Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37659 * 119.99830 * 2 1 4 4 C 1.40188 * 119.81222 * 174.32621 * 3 2 1 5 5 C 1.35800 * 120.18942 * 179.97438 * 4 3 2 6 6 C 1.41745 * 119.80521 * 359.97438 * 5 4 3 7 7 C 1.39522 * 120.18279 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00192 * 143.08079 * 7 6 5 9 9 C 1.46595 * 119.99756 * 323.07402 * 7 6 5 10 10 N 1.29493 * 119.99665 * 343.55585 * 9 7 6 11 11 Si 1.86798 * 119.99788 * 163.55982 * 9 7 6 12 12 H 1.48499 * 109.46995 * 269.99674 * 11 9 7 13 13 H 1.48497 * 109.47090 * 29.99713 * 11 9 7 14 14 H 1.48506 * 109.46817 * 149.99797 * 11 9 7 15 15 C 1.41718 * 119.63414 * 0.24558 * 6 5 4 16 16 N 1.48010 * 120.09940 * 179.75108 * 15 6 5 17 17 O 1.31704 * 119.99974 * 181.51844 * 16 15 6 18 18 O 1.31702 * 119.99909 * 1.52335 * 16 15 6 19 19 C 1.35830 * 119.80242 * 359.50866 * 15 6 5 20 20 C 1.46496 * 120.00374 * 179.97438 * 2 1 3 21 21 C 1.52992 * 109.47481 * 124.15489 * 20 2 1 22 22 C 1.53003 * 109.47027 * 244.15900 * 20 2 1 23 23 C 1.53001 * 109.46662 * 4.15018 * 20 2 1 24 24 N 1.46898 * 109.47233 * 60.00712 * 23 20 2 25 25 H 1.09005 * 109.46759 * 90.00166 * 1 2 3 26 26 H 1.08996 * 109.47079 * 210.00199 * 1 2 3 27 27 H 1.09003 * 109.47154 * 330.00554 * 1 2 3 28 28 H 1.07999 * 119.89868 * 359.97399 * 4 3 2 29 29 H 1.08000 * 120.09181 * 179.97438 * 5 4 3 30 30 H 0.96997 * 120.00321 * 354.29078 * 10 9 7 31 31 H 1.07995 * 119.90810 * 180.20505 * 19 15 6 32 32 H 1.08997 * 109.47242 * 64.94118 * 21 20 2 33 33 H 1.09004 * 109.47220 * 184.94714 * 21 20 2 34 34 H 1.09004 * 109.46918 * 304.94238 * 21 20 2 35 35 H 1.08994 * 109.47444 * 69.30775 * 22 20 2 36 36 H 1.08998 * 109.46985 * 189.31245 * 22 20 2 37 37 H 1.09000 * 109.47011 * 309.30555 * 22 20 2 38 38 H 1.09002 * 109.47236 * 180.02562 * 23 20 2 39 39 H 1.08996 * 109.47677 * 299.99874 * 23 20 2 40 40 H 1.00901 * 111.00270 * 56.03491 * 24 23 20 41 41 H 1.00893 * 111.00567 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1532 1.1922 0.0000 4 6 3.5500 1.1906 0.1203 5 6 4.2367 2.3622 0.1206 6 6 3.5371 3.5889 -0.0016 7 6 4.2347 4.7972 -0.0016 8 1 3.9089 5.6089 -0.6352 9 6 5.4098 4.9651 0.8586 10 7 5.6193 4.1423 1.8363 11 14 6.6048 6.3660 0.5442 12 1 7.6640 5.9123 -0.3924 13 1 5.8757 7.5142 -0.0517 14 1 7.2246 6.7851 1.8270 15 6 2.1247 3.5816 -0.1180 16 7 1.3834 4.8568 -0.2406 17 8 0.0687 4.8493 -0.3186 18 8 2.0385 5.9989 -0.2719 19 6 1.4538 2.4006 -0.1217 20 6 2.1976 -1.2686 0.0006 21 6 3.1539 -1.3059 -1.1930 22 6 2.9971 -1.3953 1.2989 23 6 1.2066 -2.4297 -0.1033 24 7 0.4389 -2.3082 -1.3498 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 4.0813 0.2549 0.2129 29 1 5.3126 2.3592 0.2138 30 1 4.9579 3.4663 2.0515 31 1 0.3778 2.3928 -0.2136 32 1 3.9135 -0.5333 -1.0743 33 1 3.6343 -2.2831 -1.2434 34 1 2.5952 -1.1280 -2.1119 35 1 2.3122 -1.5349 2.1352 36 1 3.6671 -2.2524 1.2309 37 1 3.5817 -0.4888 1.4555 38 1 1.7515 -3.3737 -0.1024 39 1 0.5253 -2.4032 0.7471 40 1 1.0524 -2.2654 -2.1497 41 1 -0.2234 -3.0638 -1.4418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170059708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = 61.147453 kcal Electronic energy + Delta-G solvation = -24545.432292 eV Core-core repulsion = 21044.076062 eV Total energy + Delta-G solvation = -3501.356230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.87422 -37.93657 -36.18907 -34.84117 -33.17196 -32.47175 -32.27424 -30.30750 -29.28179 -27.37666 -26.36115 -25.33862 -24.87215 -23.57074 -21.15730 -20.94707 -18.87058 -18.74367 -16.89652 -16.40926 -16.07342 -15.61117 -15.36961 -14.79810 -14.60941 -14.35128 -14.11503 -13.74036 -13.59430 -13.37107 -13.00789 -12.85969 -12.69628 -12.37195 -12.21647 -12.04222 -11.59791 -11.46055 -11.34726 -11.11031 -11.00163 -10.76159 -10.61558 -10.22199 -10.07282 -9.72767 -9.28305 -9.13157 -8.93299 -8.88972 -8.71740 -8.39096 -7.88969 -6.82703 -4.77608 1.01579 2.43313 2.76023 2.92046 3.03863 3.18436 3.24274 3.60067 3.70675 4.02166 4.40977 4.65872 4.79636 4.97312 5.13079 5.29067 5.45682 5.51062 5.60983 5.63355 5.75390 5.84098 5.85072 5.89433 6.09550 6.21057 6.25691 6.36587 6.39143 6.43808 6.60495 6.67717 6.86720 6.92605 7.03051 7.19694 7.24154 7.29121 7.37415 7.78252 7.99570 8.04501 8.17435 8.39871 8.95328 9.25365 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.005286 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.392617 B = 5295.546412 C = 6438.091821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.611 5.611 3 C 0.124 3.876 4 C -0.134 4.134 5 C -0.135 4.135 6 C 0.046 3.954 7 C -0.371 4.371 8 H 0.129 0.871 9 C 0.020 3.980 10 N -0.725 5.725 11 Si 1.083 2.917 12 H -0.266 1.266 13 H -0.260 1.260 14 H -0.268 1.268 15 C -0.060 4.060 16 N 0.038 4.962 17 O -0.374 6.374 18 O -0.296 6.296 19 C -0.125 4.125 20 C 0.189 3.811 21 C -0.178 4.178 22 C -0.179 4.179 23 C 0.063 3.937 24 N -0.843 5.843 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.131 0.869 29 H 0.120 0.880 30 H 0.309 0.691 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.342 0.658 41 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 -14.856 -1.406 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.326 5.326 3 C 0.023 3.977 4 C -0.155 4.155 5 C -0.155 4.155 6 C 0.041 3.959 7 C -0.400 4.400 8 H 0.146 0.854 9 C -0.210 4.210 10 N -0.346 5.346 11 Si 0.902 3.098 12 H -0.191 1.191 13 H -0.184 1.184 14 H -0.193 1.193 15 C -0.165 4.165 16 N 0.447 4.553 17 O -0.510 6.510 18 O -0.450 6.450 19 C -0.150 4.150 20 C 0.102 3.898 21 C -0.236 4.236 22 C -0.237 4.237 23 C -0.068 4.068 24 N -0.373 5.373 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.156 0.844 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.284 -13.892 -0.550 14.286 hybrid contribution -1.389 -1.530 -0.715 2.186 sum 1.895 -15.422 -1.265 15.589 Atomic orbital electron populations 1.21431 0.79966 1.00250 1.01045 1.45324 1.04085 1.01081 1.82139 1.16992 0.90333 0.84820 1.05534 1.20986 0.92645 0.98342 1.03491 1.20985 0.98799 0.91067 1.04625 1.17272 0.88934 0.94035 0.95690 1.23314 1.03673 0.99996 1.13049 0.85383 1.29381 0.98040 1.01310 0.92291 1.69964 1.34799 1.09978 1.19862 0.83382 0.74464 0.73853 0.78090 1.19144 1.18350 1.19263 1.19354 0.90130 0.81053 1.25917 1.49540 1.01672 1.03199 1.00868 1.96046 0.90851 1.96175 1.67965 1.96001 1.68515 1.17962 1.62540 1.19512 0.99382 0.89353 1.06783 1.20070 0.91130 0.84087 0.94503 1.22581 1.00396 1.02021 0.98606 1.22572 1.00698 1.03032 0.97415 1.22018 0.95474 0.95591 0.93676 1.58811 1.21823 1.52291 1.04423 0.93240 0.92588 0.93273 0.85207 0.86218 0.87546 0.86047 0.90247 0.92753 0.91894 0.92456 0.92348 0.90016 0.94793 0.90451 0.84399 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.75 8.38 59.85 0.50 2.26 16 2 N -0.61 -9.65 2.87 -164.50 -0.47 -10.12 16 3 C 0.12 2.43 6.14 -83.80 -0.51 1.91 16 4 C -0.13 -2.49 6.62 -39.72 -0.26 -2.76 16 5 C -0.13 -2.83 7.85 -39.12 -0.31 -3.14 16 6 C 0.05 1.14 5.18 -106.75 -0.55 0.59 16 7 C -0.37 -9.17 7.83 -35.73 -0.28 -9.45 16 8 H 0.13 3.37 5.81 -52.49 -0.30 3.06 16 9 C 0.02 0.45 5.25 -15.17 -0.08 0.37 16 10 N -0.72 -16.14 12.64 55.99 0.71 -15.44 16 11 Si 1.08 18.85 30.06 -169.99 -5.11 13.74 16 12 H -0.27 -4.29 7.11 56.52 0.40 -3.89 16 13 H -0.26 -4.56 7.11 56.52 0.40 -4.15 16 14 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 15 C -0.06 -1.58 6.90 -79.49 -0.55 -2.13 16 16 N 0.04 1.11 4.98 34.19 0.17 1.28 16 17 O -0.37 -11.36 19.12 -31.57 -0.60 -11.97 16 18 O -0.30 -8.93 16.21 -31.57 -0.51 -9.45 16 19 C -0.12 -2.91 8.61 -39.73 -0.34 -3.26 16 20 C 0.19 2.32 0.81 -131.82 -0.11 2.22 16 21 C -0.18 -2.11 7.71 37.15 0.29 -1.82 16 22 C -0.18 -2.12 8.28 37.16 0.31 -1.81 16 23 C 0.06 0.62 5.01 -3.82 -0.02 0.60 16 24 N -0.84 -7.86 7.53 -10.37 -0.08 -7.94 16 25 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 26 H 0.06 0.72 5.71 -51.93 -0.30 0.43 16 27 H 0.05 0.82 6.39 -51.93 -0.33 0.49 16 28 H 0.13 2.02 3.36 -52.49 -0.18 1.85 16 29 H 0.12 2.40 7.08 -52.49 -0.37 2.03 16 30 H 0.31 7.04 6.60 -40.82 -0.27 6.77 16 31 H 0.12 2.86 5.73 -52.49 -0.30 2.56 16 32 H 0.08 1.06 4.68 -51.93 -0.24 0.82 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.78 6.83 -51.93 -0.35 0.43 16 35 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.08 1.13 4.77 -51.93 -0.25 0.88 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.78 6.71 -51.93 -0.35 0.43 16 40 H 0.34 3.14 7.15 -39.29 -0.28 2.86 16 41 H 0.34 2.43 9.08 -39.30 -0.36 2.07 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -30.55 319.38 -7.77 -38.32 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -4.76 Total: 13.17 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.92 Total: -16.42 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.33 Total: -32.22 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -1.12 Total: -21.41 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.11 Total: 13.74 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.55 -7.77 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170059708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.468 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds