Wall clock time and date at job start Tue Mar 31 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 C 1.50697 * 109.47587 * 239.99683 * 2 1 3 5 5 C 1.41265 * 126.70125 * 84.71016 * 4 2 1 6 6 C 1.36826 * 103.84635 * 179.86273 * 5 4 2 7 7 C 1.47508 * 126.94709 * 180.12891 * 6 5 4 8 8 O 1.21582 * 120.00029 * 6.71865 * 7 6 5 9 9 N 1.34780 * 120.00140 * 186.71975 * 7 6 5 10 10 C 1.46959 * 120.59048 * 6.45470 * 9 7 6 11 11 C 1.53817 * 108.39799 * 124.75908 * 10 9 7 12 12 N 1.46965 * 108.57976 * 49.63322 * 11 10 9 13 13 C 1.36933 * 120.59142 * 124.66974 * 12 11 10 14 14 H 1.08007 * 119.99800 * 223.69877 * 13 12 11 15 15 C 1.38812 * 120.00346 * 43.70383 * 13 12 11 16 16 N 1.31621 * 119.99882 * 10.21488 * 15 13 12 17 17 Si 1.86795 * 120.00347 * 190.21157 * 15 13 12 18 18 H 1.48503 * 109.46858 * 60.00001 * 17 15 13 19 19 H 1.48494 * 109.47342 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47197 * 300.00382 * 17 15 13 21 21 C 1.46962 * 118.81306 * 304.64906 * 12 11 10 22 22 C 1.46965 * 120.59418 * 186.73239 * 9 7 6 23 23 O 1.34647 * 106.11030 * 0.39823 * 6 5 4 24 24 N 1.20895 * 111.46591 * 359.72813 * 23 6 5 25 25 H 1.09003 * 109.47239 * 60.00496 * 1 2 3 26 26 H 1.08998 * 109.47464 * 300.00114 * 1 2 3 27 27 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47239 * 119.99504 * 2 1 3 29 29 H 1.09000 * 109.47476 * 60.00116 * 3 2 1 30 30 H 1.09005 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47186 * 299.99547 * 3 2 1 32 32 H 1.07998 * 128.08198 * 359.97438 * 5 4 2 33 33 H 1.09007 * 109.61166 * 244.53699 * 10 9 7 34 34 H 1.09000 * 109.61401 * 5.05342 * 10 9 7 35 35 H 1.09004 * 109.73913 * 289.84464 * 11 10 9 36 36 H 1.09001 * 109.53313 * 169.30025 * 11 10 9 37 37 H 0.97001 * 120.00282 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.61165 * 295.48245 * 21 12 11 39 39 H 1.08998 * 109.75083 * 175.05019 * 21 12 11 40 40 H 1.09001 * 109.61073 * 354.94808 * 22 9 7 41 41 H 1.08997 * 109.60921 * 115.45725 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.2154 -0.1492 -2.5137 6 6 2.6850 -1.1929 -3.2636 7 6 3.0494 -1.1646 -4.6927 8 8 3.0603 -0.1093 -5.2965 9 7 3.3701 -2.3085 -5.3292 10 6 3.2258 -3.6058 -4.6541 11 6 2.3327 -4.5082 -5.5224 12 7 2.8387 -4.4800 -6.9019 13 6 3.1647 -5.6422 -7.5485 14 1 4.0734 -5.7005 -8.1293 15 6 2.3271 -6.7454 -7.4577 16 7 1.1303 -6.6209 -6.9243 17 14 2.8983 -8.4067 -8.0926 18 1 4.1208 -8.8230 -7.3594 19 1 1.8273 -9.4130 -7.8798 20 1 3.2015 -8.3048 -9.5428 21 6 2.9884 -3.1822 -7.5750 22 6 3.8762 -2.2802 -6.7087 23 8 2.7416 -2.2527 -2.4349 24 7 2.3769 -1.9620 -1.3195 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 2.0300 0.8669 -2.8290 33 1 4.2065 -4.0658 -4.5321 34 1 2.7630 -3.4608 -3.6780 35 1 1.3067 -4.1404 -5.5015 36 1 2.3659 -5.5289 -5.1413 37 1 0.5451 -7.3919 -6.8605 38 1 2.0092 -2.7200 -7.7003 39 1 3.4531 -3.3247 -8.5506 40 1 3.8430 -1.2596 -7.0898 41 1 4.9021 -2.6479 -6.7296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408248564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:25 Heat of formation + Delta-G solvation = 36.383537 kcal Electronic energy + Delta-G solvation = -23961.061131 eV Core-core repulsion = 20458.631057 eV Total energy + Delta-G solvation = -3502.430074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.11957 -41.10570 -38.57817 -37.58779 -35.70498 -33.69119 -33.46877 -32.71680 -31.82786 -28.89233 -28.07724 -26.11260 -25.29945 -24.71798 -24.13981 -22.76988 -21.64632 -20.44059 -19.08139 -18.88775 -18.06496 -17.54632 -17.30862 -16.66071 -16.28518 -15.72586 -15.50380 -15.34356 -15.27111 -15.19088 -14.86990 -14.56358 -14.17155 -14.13153 -13.35004 -13.16293 -13.04300 -12.81494 -12.67027 -12.58795 -12.49826 -12.28159 -12.27050 -12.08415 -12.03292 -11.79962 -11.70775 -11.35922 -11.14197 -10.86061 -10.59856 -9.95889 -8.50479 -7.89523 -5.58746 -0.33495 0.98728 1.42381 1.49311 1.50703 1.57536 1.78114 2.02408 2.49331 2.91122 3.16760 3.25264 3.56616 3.71244 3.88990 4.07085 4.11132 4.16166 4.20465 4.26094 4.36604 4.46570 4.54851 4.59848 4.73074 4.79146 4.82689 4.86990 4.93413 4.96204 5.05253 5.14369 5.17171 5.31728 5.36650 5.39849 5.44414 5.65460 6.14830 6.43335 6.69531 7.03097 7.11577 7.71558 8.35757 9.12592 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.003767 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.989373 B = 7431.304432 C = 8138.572869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.018 4.018 3 C -0.143 4.143 4 C 0.027 3.973 5 C -0.140 4.140 6 C -0.090 4.090 7 C 0.598 3.402 8 O -0.549 6.549 9 N -0.585 5.585 10 C 0.088 3.912 11 C 0.174 3.826 12 N -0.604 5.604 13 C -0.279 4.279 14 H 0.065 0.935 15 C -0.031 4.031 16 N -0.928 5.928 17 Si 0.969 3.031 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.273 1.273 21 C 0.131 3.869 22 C 0.105 3.895 23 O 0.101 5.899 24 N -0.369 5.369 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.000 1.000 36 H 0.058 0.942 37 H 0.253 0.747 38 H 0.008 0.992 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 14.179 13.045 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 C -0.201 4.201 4 C -0.131 4.131 5 C -0.162 4.162 6 C -0.155 4.155 7 C 0.384 3.616 8 O -0.428 6.428 9 N -0.316 5.316 10 C -0.036 4.036 11 C 0.047 3.953 12 N -0.328 5.328 13 C -0.409 4.409 14 H 0.083 0.917 15 C -0.228 4.228 16 N -0.571 5.571 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.221 1.221 20 H -0.199 1.199 21 C 0.005 3.995 22 C -0.018 4.018 23 O 0.035 5.965 24 N -0.075 5.075 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.218 0.782 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.299 13.561 13.552 19.309 hybrid contribution -0.241 -0.693 -0.922 1.178 sum 2.058 12.868 12.630 18.148 Atomic orbital electron populations 1.21845 0.92401 1.02040 1.03792 1.19764 0.96846 0.96325 0.90756 1.21867 1.01316 0.92860 1.04016 1.24173 1.00980 0.89738 0.98226 1.23083 1.00268 1.01633 0.91217 1.24153 1.08467 0.89019 0.93904 1.16853 0.77631 0.84024 0.83064 1.90787 1.55548 1.30755 1.65759 1.48041 1.61926 1.06138 1.15466 1.22910 1.01919 0.82610 0.96149 1.20901 0.92667 0.97166 0.84565 1.44050 1.76948 1.01760 1.10062 1.19320 1.02593 0.90092 1.28945 0.91744 1.26253 0.94445 1.03123 0.99023 1.70125 1.08100 1.30418 1.48431 0.85345 0.77219 0.79066 0.78741 1.19804 1.22142 1.19882 1.21412 0.96186 0.86194 0.95680 1.22269 0.98158 1.01557 0.79771 1.85121 1.63388 1.33911 1.14092 1.73712 1.15272 1.18245 1.00279 0.92033 0.89044 0.93728 0.88852 0.89327 0.92538 0.91466 0.78194 0.90002 0.88169 0.98233 0.92318 0.93795 0.97409 0.90272 0.88393 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.18 71.98 0.66 -1.36 16 2 C -0.02 -0.28 3.38 -11.54 -0.04 -0.32 16 3 C -0.14 -1.62 8.81 71.98 0.63 -0.99 16 4 C 0.03 0.65 6.20 43.56 0.27 0.92 16 5 C -0.14 -3.46 10.14 22.68 0.23 -3.23 16 6 C -0.09 -2.75 6.92 24.38 0.17 -2.58 16 7 C 0.60 20.66 7.68 86.69 0.67 21.33 16 8 O -0.55 -20.53 16.34 -3.97 -0.06 -20.60 16 9 N -0.59 -20.89 2.94 -820.94 -2.41 -23.31 16 10 C 0.09 3.24 6.38 86.57 0.55 3.79 16 11 C 0.17 8.10 5.48 86.57 0.47 8.58 16 12 N -0.60 -29.60 2.87 -697.33 -2.00 -31.60 16 13 C -0.28 -14.79 9.41 84.03 0.79 -14.00 16 14 H 0.07 3.30 7.85 -2.91 -0.02 3.28 16 15 C -0.03 -1.65 5.02 84.86 0.43 -1.22 16 16 N -0.93 -53.81 11.98 21.65 0.26 -53.55 16 17 Si 0.97 43.19 29.57 68.60 2.03 45.22 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 C 0.13 5.44 6.67 86.42 0.58 6.01 16 22 C 0.11 3.64 6.60 86.42 0.57 4.21 16 23 O 0.10 3.15 7.89 65.76 0.52 3.67 16 24 N -0.37 -10.79 12.04 -48.86 -0.59 -11.38 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.72 7.49 -2.39 -0.02 0.70 16 32 H 0.20 3.96 7.66 -2.91 -0.02 3.94 16 33 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 34 H 0.10 3.45 4.15 -20.93 -0.09 3.37 16 35 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 36 H 0.06 3.00 6.98 -2.39 -0.02 2.98 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.08 3.08 7.94 -2.39 -0.02 3.06 16 40 H 0.10 3.16 6.99 -2.39 -0.02 3.15 16 41 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -64.87 335.59 4.67 -60.20 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.95 Total: 10.22 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 5.98 Total: 21.13 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -4.74 Total: -119.83 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.45 Total: -16.93 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.87 4.67 -60.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408248564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.584 kcal (2) G-P(sol) polarization free energy of solvation -64.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds