Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37659 * 119.99830 * 2 1 4 4 C 1.40188 * 119.81222 * 174.32621 * 3 2 1 5 5 C 1.35800 * 120.18942 * 179.97438 * 4 3 2 6 6 C 1.41745 * 119.80521 * 359.97438 * 5 4 3 7 7 C 1.39522 * 120.18279 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00192 * 143.08079 * 7 6 5 9 9 C 1.46595 * 119.99756 * 323.07402 * 7 6 5 10 10 N 1.29493 * 119.99665 * 343.55585 * 9 7 6 11 11 Si 1.86798 * 119.99788 * 163.55982 * 9 7 6 12 12 H 1.48499 * 109.46995 * 269.99674 * 11 9 7 13 13 H 1.48497 * 109.47090 * 29.99713 * 11 9 7 14 14 H 1.48506 * 109.46817 * 149.99797 * 11 9 7 15 15 C 1.41718 * 119.63414 * 0.24558 * 6 5 4 16 16 N 1.48010 * 120.09940 * 179.75108 * 15 6 5 17 17 O 1.31704 * 119.99974 * 181.51844 * 16 15 6 18 18 O 1.31702 * 119.99909 * 1.52335 * 16 15 6 19 19 C 1.35830 * 119.80242 * 359.50866 * 15 6 5 20 20 C 1.46496 * 120.00374 * 179.97438 * 2 1 3 21 21 C 1.52992 * 109.47481 * 124.15489 * 20 2 1 22 22 C 1.53003 * 109.47027 * 244.15900 * 20 2 1 23 23 C 1.53001 * 109.46662 * 4.15018 * 20 2 1 24 24 N 1.46898 * 109.47233 * 60.00712 * 23 20 2 25 25 H 1.09005 * 109.46759 * 90.00166 * 1 2 3 26 26 H 1.08996 * 109.47079 * 210.00199 * 1 2 3 27 27 H 1.09003 * 109.47154 * 330.00554 * 1 2 3 28 28 H 1.07999 * 119.89868 * 359.97399 * 4 3 2 29 29 H 1.08000 * 120.09181 * 179.97438 * 5 4 3 30 30 H 0.96997 * 120.00321 * 354.29078 * 10 9 7 31 31 H 1.07995 * 119.90810 * 180.20505 * 19 15 6 32 32 H 1.08997 * 109.47242 * 64.94118 * 21 20 2 33 33 H 1.09004 * 109.47220 * 184.94714 * 21 20 2 34 34 H 1.09004 * 109.46918 * 304.94238 * 21 20 2 35 35 H 1.08994 * 109.47444 * 69.30775 * 22 20 2 36 36 H 1.08998 * 109.46985 * 189.31245 * 22 20 2 37 37 H 1.09000 * 109.47011 * 309.30555 * 22 20 2 38 38 H 1.09002 * 109.47236 * 180.02562 * 23 20 2 39 39 H 1.08996 * 109.47677 * 299.99874 * 23 20 2 40 40 H 1.00901 * 111.00270 * 56.03491 * 24 23 20 41 41 H 1.00893 * 111.00567 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1532 1.1922 0.0000 4 6 3.5500 1.1906 0.1203 5 6 4.2367 2.3622 0.1206 6 6 3.5371 3.5889 -0.0016 7 6 4.2347 4.7972 -0.0016 8 1 3.9089 5.6089 -0.6352 9 6 5.4098 4.9651 0.8586 10 7 5.6193 4.1423 1.8363 11 14 6.6048 6.3660 0.5442 12 1 7.6640 5.9123 -0.3924 13 1 5.8757 7.5142 -0.0517 14 1 7.2246 6.7851 1.8270 15 6 2.1247 3.5816 -0.1180 16 7 1.3834 4.8568 -0.2406 17 8 0.0687 4.8493 -0.3186 18 8 2.0385 5.9989 -0.2719 19 6 1.4538 2.4006 -0.1217 20 6 2.1976 -1.2686 0.0006 21 6 3.1539 -1.3059 -1.1930 22 6 2.9971 -1.3953 1.2989 23 6 1.2066 -2.4297 -0.1033 24 7 0.4389 -2.3082 -1.3498 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 4.0813 0.2549 0.2129 29 1 5.3126 2.3592 0.2138 30 1 4.9579 3.4663 2.0515 31 1 0.3778 2.3928 -0.2136 32 1 3.9135 -0.5333 -1.0743 33 1 3.6343 -2.2831 -1.2434 34 1 2.5952 -1.1280 -2.1119 35 1 2.3122 -1.5349 2.1352 36 1 3.6671 -2.2524 1.2309 37 1 3.5817 -0.4888 1.4555 38 1 1.7515 -3.3737 -0.1024 39 1 0.5253 -2.4032 0.7471 40 1 1.0524 -2.2654 -2.1497 41 1 -0.2234 -3.0638 -1.4418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170059708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = 39.680701 kcal Electronic energy + Delta-G solvation = -24546.363160 eV Core-core repulsion = 21044.076062 eV Total energy + Delta-G solvation = -3502.287098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35792 -39.51029 -37.88663 -36.52395 -34.62468 -34.15978 -33.56897 -31.91191 -31.05840 -28.43079 -27.94019 -27.03926 -25.91576 -25.19449 -22.77382 -22.69043 -20.61970 -20.17949 -18.29199 -17.99705 -17.57192 -17.04623 -16.59919 -16.44735 -16.13308 -15.76913 -15.57015 -15.21370 -14.97515 -14.85241 -14.53085 -14.12003 -14.04161 -13.47662 -13.38376 -13.32484 -13.04951 -12.85512 -12.74238 -12.40299 -12.31262 -12.05986 -11.96165 -11.84891 -11.39005 -11.33391 -11.17994 -11.03810 -10.89916 -10.62212 -10.22385 -9.85639 -9.48008 -8.47462 -6.76521 -1.03006 0.65802 0.91510 1.44869 1.53451 1.55649 1.83928 2.08829 2.28326 2.31960 2.93440 3.63262 3.76010 3.85411 4.02957 4.07562 4.20831 4.23524 4.42939 4.51857 4.59235 4.64988 4.73567 4.74461 4.79226 4.87010 4.90657 4.93099 5.00886 5.05957 5.12041 5.17052 5.24600 5.36315 5.40402 5.44139 5.63620 5.86189 5.96489 6.25325 6.30035 6.55085 6.64253 6.75234 7.10631 7.24411 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.005286 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.392617 B = 5295.546412 C = 6438.091821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.595 5.595 3 C 0.195 3.805 4 C -0.128 4.128 5 C -0.107 4.107 6 C -0.010 4.010 7 C -0.301 4.301 8 H 0.109 0.891 9 C -0.007 4.007 10 N -0.689 5.689 11 Si 1.124 2.876 12 H -0.230 1.230 13 H -0.273 1.273 14 H -0.251 1.251 15 C -0.026 4.026 16 N 0.016 4.984 17 O -0.501 6.501 18 O -0.419 6.419 19 C -0.211 4.211 20 C 0.173 3.827 21 C -0.177 4.177 22 C -0.178 4.178 23 C 0.068 3.932 24 N -0.857 5.857 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.025 0.975 28 H 0.180 0.820 29 H 0.146 0.854 30 H 0.308 0.692 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.344 0.656 41 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -20.318 -0.427 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.307 5.307 3 C 0.087 3.913 4 C -0.147 4.147 5 C -0.127 4.127 6 C -0.015 4.015 7 C -0.333 4.333 8 H 0.127 0.873 9 C -0.236 4.236 10 N -0.309 5.309 11 Si 0.936 3.064 12 H -0.153 1.153 13 H -0.198 1.198 14 H -0.175 1.175 15 C -0.141 4.141 16 N 0.376 4.624 17 O -0.605 6.605 18 O -0.538 6.538 19 C -0.239 4.239 20 C 0.088 3.912 21 C -0.235 4.235 22 C -0.236 4.236 23 C -0.063 4.063 24 N -0.390 5.390 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.197 0.803 29 H 0.163 0.837 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.158 0.842 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.415 -19.167 0.396 20.937 hybrid contribution -2.313 -0.611 -0.823 2.530 sum 6.102 -19.778 -0.427 20.703 Atomic orbital electron populations 1.21511 0.79445 1.00656 1.01188 1.45909 1.04950 1.01572 1.78281 1.17331 0.91040 0.84978 0.97987 1.21504 0.91852 0.99670 1.01723 1.21237 0.99754 0.89958 1.01721 1.17781 0.88711 0.95868 0.99144 1.24052 1.01943 0.99102 1.08223 0.87332 1.30854 0.98358 1.03090 0.91336 1.70034 1.33990 1.08470 1.18394 0.82947 0.73297 0.70588 0.79550 1.15260 1.19810 1.17490 1.19947 0.91002 0.81281 1.21890 1.49337 1.00937 1.03114 1.08965 1.95900 0.92639 1.96371 1.75625 1.95829 1.68384 1.19834 1.69750 1.19361 0.98932 0.90079 1.15509 1.20619 0.92089 0.82680 0.95763 1.22572 0.99618 1.03702 0.97576 1.22563 1.00888 1.03608 0.96526 1.21970 0.95176 0.95314 0.93808 1.58774 1.22302 1.53448 1.04442 0.93270 0.89322 0.95643 0.80320 0.83679 0.87652 0.87994 0.91514 0.89124 0.92656 0.92269 0.88865 0.91771 0.91814 0.90471 0.84155 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.36 8.38 127.77 1.07 4.43 16 2 N -0.60 -17.23 2.87 -674.37 -1.94 -19.17 16 3 C 0.19 7.33 6.14 39.17 0.24 7.57 16 4 C -0.13 -4.23 6.62 22.18 0.15 -4.08 16 5 C -0.11 -4.10 7.85 22.57 0.18 -3.93 16 6 C -0.01 -0.47 5.18 -21.24 -0.11 -0.58 16 7 C -0.30 -14.94 7.83 24.76 0.19 -14.75 16 8 H 0.11 6.03 5.81 -2.91 -0.02 6.01 16 9 C -0.01 -0.29 5.25 87.22 0.46 0.17 16 10 N -0.69 -27.64 12.64 23.22 0.29 -27.35 16 11 Si 1.12 34.39 30.06 68.60 2.06 36.45 16 12 H -0.23 -5.88 7.11 99.48 0.71 -5.17 16 13 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 14 H -0.25 -7.19 7.11 99.48 0.71 -6.49 16 15 C -0.03 -1.48 6.90 36.68 0.25 -1.23 16 16 N 0.02 1.06 4.98 -45.75 -0.23 0.83 16 17 O -0.50 -36.08 19.12 3.51 0.07 -36.02 16 18 O -0.42 -29.03 16.21 3.51 0.06 -28.97 16 19 C -0.21 -10.53 8.61 22.18 0.19 -10.34 16 20 C 0.17 3.35 0.81 3.60 0.00 3.35 16 21 C -0.18 -3.13 7.71 71.98 0.55 -2.57 16 22 C -0.18 -3.08 8.28 71.98 0.60 -2.48 16 23 C 0.07 0.96 5.01 86.30 0.43 1.40 16 24 N -0.86 -12.52 7.53 -186.72 -1.41 -13.92 16 25 H 0.05 1.50 7.66 -2.38 -0.02 1.48 16 26 H 0.09 2.05 5.71 -2.39 -0.01 2.03 16 27 H 0.02 0.89 6.39 -2.39 -0.02 0.87 16 28 H 0.18 4.36 3.36 -2.91 -0.01 4.35 16 29 H 0.15 4.92 7.08 -2.91 -0.02 4.90 16 30 H 0.31 12.72 6.60 -92.71 -0.61 12.11 16 31 H 0.10 5.43 5.73 -2.91 -0.02 5.42 16 32 H 0.07 1.35 4.68 -2.39 -0.01 1.34 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.11 6.83 -2.38 -0.02 1.09 16 35 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 36 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 37 H 0.06 1.35 4.77 -2.39 -0.01 1.34 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 1.14 6.71 -2.39 -0.02 1.13 16 40 H 0.34 4.91 7.15 -89.69 -0.64 4.27 16 41 H 0.35 3.67 9.08 -89.70 -0.81 2.86 16 Total: -1.00 -81.29 319.38 2.93 -78.36 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -0.19 Total: 32.83 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 4.21 Total: -23.04 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -3.28 Total: -59.61 kcal Atomic # 8 Polarization: -65.11 SS G_CDS: 0.12 Total: -64.99 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.06 Total: 36.45 kcal Total: -81.29 2.93 -78.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170059708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.041 kcal (2) G-P(sol) polarization free energy of solvation -81.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds