Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30016 * 127.33155 * 2 1 4 4 O 1.20659 * 112.30018 * 179.97438 * 3 2 1 5 5 C 1.33498 * 113.15632 * 359.72608 * 4 3 2 6 6 C 1.37364 * 106.33935 * 0.44531 * 5 4 3 7 7 C 1.47395 * 128.56025 * 179.85874 * 6 5 4 8 8 O 1.21610 * 119.99454 * 179.68009 * 7 6 5 9 9 N 1.34774 * 120.00576 * 359.95049 * 7 6 5 10 10 C 1.46493 * 120.00438 * 179.72430 * 9 7 6 11 11 C 1.53005 * 109.47419 * 175.12970 * 10 9 7 12 12 N 1.46504 * 110.01501 * 303.90516 * 11 10 9 13 13 C 1.36929 * 119.99734 * 301.46010 * 12 11 10 14 14 H 1.07997 * 120.00491 * 354.60790 * 13 12 11 15 15 C 1.38817 * 120.00020 * 174.60687 * 13 12 11 16 16 N 1.31622 * 119.99507 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46957 * 89.99939 * 17 15 13 19 19 H 1.48501 * 109.47176 * 210.00352 * 17 15 13 20 20 H 1.48496 * 109.46787 * 330.00097 * 17 15 13 21 21 C 1.54264 * 110.03103 * 182.46194 * 11 10 9 22 22 C 1.54895 * 104.19222 * 217.10351 * 21 11 10 23 23 C 1.54888 * 102.74723 * 37.94751 * 22 21 11 24 24 C 1.53872 * 110.02883 * 65.29502 * 11 10 9 25 25 H 1.09002 * 109.46642 * 270.03180 * 1 2 3 26 26 H 1.08996 * 109.47353 * 30.03587 * 1 2 3 27 27 H 1.09005 * 109.46967 * 150.03918 * 1 2 3 28 28 H 1.08000 * 126.83176 * 180.33285 * 5 4 3 29 29 H 0.97006 * 119.99505 * 359.72632 * 9 7 6 30 30 H 1.08999 * 109.47246 * 295.13274 * 10 9 7 31 31 H 1.09005 * 109.46948 * 55.13339 * 10 9 7 32 32 H 0.97002 * 119.99847 * 121.45974 * 12 11 10 33 33 H 0.97006 * 119.99632 * 180.02562 * 16 15 13 34 34 H 1.09003 * 110.48963 * 335.78303 * 21 11 10 35 35 H 1.08997 * 110.48395 * 98.43150 * 21 11 10 36 36 H 1.08999 * 110.75724 * 279.62715 * 22 21 11 37 37 H 1.08998 * 110.75293 * 156.26000 * 22 21 11 38 38 H 1.09003 * 110.48431 * 203.37646 * 23 22 21 39 39 H 1.08995 * 110.48764 * 80.73085 * 23 22 21 40 40 H 1.08999 * 110.02946 * 238.56932 * 24 11 10 41 41 H 1.08998 * 110.03429 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6007 0.0068 6 6 2.3992 -1.1696 0.0004 7 6 2.0402 -2.5992 0.0006 8 8 0.8707 -2.9323 0.0002 9 7 3.0081 -3.5371 0.0066 10 6 2.6513 -4.9579 0.0128 11 6 3.9212 -5.8032 -0.1035 12 7 4.6689 -5.4222 -1.3044 13 6 4.0778 -5.5123 -2.5362 14 1 3.0931 -5.9452 -2.6324 15 6 4.7442 -5.0470 -3.6616 16 7 5.9445 -4.5197 -3.5445 17 14 3.9381 -5.1704 -5.3422 18 1 3.1504 -3.9393 -5.6050 19 1 4.9859 -5.3195 -6.3840 20 1 3.0374 -6.3506 -5.3736 21 6 3.5557 -7.3009 -0.1603 22 6 4.6789 -7.9968 0.6480 23 6 4.9350 -6.9998 1.8054 24 6 4.7982 -5.6118 1.1463 25 1 -0.3633 0.0006 1.0277 26 1 -0.3634 0.8896 -0.5144 27 1 -0.3633 -0.8904 -0.5133 28 1 4.5967 -1.1194 0.0135 29 1 3.9410 -3.2712 0.0069 30 1 2.1380 -5.1995 0.9435 31 1 1.9943 -5.1712 -0.8304 32 1 5.5827 -5.1062 -1.2269 33 1 6.4100 -4.1942 -4.3309 34 1 2.5861 -7.4749 0.3062 35 1 3.5530 -7.6540 -1.1915 36 1 5.5742 -8.1196 0.0386 37 1 4.3384 -8.9576 1.0341 38 1 5.9388 -7.1333 2.2087 39 1 4.1881 -7.1252 2.5892 40 1 5.7803 -5.2363 0.8593 41 1 4.3188 -4.9170 1.8359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753667700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = 24.125643 kcal Electronic energy + Delta-G solvation = -24170.164995 eV Core-core repulsion = 20667.203379 eV Total energy + Delta-G solvation = -3502.961616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.80584 -39.43889 -38.12570 -34.43100 -34.14630 -33.42310 -32.00816 -30.61660 -28.75595 -28.32403 -27.83617 -25.21772 -23.81863 -22.99177 -21.19511 -20.61406 -19.81865 -18.83630 -17.92860 -17.62705 -17.02731 -16.39521 -15.76154 -15.37306 -14.73571 -14.56495 -14.40376 -14.08023 -13.43139 -13.38110 -13.27474 -13.04116 -12.82280 -12.70770 -12.36861 -12.01090 -11.50857 -11.27873 -11.14611 -10.82924 -10.78927 -10.69510 -10.56379 -10.30134 -10.19438 -9.92190 -9.85291 -9.73683 -9.70612 -9.64068 -8.97512 -8.53723 -7.07875 -5.87011 -3.16006 1.20655 1.87377 3.03663 3.38733 3.45176 3.46070 3.49327 3.62903 4.13588 4.39614 4.52018 4.97973 5.02319 5.04768 5.16842 5.25007 5.42171 5.49999 5.56697 5.61178 5.65026 5.72815 5.76449 5.87879 5.88786 6.03236 6.11441 6.18161 6.21306 6.24995 6.37546 6.49432 6.52535 6.71146 6.75891 6.90465 7.00958 7.65716 7.90879 8.25872 8.31678 8.55329 9.43975 9.96653 10.32049 11.34889 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.005869 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.310945 B = 4769.986276 C = 6084.810176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.066 3.934 3 N -0.366 5.366 4 O 0.092 5.908 5 C -0.003 4.003 6 C -0.247 4.247 7 C 0.590 3.410 8 O -0.545 6.545 9 N -0.690 5.690 10 C 0.121 3.879 11 C 0.188 3.812 12 N -0.711 5.711 13 C -0.234 4.234 14 H 0.070 0.930 15 C -0.007 4.007 16 N -0.931 5.931 17 Si 0.900 3.100 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.127 4.127 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.227 0.773 29 H 0.400 0.600 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 2.504 11.306 11.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 N -0.074 5.074 4 O 0.034 5.966 5 C -0.085 4.085 6 C -0.254 4.254 7 C 0.376 3.624 8 O -0.424 6.424 9 N -0.339 5.339 10 C -0.005 4.005 11 C 0.096 3.904 12 N -0.352 5.352 13 C -0.365 4.365 14 H 0.088 0.912 15 C -0.203 4.203 16 N -0.579 5.579 17 Si 0.731 3.269 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.172 4.172 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.165 4.165 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.115 0.885 28 H 0.243 0.757 29 H 0.235 0.765 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.219 0.781 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.017 3.548 11.135 12.358 hybrid contribution 0.437 -0.678 -1.174 1.425 sum -3.580 2.870 9.960 10.966 Atomic orbital electron populations 1.20241 0.85072 1.04317 1.03614 1.24842 0.98881 0.86520 0.99413 1.73636 0.89359 1.23732 1.20717 1.84540 1.21476 1.23236 1.67362 1.26492 1.00611 0.83758 0.97618 1.22468 0.92664 0.96004 1.14258 1.16784 0.85670 0.82962 0.77007 1.90738 1.18365 1.82010 1.51300 1.45544 1.09068 1.06519 1.72794 1.21945 0.98854 0.79135 1.00558 1.20476 0.90055 0.92252 0.87637 1.42547 1.13936 1.78282 1.00459 1.19077 1.00217 1.32872 0.84314 0.91240 1.24673 0.96752 1.01159 0.97757 1.69639 1.12954 1.46457 1.28856 0.86297 0.78217 0.77771 0.84575 1.21799 1.21832 1.20742 1.22820 0.96844 0.96342 1.01154 1.22387 0.99485 0.97086 0.96512 1.22300 1.00579 0.95295 0.97654 1.22442 1.00308 0.97145 0.96566 0.90007 0.90700 0.88535 0.75667 0.76483 0.92825 0.91174 0.78124 0.93546 0.92872 0.90238 0.91383 0.92696 0.92334 0.92259 0.91249 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.15 36.01 0.37 -0.59 16 2 C 0.07 1.00 7.58 -79.77 -0.60 0.40 16 3 N -0.37 -5.56 12.01 34.78 0.42 -5.15 16 4 O 0.09 1.28 11.06 18.64 0.21 1.48 16 5 C 0.00 -0.03 11.85 30.41 0.36 0.33 16 6 C -0.25 -3.82 6.47 -102.89 -0.67 -4.49 16 7 C 0.59 10.39 7.81 -12.53 -0.10 10.29 16 8 O -0.54 -10.97 15.69 5.27 0.08 -10.89 16 9 N -0.69 -11.43 5.10 -61.39 -0.31 -11.75 16 10 C 0.12 2.09 3.99 -4.04 -0.02 2.07 16 11 C 0.19 3.18 0.68 -130.70 -0.09 3.09 16 12 N -0.71 -15.06 4.76 -46.20 -0.22 -15.28 16 13 C -0.23 -5.81 8.39 -15.06 -0.13 -5.94 16 14 H 0.07 1.76 7.23 -52.49 -0.38 1.38 16 15 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 16 N -0.93 -25.84 13.06 55.49 0.73 -25.12 16 17 Si 0.90 21.80 29.55 -169.99 -5.02 16.78 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 C -0.13 -2.14 5.94 -25.07 -0.15 -2.29 16 22 C -0.12 -1.65 6.91 -24.74 -0.17 -1.82 16 23 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 24 C -0.13 -1.77 5.80 -25.61 -0.15 -1.92 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.35 7.11 -51.93 -0.37 0.98 16 28 H 0.23 2.06 7.68 -52.49 -0.40 1.65 16 29 H 0.40 6.11 7.18 -40.82 -0.29 5.81 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.41 7.49 -51.93 -0.39 1.03 16 32 H 0.38 8.70 7.28 -40.82 -0.30 8.41 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 35 H 0.08 1.50 7.12 -51.93 -0.37 1.13 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.00 7.44 -51.93 -0.39 0.61 16 41 H 0.06 0.78 7.55 -51.93 -0.39 0.39 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -29.93 339.68 -6.40 -36.33 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.78 Total: 11.31 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.61 Total: -2.84 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.61 Total: -57.29 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.29 Total: -9.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.93 -6.40 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.455 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds