Wall clock time and date at job start Tue Mar 31 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30007 * 127.33395 * 2 1 4 4 O 1.20660 * 112.30313 * 180.27463 * 3 2 1 5 5 C 1.33493 * 113.15071 * 359.73076 * 4 3 2 6 6 C 1.50703 * 126.82602 * 180.02562 * 5 4 3 7 7 C 1.37361 * 106.34628 * 0.02562 * 5 4 3 8 8 C 1.47396 * 128.56865 * 179.97438 * 7 5 4 9 9 O 1.21608 * 119.99943 * 89.99321 * 8 7 5 10 10 N 1.34775 * 119.99844 * 270.00298 * 8 7 5 11 11 C 1.47426 * 125.64633 * 179.97438 * 10 8 7 12 12 C 1.54910 * 104.83306 * 155.91253 * 11 10 8 13 13 H 1.08999 * 111.03912 * 278.92834 * 12 11 10 14 14 C 1.52993 * 111.00342 * 155.08481 * 12 11 10 15 15 C 1.55164 * 101.57995 * 37.01076 * 12 11 10 16 16 H 1.08995 * 110.71818 * 205.95670 * 15 12 11 17 17 N 1.46499 * 110.71873 * 82.86049 * 15 12 11 18 18 C 1.36931 * 120.00122 * 155.00085 * 17 15 12 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47016 * 125.65109 * 0.04837 * 10 8 7 27 27 H 1.08999 * 109.47300 * 270.14570 * 1 2 3 28 28 H 1.09004 * 109.47093 * 30.15277 * 1 2 3 29 29 H 1.09005 * 109.47265 * 150.14729 * 1 2 3 30 30 H 1.09002 * 109.47081 * 269.99991 * 6 5 4 31 31 H 1.08996 * 109.47405 * 29.99896 * 6 5 4 32 32 H 1.08997 * 109.46798 * 150.00633 * 6 5 4 33 33 H 1.09009 * 110.36585 * 37.07854 * 11 10 8 34 34 H 1.08993 * 110.46239 * 274.80070 * 11 10 8 35 35 H 1.09000 * 109.47275 * 307.80490 * 14 12 11 36 36 H 1.08999 * 109.47291 * 67.80741 * 14 12 11 37 37 H 1.09009 * 109.46939 * 187.81069 * 14 12 11 38 38 H 0.97001 * 119.99790 * 334.99602 * 17 15 12 39 39 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.88636 * 61.59876 * 26 10 8 41 41 H 1.09006 * 109.88465 * 300.43595 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6494 -0.6008 -0.0041 6 6 4.9712 -1.3246 -0.0091 7 6 2.3991 -1.1696 0.0025 8 6 2.0400 -2.5992 0.0059 9 8 1.8970 -3.1877 1.0604 10 7 1.8703 -3.2541 -1.1598 11 6 1.5127 -4.6773 -1.3015 12 6 0.8497 -4.7825 -2.6976 13 1 -0.1938 -4.4697 -2.6599 14 6 0.9743 -6.2005 -3.2584 15 6 1.7008 -3.7813 -3.5228 16 1 1.1275 -3.3884 -4.3624 17 7 2.9358 -4.4145 -3.9919 18 6 3.5666 -3.9394 -5.1105 19 1 3.1540 -3.0976 -5.6468 20 6 4.7365 -4.5396 -5.5554 21 7 5.2397 -5.5652 -4.9015 22 14 5.6013 -3.8866 -7.0769 23 1 6.8224 -4.6910 -7.3358 24 1 4.6886 -3.9824 -8.2444 25 1 5.9804 -2.4672 -6.8600 26 6 2.0127 -2.6680 -2.5005 27 1 -0.3634 0.0026 1.0276 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5116 30 1 5.2851 -1.5007 -1.0379 31 1 5.7197 -0.7178 0.5003 32 1 4.8647 -2.2789 0.5066 33 1 0.8075 -4.9705 -0.5237 34 1 2.4056 -5.3007 -1.2577 35 1 2.0172 -6.5153 -3.2219 36 1 0.3679 -6.8818 -2.6616 37 1 0.6265 -6.2145 -4.2914 38 1 3.3066 -5.1702 -3.5100 39 1 6.0575 -5.9845 -5.2122 40 1 3.0322 -2.3096 -2.6422 41 1 1.3081 -1.8452 -2.6222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054371721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:08 Heat of formation + Delta-G solvation = 36.552619 kcal Electronic energy + Delta-G solvation = -24380.344306 eV Core-core repulsion = 20877.921564 eV Total energy + Delta-G solvation = -3502.422742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.81824 -39.80301 -37.64897 -34.56631 -33.99981 -33.53770 -32.32228 -30.55490 -28.86153 -28.18115 -27.76646 -26.39955 -24.16019 -23.66730 -22.01560 -20.36914 -19.38499 -19.18739 -17.87152 -17.65417 -17.14051 -16.28242 -15.79374 -15.25627 -14.71713 -14.47071 -13.93976 -13.67432 -13.55292 -13.42986 -13.16507 -13.13711 -13.00550 -12.78047 -12.59200 -12.45475 -12.16012 -12.01090 -11.60884 -11.20598 -11.09426 -10.98324 -10.83047 -10.53774 -10.34331 -10.09696 -9.97237 -9.86538 -9.71001 -9.30689 -9.07185 -8.37989 -7.13885 -5.89873 -3.20215 1.36194 1.92634 2.54603 2.85196 3.33430 3.35888 3.41450 3.42076 4.08089 4.26063 4.47522 4.65183 4.93742 5.03631 5.10999 5.19318 5.28497 5.34925 5.39742 5.44957 5.46797 5.50605 5.58009 5.64935 5.71141 5.84650 5.90547 5.91728 5.97063 6.11039 6.20904 6.27627 6.31894 6.46864 6.53222 6.68513 6.87998 7.57919 7.71107 8.23140 8.24985 8.28175 9.39985 9.93570 10.28814 11.31902 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.005304 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.010477 B = 5277.533145 C = 6252.563047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.053 3.947 3 N -0.359 5.359 4 O 0.093 5.907 5 C 0.023 3.977 6 C -0.081 4.081 7 C -0.242 4.242 8 C 0.611 3.389 9 O -0.541 6.541 10 N -0.594 5.594 11 C 0.114 3.886 12 C -0.115 4.115 13 H 0.079 0.921 14 C -0.129 4.129 15 C 0.173 3.827 16 H 0.074 0.926 17 N -0.710 5.710 18 C -0.248 4.248 19 H 0.071 0.929 20 C -0.006 4.006 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.073 3.927 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.387 0.613 39 H 0.257 0.743 40 H 0.076 0.924 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.396 6.469 7.831 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 N -0.067 5.067 4 O 0.032 5.968 5 C -0.040 4.040 6 C -0.138 4.138 7 C -0.249 4.249 8 C 0.397 3.603 9 O -0.419 6.419 10 N -0.326 5.326 11 C -0.007 4.007 12 C -0.135 4.135 13 H 0.097 0.903 14 C -0.187 4.187 15 C 0.060 3.940 16 H 0.092 0.908 17 N -0.351 5.351 18 C -0.379 4.379 19 H 0.089 0.911 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.053 4.053 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.222 0.778 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.539 7.562 8.274 13.508 hybrid contribution 0.651 -0.524 -0.717 1.102 sum -6.888 7.038 7.556 12.413 Atomic orbital electron populations 1.20189 0.85352 1.03999 1.03677 1.24677 0.98447 0.86627 1.01158 1.73567 0.89210 1.23418 1.20503 1.84505 1.21406 1.22695 1.68187 1.24629 0.97542 0.83494 0.98360 1.20507 0.88771 0.99185 1.05313 1.21826 0.92810 0.95185 1.15094 1.16458 0.77280 0.83756 0.82803 1.90791 1.52138 1.68317 1.30677 1.48368 1.66864 1.11527 1.05826 1.22331 0.99743 0.81240 0.97433 1.22662 0.98975 0.97732 0.94170 0.90304 1.21531 1.02901 0.93803 1.00496 1.21203 0.89100 0.90510 0.93153 0.90834 1.42414 1.24206 1.37414 1.31017 1.19181 1.04427 1.11915 1.02412 0.91099 1.24732 0.98248 0.98086 0.99218 1.69646 1.22751 1.24153 1.41055 0.86294 0.79050 0.78046 0.82914 1.21661 1.21180 1.21221 1.23315 1.01803 0.98345 0.81824 0.89795 0.90001 0.89937 0.88054 0.89251 0.88758 0.91041 0.90899 0.91143 0.93697 0.92068 0.77750 0.93285 0.90588 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.49 36.01 0.38 -0.44 16 2 C 0.05 0.77 7.59 -79.77 -0.61 0.16 16 3 N -0.36 -5.45 12.01 34.78 0.42 -5.03 16 4 O 0.09 1.36 11.06 18.65 0.21 1.56 16 5 C 0.02 0.33 7.55 -34.63 -0.26 0.07 16 6 C -0.08 -0.93 10.33 36.01 0.37 -0.56 16 7 C -0.24 -3.79 5.42 -102.89 -0.56 -4.35 16 8 C 0.61 10.51 7.63 -12.53 -0.10 10.42 16 9 O -0.54 -10.74 17.36 5.27 0.09 -10.65 16 10 N -0.59 -9.73 3.33 -171.80 -0.57 -10.30 16 11 C 0.11 1.79 6.33 -2.53 -0.02 1.77 16 12 C -0.12 -1.70 3.51 -88.47 -0.31 -2.01 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.13 -1.93 8.85 37.15 0.33 -1.60 16 15 C 0.17 3.02 3.39 -66.09 -0.22 2.79 16 16 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 17 N -0.71 -15.69 4.50 -51.65 -0.23 -15.92 16 18 C -0.25 -6.25 9.96 -15.06 -0.15 -6.40 16 19 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 21 N -0.93 -26.12 13.06 55.49 0.72 -25.39 16 22 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.07 1.21 6.21 -3.07 -0.02 1.19 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.15 8.11 -51.93 -0.42 0.72 16 33 H 0.07 1.06 8.04 -51.92 -0.42 0.64 16 34 H 0.07 1.23 7.98 -51.93 -0.41 0.82 16 35 H 0.07 1.23 6.48 -51.93 -0.34 0.89 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.39 9.20 6.31 -40.82 -0.26 8.95 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -30.10 347.43 -6.44 -36.55 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.04 Total: 7.09 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.26 Total: 0.79 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.34 Total: -56.64 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.30 Total: -9.08 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.10 -6.44 -36.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054371721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.100 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds