Wall clock time and date at job start Tue Mar 31 2020 07:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35315 * 128.03935 * 2 1 4 4 O 1.34022 * 106.66915 * 180.02562 * 3 2 1 5 5 N 1.20909 * 111.84316 * 359.70463 * 4 3 2 6 6 C 1.30988 * 111.43890 * 0.48926 * 5 4 3 7 7 C 1.48333 * 126.93597 * 179.79697 * 6 5 4 8 8 O 1.21498 * 119.99546 * 179.68707 * 7 6 5 9 9 N 1.34771 * 120.00082 * 359.68247 * 7 6 5 10 10 C 1.46500 * 119.99929 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.44920 * 324.96317 * 10 9 7 12 12 C 1.53031 * 109.48661 * 84.91699 * 10 9 7 13 13 C 1.53199 * 109.33902 * 181.35132 * 12 10 9 14 14 N 1.46924 * 108.77733 * 305.38103 * 13 12 10 15 15 C 1.36936 * 120.63337 * 233.63135 * 14 13 12 16 16 H 1.07990 * 120.00299 * 150.13963 * 15 14 13 17 17 C 1.38817 * 119.99532 * 330.14057 * 15 14 13 18 18 N 1.31620 * 120.00286 * 344.50497 * 17 15 14 19 19 Si 1.86796 * 119.99904 * 164.50000 * 17 15 14 20 20 H 1.48504 * 109.47080 * 90.00231 * 19 17 15 21 21 H 1.48501 * 109.47532 * 210.00324 * 19 17 15 22 22 H 1.48500 * 109.47310 * 330.00428 * 19 17 15 23 23 C 1.46929 * 118.73678 * 53.60918 * 14 13 12 24 24 H 1.08991 * 109.58740 * 66.17801 * 23 14 13 25 25 C 1.53000 * 109.58240 * 186.60505 * 23 14 13 26 26 C 1.53044 * 109.45876 * 205.00171 * 10 9 7 27 27 H 1.09007 * 109.46833 * 269.97300 * 1 2 3 28 28 H 1.09007 * 109.47339 * 29.96736 * 1 2 3 29 29 H 1.08994 * 109.47560 * 149.97149 * 1 2 3 30 30 H 1.07996 * 126.67200 * 0.02562 * 3 2 1 31 31 H 0.97005 * 119.99950 * 0.02562 * 9 7 6 32 32 H 1.09005 * 109.47145 * 61.40528 * 12 10 9 33 33 H 1.09002 * 109.52674 * 301.33511 * 12 10 9 34 34 H 1.09007 * 109.58629 * 185.59140 * 13 12 10 35 35 H 1.08997 * 109.69892 * 65.24351 * 13 12 10 36 36 H 0.96999 * 119.99943 * 179.97438 * 18 17 15 37 37 H 1.09006 * 109.46748 * 179.29177 * 25 23 14 38 38 H 1.09001 * 109.46813 * 299.28525 * 25 23 14 39 39 H 1.08993 * 109.47262 * 59.29132 * 25 23 14 40 40 H 1.09003 * 109.49522 * 58.66321 * 26 10 9 41 41 H 1.08996 * 109.50145 * 298.60106 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5889 0.5774 -0.0006 5 7 3.5988 -0.6317 0.0049 6 6 2.3836 -1.1205 -0.0006 7 6 1.9991 -2.5532 -0.0009 8 8 0.8254 -2.8671 -0.0006 9 7 2.9517 -3.5065 -0.0015 10 6 2.5720 -4.9215 -0.0023 11 1 1.6651 -5.0542 0.5878 12 6 2.3161 -5.3805 -1.4395 13 6 1.8866 -6.8511 -1.4335 14 7 2.9025 -7.6376 -0.7207 15 6 3.4784 -8.7313 -1.3100 16 1 4.4895 -9.0121 -1.0554 17 6 2.7622 -9.4790 -2.2347 18 7 1.4567 -9.3386 -2.3252 19 14 3.6515 -10.6843 -3.3508 20 1 3.7125 -12.0148 -2.6939 21 1 2.9190 -10.8007 -4.6374 22 1 5.0300 -10.1959 -3.6085 23 6 3.2891 -7.2279 0.6363 24 1 2.4435 -7.3569 1.3118 25 6 4.4656 -8.0815 1.1140 26 6 3.7029 -5.7532 0.6071 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 2.0560 2.1075 0.0004 31 1 3.8888 -3.2558 -0.0014 32 1 3.2296 -5.2708 -2.0241 33 1 1.5263 -4.7727 -1.8810 34 1 1.7994 -7.2104 -2.4590 35 1 0.9260 -6.9512 -0.9283 36 1 0.9564 -9.8608 -2.9716 37 1 4.7590 -7.7676 2.1158 38 1 4.1691 -9.1302 1.1340 39 1 5.3068 -7.9546 0.4326 40 1 3.9000 -5.4105 1.6229 41 1 4.6036 -5.6400 0.0038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947900708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:37 Heat of formation + Delta-G solvation = 41.042370 kcal Electronic energy + Delta-G solvation = -23807.925985 eV Core-core repulsion = 20305.697933 eV Total energy + Delta-G solvation = -3502.228052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.28462 -39.73511 -37.69739 -34.96390 -34.60687 -32.79666 -32.27618 -31.20970 -29.53120 -28.36221 -26.43446 -25.35851 -24.20322 -22.06551 -21.82954 -21.13975 -20.11431 -19.39784 -18.30011 -17.97443 -16.66162 -16.25016 -15.83426 -15.08612 -14.73063 -14.60796 -13.97260 -13.83453 -13.63630 -13.45979 -13.42943 -13.27295 -12.82400 -12.70734 -12.56321 -11.60753 -11.56903 -11.23116 -11.13109 -10.95695 -10.90693 -10.65216 -10.46432 -10.33080 -10.21835 -10.09029 -10.02586 -9.75037 -9.67868 -9.41830 -8.78250 -8.42849 -6.63351 -5.76960 -3.21103 0.98072 1.47913 2.84010 3.07583 3.18562 3.37987 3.45318 3.46959 3.83514 4.42773 4.49712 4.64346 4.86678 5.16735 5.27950 5.36275 5.41582 5.43878 5.44929 5.55779 5.60457 5.76049 5.96094 6.05611 6.14915 6.21594 6.31543 6.37754 6.41661 6.49861 6.61979 6.76759 6.83522 7.02173 7.09977 7.36598 7.51022 7.68123 7.83323 7.83760 8.19352 8.47612 9.22805 9.86298 10.43718 11.31920 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027739 B = 0.003466 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.173301 B = 8076.181433 C = 8393.997217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.150 4.150 3 C -0.072 4.072 4 O 0.121 5.879 5 N -0.332 5.332 6 C -0.025 4.025 7 C 0.593 3.407 8 O -0.520 6.520 9 N -0.707 5.707 10 C 0.150 3.850 11 H 0.085 0.915 12 C -0.147 4.147 13 C 0.176 3.824 14 N -0.588 5.588 15 C -0.252 4.252 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.172 3.828 24 H 0.028 0.972 25 C -0.135 4.135 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.223 0.777 31 H 0.401 0.599 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.022 0.978 36 H 0.253 0.747 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 19.907 5.657 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 C -0.152 4.152 4 O 0.046 5.954 5 N -0.033 5.033 6 C -0.184 4.184 7 C 0.376 3.624 8 O -0.394 6.394 9 N -0.357 5.357 10 C 0.048 3.952 11 H 0.103 0.897 12 C -0.188 4.188 13 C 0.050 3.950 14 N -0.311 5.311 15 C -0.382 4.382 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.064 3.936 24 H 0.045 0.955 25 C -0.193 4.193 26 C -0.175 4.175 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.239 0.761 31 H 0.235 0.765 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.135 18.912 5.553 19.825 hybrid contribution 0.059 -0.156 -0.670 0.690 sum 2.193 18.755 4.883 19.504 Atomic orbital electron populations 1.20234 0.86524 1.03988 1.03242 1.21409 0.99209 0.90133 1.04766 1.25771 0.82455 1.01269 1.05736 1.84768 1.29474 1.15288 1.65872 1.74167 1.21729 0.91587 1.15835 1.23666 0.89409 0.97563 1.07785 1.16889 0.85934 0.82150 0.77423 1.90790 1.17360 1.81473 1.49794 1.46247 1.09303 1.07069 1.73033 1.21162 0.98830 0.76688 0.98566 0.89714 1.22592 1.00912 1.00803 0.94443 1.20731 0.90073 0.84863 0.99371 1.44165 1.46681 1.29925 1.10321 1.19151 0.95611 1.03266 1.20173 0.91273 1.25108 0.94953 0.97834 1.01626 1.70021 1.04838 1.42896 1.36841 0.86342 0.79061 0.81190 0.80428 1.21418 1.21622 1.20516 1.20356 0.95069 0.89833 0.88310 0.95461 1.21788 0.98228 1.00880 0.98373 1.22403 0.97647 0.98105 0.99304 0.90536 0.91080 0.89221 0.76109 0.76485 0.92557 0.92814 0.89314 0.96023 0.93650 0.94286 0.91817 0.92732 0.92588 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.15 -1.61 6.34 -104.12 -0.66 -2.27 16 3 C -0.07 -0.54 12.24 29.69 0.36 -0.18 16 4 O 0.12 1.22 11.18 17.23 0.19 1.41 16 5 N -0.33 -4.23 11.84 33.30 0.39 -3.84 16 6 C -0.02 -0.34 7.19 -82.52 -0.59 -0.93 16 7 C 0.59 9.63 7.81 -12.11 -0.09 9.54 16 8 O -0.52 -9.74 15.00 5.37 0.08 -9.66 16 9 N -0.71 -11.05 5.08 -54.56 -0.28 -11.33 16 10 C 0.15 2.69 2.42 -67.89 -0.16 2.53 16 11 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 12 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 13 C 0.18 4.26 5.28 -3.71 -0.02 4.24 16 14 N -0.59 -14.45 2.99 -164.77 -0.49 -14.94 16 15 C -0.25 -6.74 8.58 -15.06 -0.13 -6.87 16 16 H 0.07 1.79 6.23 -52.49 -0.33 1.47 16 17 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 18 N -0.90 -26.17 11.23 55.49 0.62 -25.54 16 19 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.17 3.52 3.50 -67.60 -0.24 3.29 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 C -0.14 -2.50 7.95 37.16 0.30 -2.21 16 26 C -0.13 -2.32 4.84 -26.61 -0.13 -2.45 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.09 1.05 6.89 -51.93 -0.36 0.69 16 30 H 0.22 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.40 5.58 8.36 -40.82 -0.34 5.24 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.09 2.40 6.15 -51.92 -0.32 2.08 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 1.27 7.67 -51.93 -0.40 0.88 16 39 H 0.05 1.02 7.40 -51.93 -0.38 0.63 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -31.40 334.88 -6.59 -37.99 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.88 Total: 3.12 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.24 Total: 1.17 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.25 Total: -55.64 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.27 Total: -8.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.40 -6.59 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947900708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.032 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds