Wall clock time and date at job start Tue Mar 31 2020 07:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47390 * 2 1 4 4 C 1.34782 * 120.00273 * 275.14721 * 3 2 1 5 5 O 1.21600 * 120.00456 * 174.13197 * 4 3 2 6 6 C 1.47401 * 119.99457 * 354.14197 * 4 3 2 7 7 C 1.37354 * 128.56522 * 306.33945 * 6 4 3 8 8 O 1.33498 * 106.34450 * 179.97438 * 7 6 4 9 9 N 1.20655 * 113.15405 * 0.02562 * 8 7 6 10 10 C 1.30024 * 112.30337 * 359.71343 * 9 8 7 11 11 C 1.50696 * 127.33795 * 180.30290 * 10 9 8 12 12 C 1.46503 * 120.00231 * 95.15283 * 3 2 1 13 13 H 1.09001 * 110.91125 * 3.90148 * 12 3 2 14 14 C 1.55153 * 111.00606 * 239.99970 * 12 3 2 15 15 C 1.54319 * 102.94400 * 206.42410 * 14 12 3 16 16 N 1.47018 * 107.27413 * 22.19198 * 15 14 12 17 17 C 1.36930 * 125.65304 * 180.79970 * 16 15 14 18 18 H 1.07998 * 120.00308 * 180.02562 * 17 16 15 19 19 C 1.38818 * 120.00116 * 0.02562 * 17 16 15 20 20 N 1.31622 * 119.99510 * 0.02562 * 19 17 16 21 21 Si 1.86789 * 120.00417 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47351 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47260 * 119.99974 * 21 19 17 24 24 H 1.48496 * 109.47437 * 239.99944 * 21 19 17 25 25 C 1.47426 * 108.70222 * 1.06122 * 16 15 14 26 26 H 1.09005 * 109.47152 * 300.00382 * 1 2 3 27 27 H 1.09000 * 109.47203 * 59.99888 * 1 2 3 28 28 H 1.09002 * 109.47549 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47152 * 239.99618 * 2 1 3 30 30 H 1.09000 * 109.47203 * 120.00112 * 2 1 3 31 31 H 1.08005 * 126.83372 * 359.96187 * 7 6 4 32 32 H 1.08998 * 109.47128 * 270.14910 * 11 10 9 33 33 H 1.09005 * 109.47143 * 30.14613 * 11 10 9 34 34 H 1.09002 * 109.46962 * 150.14071 * 11 10 9 35 35 H 1.08995 * 110.72089 * 88.05657 * 14 12 3 36 36 H 1.09003 * 110.86889 * 324.85911 * 14 12 3 37 37 H 1.09001 * 109.88135 * 262.77649 * 15 14 12 38 38 H 1.09001 * 109.88072 * 141.61081 * 15 14 12 39 39 H 0.96994 * 120.00201 * 180.02562 * 20 19 17 40 40 H 1.08998 * 110.36910 * 94.70785 * 25 16 15 41 41 H 1.09005 * 110.37000 * 217.03457 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1443 2.0514 -1.1625 5 8 2.4468 3.2292 -1.1556 6 6 1.9152 1.3568 -2.4422 7 6 2.4936 0.1997 -2.9040 8 8 1.9666 -0.0287 -4.1091 9 7 1.1644 0.8085 -4.4426 10 6 1.0063 1.7287 -3.5376 11 6 0.0893 2.9229 -3.5988 12 6 2.3700 2.0338 1.2636 13 1 2.2781 1.3395 2.0988 14 6 1.5041 3.3002 1.4953 15 6 2.4031 4.1738 2.3953 16 7 3.7889 3.7258 2.1944 17 6 4.8922 4.2373 2.8237 18 1 5.8717 3.8380 2.6059 19 6 4.7517 5.2692 3.7416 20 7 3.5579 5.7555 4.0073 21 14 6.2568 5.9675 4.5995 22 1 7.4709 5.2534 4.1288 23 1 6.3801 7.4134 4.2841 24 1 6.1163 5.7913 6.0673 25 6 3.7946 2.6388 1.1984 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2288 -0.4050 -2.3938 32 1 0.6174 3.7639 -4.0480 33 1 -0.7852 2.6790 -4.2020 34 1 -0.2278 3.1896 -2.5905 35 1 0.5768 3.0448 2.0081 36 1 1.2950 3.8055 0.5523 37 1 2.1195 4.0444 3.4398 38 1 2.3071 5.2214 2.1100 39 1 3.4597 6.4767 4.6484 40 1 3.9924 3.0371 0.2033 41 1 4.5385 1.8868 1.4618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033944113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:16 Heat of formation + Delta-G solvation = 66.277687 kcal Electronic energy + Delta-G solvation = -24454.310216 eV Core-core repulsion = 20953.176449 eV Total energy + Delta-G solvation = -3501.133766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.03345 -40.07513 -36.85838 -35.62912 -34.59439 -32.61120 -31.88291 -30.38929 -29.10954 -28.80728 -27.20099 -25.07111 -24.17861 -23.12324 -21.50061 -21.04471 -20.02940 -19.25100 -17.86281 -17.53247 -16.89978 -16.79726 -15.75316 -15.21624 -14.60803 -14.49131 -14.14856 -13.83186 -13.80952 -13.47006 -13.33744 -13.06997 -12.84943 -12.69236 -12.23475 -12.06924 -11.98631 -11.73116 -11.48298 -11.28344 -10.88447 -10.84578 -10.69728 -10.40119 -10.06638 -10.02321 -9.96002 -9.75473 -9.62949 -9.28633 -8.58930 -8.39417 -6.73058 -5.64716 -2.97479 1.09193 1.71878 2.65041 2.86300 3.17872 3.43667 3.49083 3.51575 3.92629 4.18539 4.51622 4.57788 4.77898 4.87048 5.05187 5.15569 5.22678 5.37069 5.40084 5.46009 5.49006 5.52387 5.55860 5.63534 5.64171 5.80616 5.87157 5.92693 6.03361 6.21080 6.48752 6.58093 6.64629 6.72684 7.16307 7.49211 7.63007 7.73331 7.89649 8.05111 8.26402 8.33153 9.28533 9.88843 10.55414 11.47054 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.003956 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.244335 B = 7076.181890 C = 7230.329644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.596 5.596 4 C 0.588 3.412 5 O -0.497 6.497 6 C -0.235 4.235 7 C -0.021 4.021 8 O 0.095 5.905 9 N -0.360 5.360 10 C 0.060 3.940 11 C -0.076 4.076 12 C 0.132 3.868 13 H 0.095 0.905 14 C -0.154 4.154 15 C 0.184 3.816 16 N -0.601 5.601 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.126 3.874 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.251 0.749 40 H 0.042 0.958 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.658 -14.702 -11.842 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.329 5.329 4 C 0.374 3.626 5 O -0.371 6.371 6 C -0.242 4.242 7 C -0.102 4.102 8 O 0.034 5.966 9 N -0.067 5.067 10 C -0.102 4.102 11 C -0.133 4.133 12 C 0.029 3.971 13 H 0.113 0.887 14 C -0.193 4.193 15 C 0.059 3.941 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.001 4.001 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.242 0.758 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.952 -14.125 -12.862 20.692 hybrid contribution 1.009 0.565 1.320 1.755 sum -6.943 -13.560 -11.542 19.113 Atomic orbital electron populations 1.22193 0.95802 1.02041 1.02740 1.21663 0.94725 0.82701 1.03053 1.47872 1.64885 1.13875 1.06292 1.16904 0.77970 0.86027 0.81724 1.90887 1.45151 1.14567 1.86515 1.22488 1.04004 0.98647 0.99058 1.26276 1.00006 0.96910 0.87046 1.84541 1.41596 1.40281 1.30147 1.73626 1.08882 1.01708 1.22507 1.24822 0.98757 0.97918 0.88750 1.20209 0.96687 0.92184 1.04264 1.22479 0.97505 0.94334 0.82759 0.88746 1.23256 0.97994 0.96393 1.01675 1.21063 0.81885 0.95426 0.95693 1.44317 1.03611 1.38497 1.46360 1.19093 0.85974 1.13426 1.16727 0.90485 1.24789 0.96851 0.98955 0.99941 1.69980 1.20184 1.29254 1.37566 0.86045 0.81834 0.78776 0.79123 1.20562 1.21797 1.21822 1.21857 0.92413 0.91071 0.94783 0.91776 0.92753 0.91657 0.90984 0.89707 0.75841 0.89387 0.90273 0.89679 0.92708 0.90616 0.93757 0.93893 0.93889 0.94005 0.94871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.20 37.16 0.38 -1.14 16 2 C 0.10 0.96 5.96 -4.05 -0.02 0.94 16 3 N -0.60 -8.28 2.57 -164.94 -0.42 -8.70 16 4 C 0.59 9.13 6.85 -12.53 -0.09 9.05 16 5 O -0.50 -10.01 13.17 5.28 0.07 -9.94 16 6 C -0.23 -2.94 5.35 -102.89 -0.55 -3.49 16 7 C -0.02 -0.19 10.39 30.41 0.32 0.12 16 8 O 0.10 1.01 11.06 18.64 0.21 1.22 16 9 N -0.36 -4.47 12.01 34.78 0.42 -4.05 16 10 C 0.06 0.74 7.59 -79.76 -0.61 0.14 16 11 C -0.08 -0.81 10.49 36.00 0.38 -0.43 16 12 C 0.13 2.31 3.55 -65.78 -0.23 2.07 16 13 H 0.09 1.51 7.80 -51.93 -0.40 1.11 16 14 C -0.15 -3.05 6.32 -24.90 -0.16 -3.21 16 15 C 0.18 4.67 5.37 -3.07 -0.02 4.65 16 16 N -0.60 -15.95 3.39 -170.07 -0.58 -16.53 16 17 C -0.22 -6.43 10.28 -15.06 -0.15 -6.58 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.71 10.31 55.49 0.57 -27.14 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.13 2.73 6.58 -2.52 -0.02 2.71 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.53 4.99 -51.93 -0.26 0.27 16 30 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 31 H 0.23 1.16 7.61 -52.48 -0.40 0.76 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.59 6.07 -51.93 -0.32 1.27 16 37 H 0.04 1.20 7.40 -51.93 -0.38 0.82 16 38 H 0.04 1.23 7.49 -51.93 -0.39 0.84 16 39 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.04 0.99 5.74 -51.93 -0.30 0.69 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -34.52 333.94 -6.37 -40.90 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.78 Total: -2.79 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.87 Total: 4.46 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.01 Total: -56.42 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.28 Total: -8.72 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.52 -6.37 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033944113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.174 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds