Wall clock time and date at job start Tue Mar 31 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 C 1.50697 * 109.47587 * 239.99683 * 2 1 3 5 5 C 1.41265 * 126.70125 * 84.71016 * 4 2 1 6 6 C 1.36826 * 103.84635 * 179.86273 * 5 4 2 7 7 C 1.47508 * 126.94709 * 180.12891 * 6 5 4 8 8 O 1.21582 * 120.00029 * 6.71865 * 7 6 5 9 9 N 1.34780 * 120.00140 * 186.71975 * 7 6 5 10 10 C 1.46959 * 120.59048 * 6.45470 * 9 7 6 11 11 C 1.53817 * 108.39799 * 124.75908 * 10 9 7 12 12 N 1.46965 * 108.57976 * 49.63322 * 11 10 9 13 13 C 1.36933 * 120.59142 * 124.66974 * 12 11 10 14 14 H 1.08007 * 119.99800 * 223.69877 * 13 12 11 15 15 C 1.38812 * 120.00346 * 43.70383 * 13 12 11 16 16 N 1.31621 * 119.99882 * 10.21488 * 15 13 12 17 17 Si 1.86795 * 120.00347 * 190.21157 * 15 13 12 18 18 H 1.48503 * 109.46858 * 60.00001 * 17 15 13 19 19 H 1.48494 * 109.47342 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47197 * 300.00382 * 17 15 13 21 21 C 1.46962 * 118.81306 * 304.64906 * 12 11 10 22 22 C 1.46965 * 120.59418 * 186.73239 * 9 7 6 23 23 O 1.34647 * 106.11030 * 0.39823 * 6 5 4 24 24 N 1.20895 * 111.46591 * 359.72813 * 23 6 5 25 25 H 1.09003 * 109.47239 * 60.00496 * 1 2 3 26 26 H 1.08998 * 109.47464 * 300.00114 * 1 2 3 27 27 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47239 * 119.99504 * 2 1 3 29 29 H 1.09000 * 109.47476 * 60.00116 * 3 2 1 30 30 H 1.09005 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47186 * 299.99547 * 3 2 1 32 32 H 1.07998 * 128.08198 * 359.97438 * 5 4 2 33 33 H 1.09007 * 109.61166 * 244.53699 * 10 9 7 34 34 H 1.09000 * 109.61401 * 5.05342 * 10 9 7 35 35 H 1.09004 * 109.73913 * 289.84464 * 11 10 9 36 36 H 1.09001 * 109.53313 * 169.30025 * 11 10 9 37 37 H 0.97001 * 120.00282 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.61165 * 295.48245 * 21 12 11 39 39 H 1.08998 * 109.75083 * 175.05019 * 21 12 11 40 40 H 1.09001 * 109.61073 * 354.94808 * 22 9 7 41 41 H 1.08997 * 109.60921 * 115.45725 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.2154 -0.1492 -2.5137 6 6 2.6850 -1.1929 -3.2636 7 6 3.0494 -1.1646 -4.6927 8 8 3.0603 -0.1093 -5.2965 9 7 3.3701 -2.3085 -5.3292 10 6 3.2258 -3.6058 -4.6541 11 6 2.3327 -4.5082 -5.5224 12 7 2.8387 -4.4800 -6.9019 13 6 3.1647 -5.6422 -7.5485 14 1 4.0734 -5.7005 -8.1293 15 6 2.3271 -6.7454 -7.4577 16 7 1.1303 -6.6209 -6.9243 17 14 2.8983 -8.4067 -8.0926 18 1 4.1208 -8.8230 -7.3594 19 1 1.8273 -9.4130 -7.8798 20 1 3.2015 -8.3048 -9.5428 21 6 2.9884 -3.1822 -7.5750 22 6 3.8762 -2.2802 -6.7087 23 8 2.7416 -2.2527 -2.4349 24 7 2.3769 -1.9620 -1.3195 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 2.0300 0.8669 -2.8290 33 1 4.2065 -4.0658 -4.5321 34 1 2.7630 -3.4608 -3.6780 35 1 1.3067 -4.1404 -5.5015 36 1 2.3659 -5.5289 -5.1413 37 1 0.5451 -7.3919 -6.8605 38 1 2.0092 -2.7200 -7.7003 39 1 3.4531 -3.3247 -8.5506 40 1 3.8430 -1.2596 -7.0898 41 1 4.9021 -2.6479 -6.7296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408248564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:25 Heat of formation + Delta-G solvation = 54.007888 kcal Electronic energy + Delta-G solvation = -23960.296882 eV Core-core repulsion = 20458.631057 eV Total energy + Delta-G solvation = -3501.665825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.99733 -39.63842 -37.01937 -36.66663 -33.98081 -32.53275 -32.16868 -31.06935 -30.23406 -27.51195 -27.12894 -24.48598 -24.25747 -23.16412 -22.62280 -21.61514 -20.21754 -19.12584 -17.73711 -17.57879 -16.58442 -16.12564 -15.85967 -14.87155 -14.77001 -14.68420 -14.51608 -14.02818 -13.74332 -13.56889 -13.46056 -13.31066 -13.16548 -12.54011 -12.47749 -11.94201 -11.76745 -11.63634 -11.54977 -11.31329 -11.05265 -10.84893 -10.82033 -10.55908 -10.34172 -10.26437 -10.14370 -10.02590 -9.72880 -9.66361 -8.59544 -8.40848 -6.54256 -5.88978 -3.52727 0.88549 2.03310 2.69387 3.13426 3.32317 3.35089 3.38386 3.40140 3.84725 4.31131 4.40829 4.70027 4.79531 4.86698 4.96007 5.11479 5.26363 5.29069 5.32762 5.41088 5.52240 5.56671 5.67890 5.76892 5.79339 5.86391 5.89847 5.94606 5.96537 6.08622 6.14397 6.31889 6.37063 6.75591 6.84965 7.08460 7.28980 7.60127 7.74143 8.03816 8.25564 8.44301 9.09844 9.66494 10.33954 11.16626 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.003767 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.989373 B = 7431.304432 C = 8138.572869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.146 4.146 4 C 0.017 3.983 5 C -0.157 4.157 6 C -0.066 4.066 7 C 0.593 3.407 8 O -0.532 6.532 9 N -0.578 5.578 10 C 0.069 3.931 11 C 0.165 3.835 12 N -0.587 5.587 13 C -0.272 4.272 14 H 0.060 0.940 15 C 0.021 3.979 16 N -0.893 5.893 17 Si 0.904 3.096 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.132 3.868 22 C 0.095 3.905 23 O 0.119 5.881 24 N -0.352 5.352 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.179 0.821 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.083 0.917 37 H 0.257 0.743 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 12.765 11.964 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.180 4.180 6 C -0.132 4.132 7 C 0.378 3.622 8 O -0.411 6.411 9 N -0.308 5.308 10 C -0.055 4.055 11 C 0.039 3.961 12 N -0.309 5.309 13 C -0.402 4.402 14 H 0.078 0.922 15 C -0.181 4.181 16 N -0.534 5.534 17 Si 0.733 3.267 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.206 1.206 21 C 0.005 3.995 22 C -0.028 4.028 23 O 0.050 5.950 24 N -0.054 5.054 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.197 0.803 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.479 12.130 12.490 17.474 hybrid contribution 0.055 -0.358 -0.640 0.735 sum 1.534 11.772 11.850 16.774 Atomic orbital electron populations 1.21838 0.93269 1.02636 1.02521 1.19529 0.96238 0.95387 0.92370 1.21856 1.01523 0.94297 1.02665 1.23548 1.02793 0.90536 0.97226 1.22723 1.02444 1.01308 0.91520 1.24360 1.06404 0.87960 0.94485 1.16734 0.78544 0.84597 0.82357 1.90804 1.54909 1.30388 1.64974 1.48018 1.61478 1.06106 1.15235 1.23230 1.02466 0.83194 0.96646 1.21135 0.93137 0.97726 0.84140 1.43795 1.76850 1.01020 1.09283 1.18979 1.02599 0.89188 1.29419 0.92198 1.25507 0.94399 0.99717 0.98428 1.69971 1.06882 1.29841 1.46675 0.86381 0.77828 0.83394 0.79124 1.20630 1.21532 1.20570 1.21345 0.96278 0.87245 0.94663 1.22405 0.98362 1.01711 0.80366 1.85192 1.62433 1.33617 1.13792 1.73707 1.14248 1.16887 1.00599 0.92030 0.91531 0.92198 0.89296 0.91520 0.92192 0.91882 0.80347 0.90983 0.89527 0.95385 0.89822 0.93271 0.95695 0.91132 0.89631 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.02 -0.15 3.38 -91.77 -0.31 -0.46 16 3 C -0.15 -1.06 8.81 37.16 0.33 -0.73 16 4 C 0.02 0.22 6.20 -82.17 -0.51 -0.29 16 5 C -0.16 -2.09 10.14 -38.94 -0.39 -2.49 16 6 C -0.07 -1.04 6.92 -36.32 -0.25 -1.29 16 7 C 0.59 10.50 7.68 -12.48 -0.10 10.41 16 8 O -0.53 -10.29 16.34 5.29 0.09 -10.20 16 9 N -0.58 -10.48 2.94 -173.45 -0.51 -10.99 16 10 C 0.07 1.26 6.38 -3.37 -0.02 1.24 16 11 C 0.17 3.74 5.48 -3.36 -0.02 3.72 16 12 N -0.59 -14.16 2.87 -171.76 -0.49 -14.65 16 13 C -0.27 -7.16 9.41 -15.06 -0.14 -7.30 16 14 H 0.06 1.55 7.85 -52.48 -0.41 1.14 16 15 C 0.02 0.56 5.02 -17.43 -0.09 0.48 16 16 N -0.89 -25.18 11.98 55.49 0.66 -24.51 16 17 Si 0.90 20.85 29.57 -169.99 -5.03 15.83 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.13 2.72 6.67 -3.60 -0.02 2.69 16 22 C 0.09 1.68 6.60 -3.60 -0.02 1.66 16 23 O 0.12 1.88 7.89 15.53 0.12 2.00 16 24 N -0.35 -5.29 12.04 33.52 0.40 -4.89 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.44 7.49 -51.93 -0.39 0.06 16 32 H 0.18 2.02 7.66 -52.49 -0.40 1.61 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.48 4.15 -53.10 -0.22 1.26 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 2.05 6.98 -51.93 -0.36 1.69 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.39 7.94 -51.93 -0.41 0.97 16 40 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -30.01 335.59 -6.83 -36.83 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.92 Total: -1.24 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.21 Total: 6.77 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.07 Total: -55.05 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.21 Total: -8.20 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.01 -6.83 -36.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408248564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.843 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds