Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47199 * 300.00388 * 15 13 12 17 17 C 1.53004 * 109.47093 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.46875 * 59.99876 * 17 16 15 19 19 C 1.53002 * 109.47209 * 179.97438 * 18 17 16 20 20 F 1.39891 * 109.47026 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.46877 * 300.00294 * 19 18 17 22 22 F 1.39905 * 109.46769 * 59.99898 * 19 18 17 23 23 C 1.52998 * 109.47124 * 300.00240 * 18 17 16 24 24 C 1.52993 * 109.46949 * 179.97438 * 15 13 12 25 25 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 27 27 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 30 30 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 31 31 H 1.08997 * 109.47242 * 299.99673 * 16 15 13 32 32 H 1.09005 * 109.47526 * 59.99705 * 16 15 13 33 33 H 1.08997 * 109.47081 * 300.00104 * 17 16 15 34 34 H 1.08994 * 109.47254 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46773 * 59.99785 * 18 17 16 36 36 H 1.09007 * 109.46685 * 299.99650 * 23 18 17 37 37 H 1.09001 * 109.46840 * 179.97438 * 23 18 17 38 38 H 1.08994 * 109.47305 * 300.00298 * 24 15 13 39 39 H 1.08997 * 109.46991 * 60.00633 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 6 1.7043 -1.8822 3.9315 17 6 2.2142 -2.6040 5.1806 18 6 2.2661 -1.6210 6.3520 19 6 2.7753 -2.3429 7.6012 20 9 2.8234 -1.4440 8.6721 21 9 1.9113 -3.3974 7.9152 22 9 4.0575 -2.8471 7.3583 23 6 3.2106 -0.4675 6.0083 24 6 2.7009 0.2546 4.7588 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.9028 -0.5285 -4.4375 29 1 2.2491 -1.6317 1.1527 30 1 3.6480 -1.1212 3.3987 31 1 0.7052 -1.4898 4.1206 32 1 1.6676 -2.5827 3.0971 33 1 3.2132 -2.9965 4.9910 34 1 1.5411 -3.4255 5.4256 35 1 1.2671 -1.2285 6.5414 36 1 4.2097 -0.8601 5.8188 37 1 3.2472 0.2330 6.8426 38 1 3.3740 1.0762 4.5137 39 1 1.7020 0.6475 4.9480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216308708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = -219.692085 kcal Electronic energy + Delta-G solvation = -24292.474728 eV Core-core repulsion = 20204.790891 eV Total energy + Delta-G solvation = -4087.683838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.33797 -47.82376 -47.79456 -39.90837 -37.81456 -35.03943 -32.66310 -32.04515 -31.06741 -29.70082 -26.25934 -25.19869 -23.02474 -22.98023 -21.16346 -20.26700 -19.48877 -18.51615 -18.46947 -17.80832 -17.36066 -16.07441 -15.67832 -15.21457 -14.87194 -14.71777 -14.55919 -14.30143 -14.14716 -13.96675 -13.96516 -13.77437 -13.65152 -13.31125 -12.92054 -12.67974 -12.48025 -12.43210 -12.22219 -11.79088 -11.60298 -11.40846 -11.24326 -11.10787 -10.84249 -10.65631 -10.42368 -10.20861 -9.71871 -9.25319 -9.07861 -8.77783 -8.17300 -6.23142 -4.25744 2.52297 3.18590 3.22111 3.33814 3.38077 3.51880 3.73359 3.79066 3.91226 4.29668 4.41098 4.46242 4.78270 4.86352 4.93227 5.04817 5.07792 5.11934 5.21042 5.32131 5.55350 5.66207 5.68235 5.69803 5.89500 5.94067 6.13743 6.24914 6.28886 6.35673 6.53856 6.83452 7.16972 7.27448 7.50202 8.13015 8.51049 8.73767 8.91968 9.37888 10.89039 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.038261 B = 0.003231 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.634484 B = 8663.754634 C = 8889.896101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.701 5.701 13 C 0.507 3.493 14 O -0.556 6.556 15 C -0.112 4.112 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.133 4.133 19 C 0.452 3.548 20 F -0.185 7.185 21 F -0.185 7.185 22 F -0.183 7.183 23 C -0.118 4.118 24 C -0.093 4.093 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.395 0.605 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -3.948 21.242 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.132 3.868 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.222 1.222 12 N -0.348 5.348 13 C 0.292 3.708 14 O -0.436 6.436 15 C -0.133 4.133 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.152 4.152 19 C 0.398 3.602 20 F -0.167 7.167 21 F -0.167 7.167 22 F -0.164 7.164 23 C -0.156 4.156 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.228 0.772 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.341 -3.130 21.068 21.302 hybrid contribution -0.416 0.076 -0.079 0.430 sum -0.075 -3.054 20.989 21.211 Atomic orbital electron populations 1.22440 0.99352 1.00786 0.99259 1.19094 0.90101 0.94674 0.82929 0.93451 1.21045 1.33287 1.14425 0.88574 0.90228 1.24840 0.95491 0.96697 0.95537 1.69870 1.44891 1.40113 0.98056 0.86869 0.80512 0.83618 0.77439 1.20318 1.18688 1.22155 1.46215 1.64985 1.13797 1.09833 1.20421 0.78371 0.87363 0.84681 1.90649 1.51390 1.16199 1.85323 1.21407 1.01041 0.96718 0.94177 1.21476 0.99111 0.96515 0.97307 1.21620 1.03450 0.97034 0.93278 1.22580 1.03194 0.97941 0.91525 1.20720 0.75614 0.77609 0.86208 1.93170 1.96290 1.67676 1.59556 1.93173 1.70001 1.59462 1.94047 1.93170 1.40736 1.88196 1.94314 1.21668 0.98568 0.95800 0.99535 1.21268 1.03043 0.97211 0.91562 0.92856 0.94616 0.93504 0.92278 0.77194 0.88512 0.90898 0.90147 0.90215 0.90272 0.86685 0.90443 0.90400 0.90252 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.97 37.16 0.33 -3.17 16 2 C 0.24 5.49 2.15 -69.08 -0.15 5.34 16 3 H 0.05 1.23 6.63 -51.93 -0.34 0.89 16 4 C -0.54 -14.23 9.31 -34.44 -0.32 -14.56 16 5 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 8 Si 0.89 21.58 24.37 -169.99 -4.14 17.43 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.26 -6.35 6.53 56.52 0.37 -5.99 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 N -0.70 -13.19 4.96 -54.93 -0.27 -13.46 16 13 C 0.51 8.85 7.12 -10.98 -0.08 8.77 16 14 O -0.56 -11.89 15.64 5.56 0.09 -11.80 16 15 C -0.11 -1.34 2.52 -91.78 -0.23 -1.57 16 16 C -0.11 -1.03 5.10 -26.73 -0.14 -1.17 16 17 C -0.12 -0.93 4.96 -26.73 -0.13 -1.06 16 18 C -0.13 -1.07 2.16 -90.62 -0.20 -1.27 16 19 C 0.45 4.09 2.69 37.16 0.10 4.19 16 20 F -0.19 -1.81 16.80 2.25 0.04 -1.77 16 21 F -0.19 -1.80 16.80 2.25 0.04 -1.76 16 22 F -0.18 -1.79 16.28 2.25 0.04 -1.75 16 23 C -0.12 -1.00 4.96 -26.71 -0.13 -1.14 16 24 C -0.09 -1.02 4.50 -26.71 -0.12 -1.14 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 1.06 3.27 -51.93 -0.17 0.90 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 6.48 7.96 -40.82 -0.32 6.15 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.76 7.57 -51.93 -0.39 0.37 16 33 H 0.08 0.62 7.80 -51.93 -0.41 0.22 16 34 H 0.08 0.58 7.80 -51.93 -0.41 0.18 16 35 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.64 7.80 -51.93 -0.41 0.23 16 37 H 0.08 0.61 7.80 -51.93 -0.41 0.21 16 38 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16 LS Contribution 319.05 15.07 4.81 4.81 Total: -1.00 -30.79 319.05 -5.20 -35.99 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.41 Total: 2.42 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.16 Total: -4.70 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.50 Total: -38.87 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.11 Total: -5.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.79 -5.20 -35.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216308708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.700 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds