Wall clock time and date at job start Tue Mar 31 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.30913 * 121.83669 * 2 1 4 4 S 1.75781 * 109.81577 * 180.02562 * 3 2 1 5 5 C 1.76250 * 90.70100 * 359.97438 * 4 3 2 6 6 N 1.32358 * 141.95355 * 179.97438 * 5 4 3 7 7 C 1.33871 * 109.13558 * 179.78572 * 6 5 4 8 8 C 1.50701 * 125.80777 * 180.26627 * 7 6 5 9 9 C 1.34329 * 108.38986 * 0.39999 * 7 6 5 10 10 C 1.50697 * 126.44046 * 179.87922 * 9 7 6 11 11 N 1.46900 * 109.47078 * 269.68207 * 10 9 7 12 12 C 1.46901 * 111.00171 * 66.04191 * 11 10 9 13 13 C 1.46898 * 111.00488 * 190.00075 * 11 10 9 14 14 H 1.09000 * 109.46968 * 54.99740 * 13 11 10 15 15 C 1.53003 * 109.46892 * 295.00068 * 13 11 10 16 16 C 1.50701 * 109.47361 * 174.99924 * 13 11 10 17 17 H 1.07997 * 119.99841 * 5.58213 * 16 13 11 18 18 C 1.37875 * 119.99949 * 185.58281 * 16 13 11 19 19 N 1.31520 * 119.99891 * 198.63837 * 18 16 13 20 20 Si 1.86800 * 120.00226 * 18.63675 * 18 16 13 21 21 H 1.48499 * 109.47075 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.46946 * 300.00257 * 20 18 16 23 23 H 1.48499 * 109.47185 * 59.99855 * 20 18 16 24 24 N 1.35149 * 109.22311 * 359.97438 * 5 4 3 25 25 H 1.08997 * 109.46867 * 269.97966 * 1 2 3 26 26 H 1.09001 * 109.47107 * 29.97554 * 1 2 3 27 27 H 1.08998 * 109.47260 * 149.97912 * 1 2 3 28 28 H 1.07991 * 125.09414 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47389 * 270.15817 * 8 7 6 30 30 H 1.09007 * 109.46646 * 30.15453 * 8 7 6 31 31 H 1.08999 * 109.47238 * 150.15079 * 8 7 6 32 32 H 1.09003 * 109.47236 * 149.68437 * 10 9 7 33 33 H 1.09001 * 109.47560 * 29.68127 * 10 9 7 34 34 H 1.08993 * 109.47517 * 183.95386 * 12 11 10 35 35 H 1.09003 * 109.46852 * 303.96205 * 12 11 10 36 36 H 1.09001 * 109.46596 * 63.95322 * 12 11 10 37 37 H 1.09003 * 109.46856 * 294.32022 * 15 13 11 38 38 H 1.08998 * 109.47315 * 54.32088 * 15 13 11 39 39 H 1.09001 * 109.46632 * 174.32150 * 15 13 11 40 40 H 0.97003 * 119.99670 * 354.95911 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1122 0.0000 4 16 3.9169 0.7461 -0.0007 5 6 3.5709 -0.9821 -0.0002 6 7 4.1662 -2.1643 -0.0006 7 6 3.2339 -3.1250 0.0051 8 6 3.4970 -4.6089 0.0123 9 6 2.0240 -2.5415 0.0003 10 6 0.6911 -3.2447 0.0014 11 7 0.2567 -3.4729 -1.3833 12 6 1.1500 -4.4182 -2.0662 13 6 -1.1359 -3.9383 -1.4283 14 1 -1.7731 -3.2294 -0.8996 15 6 -1.2367 -5.3111 -0.7605 16 6 -1.5842 -4.0435 -2.8632 17 1 -0.8779 -3.8776 -3.6632 18 6 -2.8961 -4.3515 -3.1547 19 7 -3.2165 -4.8006 -4.3486 20 14 -4.2186 -4.1309 -1.8540 21 1 -5.5349 -4.5297 -2.4138 22 1 -3.9031 -4.9814 -0.6782 23 1 -4.2688 -2.7070 -1.4356 24 7 2.2322 -1.1680 0.0010 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.7744 2.1057 -0.0004 29 1 3.5623 -4.9714 -1.0136 30 1 4.4359 -4.8088 0.5287 31 1 2.6833 -5.1197 0.5271 32 1 -0.0451 -2.6271 0.5159 33 1 0.7854 -4.2015 0.5149 34 1 0.8476 -4.5155 -3.1088 35 1 2.1746 -4.0494 -2.0179 36 1 1.0908 -5.3912 -1.5784 37 1 -0.6802 -6.0422 -1.3471 38 1 -0.8187 -5.2578 0.2448 39 1 -2.2829 -5.6114 -0.7035 40 1 -2.5440 -4.8461 -5.0462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658955375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:18 Heat of formation + Delta-G solvation = 81.038144 kcal Electronic energy + Delta-G solvation = -22125.777887 eV Core-core repulsion = 19068.037053 eV Total energy + Delta-G solvation = -3057.740834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.78892 -39.25376 -38.18082 -35.00009 -33.16056 -32.60679 -30.78497 -30.14930 -28.59997 -26.98062 -26.84808 -25.11375 -23.77557 -21.54133 -21.21815 -20.09454 -19.37321 -18.98842 -17.63497 -16.73151 -16.65126 -16.05848 -15.64537 -15.47896 -15.41313 -14.75958 -14.62904 -14.41728 -14.12385 -13.89282 -13.83162 -13.58900 -13.52768 -13.30496 -13.09272 -13.03121 -12.52463 -12.42720 -12.23238 -12.14365 -12.07616 -11.69768 -11.60108 -11.37527 -11.17260 -10.99761 -10.30636 -9.67409 -9.04308 -8.73213 -8.52653 -6.28763 -0.13233 -0.07740 0.67473 1.18191 1.47152 1.55297 1.55505 1.69881 1.73464 2.52313 3.11294 3.25407 3.39682 3.54118 3.82366 4.03154 4.08318 4.29824 4.33646 4.40672 4.51789 4.58921 4.60901 4.63351 4.65092 4.72310 4.74120 4.83227 4.86616 4.90351 5.02528 5.05428 5.21045 5.30085 5.51160 5.54578 5.79062 5.88614 6.08119 6.23833 6.50512 6.64097 6.74836 7.48444 8.69008 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.005035 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.372827 B = 5559.754051 C = 6332.683283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.065 3.935 3 C -0.215 4.215 4 S 0.201 5.799 5 C 0.108 3.892 6 N -0.490 5.490 7 C 0.032 3.968 8 C -0.067 4.067 9 C -0.010 4.010 10 C 0.128 3.872 11 N -0.535 5.535 12 C 0.045 3.955 13 C 0.191 3.809 14 H 0.038 0.962 15 C -0.182 4.182 16 C -0.583 4.583 17 H 0.019 0.981 18 C -0.021 4.021 19 N -0.941 5.941 20 Si 1.081 2.919 21 H -0.295 1.295 22 H -0.240 1.240 23 H -0.262 1.262 24 N -0.398 5.398 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.235 0.765 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.570 10.426 14.510 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.044 4.044 3 C -0.351 4.351 4 S 0.450 5.550 5 C -0.258 4.258 6 N -0.215 5.215 7 C -0.099 4.099 8 C -0.125 4.125 9 C -0.125 4.125 10 C 0.000 4.000 11 N -0.259 5.259 12 C -0.103 4.103 13 C 0.083 3.917 14 H 0.055 0.945 15 C -0.241 4.241 16 C -0.621 4.621 17 H 0.037 0.963 18 C -0.219 4.219 19 N -0.578 5.578 20 Si 0.903 3.097 21 H -0.221 1.221 22 H -0.164 1.164 23 H -0.186 1.186 24 N -0.077 5.077 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.081 0.919 28 H 0.252 0.748 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.945 11.313 14.549 20.942 hybrid contribution -0.216 -1.410 -0.926 1.700 sum 9.729 9.904 13.623 19.451 Atomic orbital electron populations 1.20861 0.85257 1.05382 1.04665 1.19581 0.97387 0.82911 1.04571 1.25273 0.95396 1.02890 1.11556 1.84358 1.03855 0.84849 1.81934 1.26770 0.83743 1.02700 1.12545 1.70408 1.32362 0.95519 1.23257 1.20948 0.87407 0.97130 1.04449 1.20292 1.03560 0.85471 1.03160 1.21196 0.98149 0.79419 1.13701 1.20478 0.90025 0.98381 0.91140 1.62148 1.03180 1.47238 1.13309 1.22201 0.95701 0.93953 0.98419 1.19482 0.85657 0.91375 0.95164 0.94465 1.22742 1.01873 1.00323 0.99138 1.22070 0.96207 1.51689 0.92109 0.96287 1.27114 1.01253 0.91797 1.01716 1.71009 1.38600 1.42794 1.05387 0.83642 0.73109 0.78776 0.74215 1.22137 1.16428 1.18643 1.43784 1.07185 1.06103 1.50670 0.88307 0.86997 0.91919 0.74826 0.90645 0.89902 0.89679 0.89733 0.91151 0.94477 0.92161 0.94734 0.94099 0.92324 0.92806 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 9.62 71.24 0.69 -1.49 16 2 C 0.06 1.59 6.75 41.72 0.28 1.87 16 3 C -0.21 -3.91 10.80 67.87 0.73 -3.18 16 4 S 0.20 4.38 23.37 -56.49 -1.32 3.06 16 5 C 0.11 3.44 8.93 179.68 1.60 5.04 16 6 N -0.49 -17.32 11.32 -184.83 -2.09 -19.41 16 7 C 0.03 1.04 6.14 41.35 0.25 1.29 16 8 C -0.07 -1.74 9.11 71.24 0.65 -1.09 16 9 C -0.01 -0.32 6.08 40.54 0.25 -0.07 16 10 C 0.13 4.11 3.96 85.56 0.34 4.45 16 11 N -0.54 -21.18 4.73 -906.04 -4.29 -25.47 16 12 C 0.05 1.78 7.87 127.69 1.00 2.78 16 13 C 0.19 8.35 1.93 44.17 0.09 8.43 16 14 H 0.04 1.59 6.67 -2.39 -0.02 1.58 16 15 C -0.18 -7.11 8.12 71.98 0.58 -6.52 16 16 C -0.58 -31.91 8.31 25.60 0.21 -31.70 16 17 H 0.02 1.18 6.78 -2.91 -0.02 1.16 16 18 C -0.02 -1.19 5.33 84.65 0.45 -0.74 16 19 N -0.94 -58.23 13.70 21.45 0.29 -57.94 16 20 Si 1.08 47.32 26.47 68.60 1.82 49.14 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.24 -9.11 5.53 99.48 0.55 -8.56 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 N -0.40 -12.49 3.19 -329.20 -1.05 -13.54 16 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.11 1.78 8.10 -2.39 -0.02 1.76 16 27 H 0.06 1.79 6.54 -2.39 -0.02 1.78 16 28 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.07 1.95 6.87 -2.39 -0.02 1.93 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 1.93 7.12 -2.39 -0.02 1.92 16 32 H 0.08 2.54 6.62 -2.39 -0.02 2.52 16 33 H 0.07 2.05 5.79 -2.39 -0.01 2.04 16 34 H 0.04 1.70 6.43 -2.39 -0.02 1.68 16 35 H 0.06 2.22 4.80 -2.39 -0.01 2.21 16 36 H 0.03 1.24 6.41 -2.39 -0.02 1.22 16 37 H 0.04 1.67 6.71 -2.39 -0.02 1.65 16 38 H 0.06 1.87 6.49 -2.39 -0.02 1.85 16 39 H 0.05 2.15 4.89 -2.39 -0.01 2.14 16 40 H 0.25 15.80 8.73 -92.71 -0.81 14.99 16 Total: -1.00 -71.37 318.74 1.36 -70.00 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.87 Total: 15.07 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 7.13 Total: -20.91 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -7.14 Total: -116.36 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.82 Total: 49.14 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.32 Total: 3.06 kcal Total: -71.37 1.36 -70.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658955375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.042 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds