Wall clock time and date at job start Tue Mar 31 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47178 * 2 1 4 4 C 1.42905 * 114.00096 * 180.02562 * 3 2 1 5 5 H 1.09010 * 115.54628 * 355.66635 * 4 3 2 6 6 C 1.53072 * 117.53439 * 141.38572 * 4 3 2 7 7 C 1.52996 * 117.50030 * 210.00459 * 4 3 2 8 8 H 1.08997 * 117.50005 * 144.97128 * 7 4 3 9 9 C 1.50708 * 117.49812 * 359.96726 * 7 4 3 10 10 O 1.21286 * 119.99664 * 0.09437 * 9 7 4 11 11 N 1.34778 * 119.99894 * 180.08577 * 9 7 4 12 12 C 1.39472 * 119.99506 * 180.02562 * 11 9 7 13 13 C 1.36102 * 126.22119 * 359.97438 * 12 11 9 14 14 C 1.39754 * 107.83187 * 180.02562 * 13 12 11 15 15 C 1.50703 * 125.84125 * 180.02562 * 14 13 12 16 16 N 1.30855 * 108.32130 * 359.75519 * 14 13 12 17 17 N 1.35265 * 126.21081 * 180.02562 * 12 11 9 18 18 C 1.46493 * 126.04777 * 359.93849 * 17 12 11 19 19 C 1.50706 * 109.47128 * 90.00375 * 18 17 12 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.08998 * 109.46782 * 299.99843 * 1 2 3 28 28 H 1.09000 * 109.47217 * 59.99436 * 1 2 3 29 29 H 1.08999 * 109.47218 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46886 * 240.00401 * 2 1 3 31 31 H 1.08991 * 109.47513 * 120.00498 * 2 1 3 32 32 H 1.08993 * 117.51679 * 359.97438 * 6 4 3 33 33 H 1.09003 * 117.49285 * 214.95404 * 6 4 3 34 34 H 0.96996 * 119.99630 * 0.02562 * 11 9 7 35 35 H 1.08009 * 126.08415 * 0.05712 * 13 12 11 36 36 H 1.08997 * 109.47275 * 89.99969 * 15 14 13 37 37 H 1.08996 * 109.47005 * 209.99684 * 15 14 13 38 38 H 1.09000 * 109.47068 * 329.99751 * 15 14 13 39 39 H 1.09001 * 109.47786 * 330.00647 * 18 17 12 40 40 H 1.09006 * 109.47401 * 210.00232 * 18 17 12 41 41 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9770 0.5196 0.0734 6 6 4.0522 2.5734 -0.8478 7 6 4.0427 2.6873 0.6780 8 1 4.9910 2.5542 1.1986 9 6 3.0967 3.6851 1.2952 10 8 1.8995 3.4978 1.2438 11 7 3.5812 4.7853 1.9045 12 6 2.7057 5.7084 2.4761 13 6 1.3473 5.6254 2.4920 14 6 0.8576 6.7504 3.1610 15 6 -0.5948 7.0658 3.4108 16 7 1.8760 7.4802 3.5386 17 7 3.0525 6.8493 3.1146 18 6 4.4174 7.3357 3.3304 19 6 4.8282 8.2092 2.1730 20 1 4.1414 8.3840 1.3580 21 6 6.0808 8.7850 2.1545 22 7 6.9173 8.5716 3.1467 23 14 6.5902 9.8670 0.7196 24 1 7.9733 10.3612 0.9389 25 1 6.5394 9.0783 -0.5376 26 1 5.6628 11.0223 0.6171 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.3745 3.2197 -1.4052 33 1 5.0068 2.3648 -1.3309 34 1 4.5386 4.9352 1.9453 35 1 0.7535 4.8311 2.0642 36 1 -0.9028 6.6307 4.3614 37 1 -0.7311 8.1467 3.4448 38 1 -1.2007 6.6483 2.6067 39 1 5.0979 6.4876 3.4049 40 1 4.4553 7.9142 4.2535 41 1 6.6529 8.0095 3.8916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068218721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:29 Heat of formation + Delta-G solvation = 21.967916 kcal Electronic energy + Delta-G solvation = -23469.176036 eV Core-core repulsion = 19966.120854 eV Total energy + Delta-G solvation = -3503.055182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87680 -39.64046 -37.96780 -35.27662 -34.68099 -33.95837 -32.04247 -30.88539 -29.06135 -28.32246 -25.65767 -24.63989 -23.00966 -22.89888 -22.30771 -20.87501 -19.70754 -19.16965 -17.65744 -17.38985 -16.44141 -15.91198 -15.64376 -15.37925 -15.13126 -14.46184 -14.21617 -13.87587 -13.77527 -13.25797 -13.11256 -12.77736 -12.75113 -12.54407 -12.48925 -12.23711 -12.01513 -11.79389 -11.66651 -11.32760 -11.13974 -11.13202 -10.80621 -10.68137 -10.27372 -10.21810 -9.87514 -9.41954 -9.27464 -9.22283 -8.65531 -7.86817 -7.42072 -6.65762 -4.42528 2.25204 2.81123 3.02399 3.31634 3.33741 3.35034 3.52384 3.53383 3.73088 3.82900 4.34515 4.54221 4.61472 4.74408 4.92684 4.93057 5.06281 5.14700 5.19672 5.20569 5.34871 5.51071 5.59295 5.65115 5.77877 5.81912 6.01815 6.02966 6.11226 6.19713 6.28635 6.42890 6.52531 6.71147 6.85854 7.14117 7.51061 7.60987 7.64720 7.84860 8.21633 8.43452 8.51525 8.64507 9.26995 10.70573 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.004496 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.658269 B = 6226.029140 C = 7697.728213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.324 6.324 4 C 0.054 3.946 5 H 0.119 0.881 6 C -0.157 4.157 7 C -0.192 4.192 8 H 0.131 0.869 9 C 0.545 3.455 10 O -0.487 6.487 11 N -0.641 5.641 12 C 0.306 3.694 13 C -0.296 4.296 14 C 0.052 3.948 15 C -0.062 4.062 16 N -0.288 5.288 17 N -0.345 5.345 18 C 0.248 3.752 19 C -0.617 4.617 20 H 0.059 0.941 21 C 0.027 3.973 22 N -0.900 5.900 23 Si 1.075 2.925 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.414 0.586 35 H 0.163 0.837 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 -16.911 -6.124 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.241 6.241 4 C -0.006 4.006 5 H 0.136 0.864 6 C -0.195 4.195 7 C -0.214 4.214 8 H 0.149 0.851 9 C 0.330 3.670 10 O -0.359 6.359 11 N -0.289 5.289 12 C 0.084 3.916 13 C -0.328 4.328 14 C -0.113 4.113 15 C -0.120 4.120 16 N -0.113 5.113 17 N -0.130 5.130 18 C 0.130 3.870 19 C -0.656 4.656 20 H 0.077 0.923 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.901 3.099 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.250 0.750 35 H 0.180 0.820 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.708 -14.916 -6.146 17.112 hybrid contribution -0.456 -1.613 0.321 1.707 sum -6.164 -16.529 -5.825 18.578 Atomic orbital electron populations 1.21705 0.93571 1.01838 1.03600 1.22541 0.95935 0.83975 0.99665 1.88184 1.16965 1.25435 1.93524 1.22570 0.83658 0.92825 1.01542 0.86359 1.23478 1.03201 1.02147 0.90686 1.22671 1.01272 0.99804 0.97655 0.85072 1.19447 0.88869 0.80546 0.78109 1.90684 1.15085 1.74457 1.55659 1.42811 1.10078 1.20654 1.55330 1.17946 0.90309 0.86338 0.97011 1.21280 0.91100 1.04453 1.15925 1.22049 0.95675 0.94110 0.99458 1.20018 0.88401 1.01885 1.01735 1.77342 0.89686 1.20157 1.24118 1.49041 1.07539 1.14331 1.42084 1.19619 0.72586 0.95376 0.99446 1.22205 1.03021 1.33680 1.06647 0.92266 1.25920 0.92388 0.97522 1.02005 1.70856 1.37590 1.36289 1.08784 0.83445 0.76419 0.75959 0.74031 1.20404 1.21168 1.21084 0.91480 0.91853 0.91351 0.93544 0.93451 0.87363 0.86845 0.75026 0.82004 0.91376 0.91503 0.91072 0.95003 0.93623 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.54 6.53 37.16 0.24 0.78 16 3 O -0.32 -4.32 8.48 -57.36 -0.49 -4.81 16 4 C 0.05 0.57 6.41 -26.70 -0.17 0.40 16 5 H 0.12 0.86 7.93 -51.92 -0.41 0.45 16 6 C -0.16 -1.64 10.19 -26.69 -0.27 -1.92 16 7 C -0.19 -2.32 6.19 -91.77 -0.57 -2.89 16 8 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 9 C 0.54 9.22 7.58 -10.98 -0.08 9.14 16 10 O -0.49 -9.53 12.05 -16.58 -0.20 -9.73 16 11 N -0.64 -11.91 5.42 -11.46 -0.06 -11.98 16 12 C 0.31 6.80 7.66 -153.16 -1.17 5.63 16 13 C -0.30 -6.39 9.58 -39.78 -0.38 -6.77 16 14 C 0.05 1.10 7.21 -82.44 -0.59 0.50 16 15 C -0.06 -0.96 10.44 36.01 0.38 -0.59 16 16 N -0.29 -6.98 12.57 33.65 0.42 -6.56 16 17 N -0.34 -8.42 3.60 -61.57 -0.22 -8.64 16 18 C 0.25 6.33 5.32 -5.19 -0.03 6.30 16 19 C -0.62 -17.10 9.39 -34.44 -0.32 -17.42 16 20 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 21 C 0.03 0.74 5.46 -17.82 -0.10 0.64 16 22 N -0.90 -25.62 13.65 55.43 0.76 -24.86 16 23 Si 1.07 24.42 29.90 -169.99 -5.08 19.33 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.41 7.10 7.96 -40.82 -0.33 6.78 16 35 H 0.16 3.43 5.83 -52.48 -0.31 3.13 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.03 0.77 7.37 -51.93 -0.38 0.39 16 40 H 0.05 1.23 8.01 -51.93 -0.42 0.82 16 41 H 0.27 7.49 7.22 -40.82 -0.29 7.20 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -34.18 350.91 -8.27 -42.44 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.99 Total: 6.68 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.69 Total: -7.17 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.90 Total: -52.04 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.69 Total: -14.54 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.08 Total: 19.33 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.18 -8.27 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068218721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.411 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds