 C 0.12 4.66 6.43 86.36 0.56 5.22 16 24 C -0.11 -5.14 5.15 30.67 0.16 -4.98 16 25 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.11 2.19 2.85 -2.38 -0.01 2.18 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.61 7.91 -2.39 -0.02 1.59 16 32 H 0.12 1.65 6.46 -2.39 -0.02 1.63 16 33 H 0.43 0.83 9.10 -74.06 -0.67 0.15 16 34 H 0.09 1.82 7.94 -2.39 -0.02 1.80 16 35 H 0.08 1.81 7.91 -2.38 -0.02 1.79 16 36 H 0.12 1.38 6.82 -2.39 -0.02 1.36 16 37 H 0.10 1.39 7.93 -2.38 -0.02 1.37 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.07 2.75 7.01 -2.39 -0.02 2.73 16 40 H 0.07 3.78 6.03 -2.38 -0.01 3.77 16 41 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -69.63 331.85 3.55 -66.08 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.39 Total: 9.61 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 3.67 Total: -4.62 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -2.19 Total: -72.84 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.35 Total: -42.59 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.63 3.55 -66.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.800 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds