Wall clock time and date at job start Tue Mar 31 2020 07:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 N 1.41597 * 113.99922 * 2 1 4 4 C 1.46497 * 119.99973 * 275.46943 * 3 2 1 5 5 C 1.34778 * 120.00252 * 95.46904 * 3 2 1 6 6 O 1.21590 * 119.99966 * 186.02918 * 5 3 2 7 7 C 1.47539 * 119.99803 * 6.03357 * 5 3 2 8 8 C 1.40351 * 120.47905 * 8.42472 * 7 5 3 9 9 C 1.36849 * 118.49814 * 179.97438 * 8 7 5 10 10 C 1.39405 * 119.37838 * 0.02562 * 9 8 7 11 11 N 1.38456 * 119.53732 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00386 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47087 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47192 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00402 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99965 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00048 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99717 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47195 * 90.00228 * 19 17 15 21 21 H 1.48501 * 109.47023 * 209.99758 * 19 17 15 22 22 H 1.48495 * 109.47467 * 330.00270 * 19 17 15 23 23 N 1.32596 * 120.91670 * 359.97438 * 10 9 8 24 24 C 1.31675 * 121.64522 * 0.03840 * 23 10 9 25 25 H 1.09004 * 109.46927 * 299.99719 * 1 2 3 26 26 H 1.08996 * 109.47335 * 59.99673 * 1 2 3 27 27 H 1.08996 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47309 * 270.00540 * 4 3 2 29 29 H 1.09002 * 109.47443 * 29.99585 * 4 3 2 30 30 H 1.08995 * 109.47809 * 150.00394 * 4 3 2 31 31 H 1.08006 * 120.74759 * 359.95765 * 8 7 5 32 32 H 1.07999 * 120.31481 * 179.72229 * 9 8 7 33 33 H 0.97003 * 119.99156 * 180.02562 * 11 10 9 34 34 H 1.09004 * 109.47141 * 299.99967 * 12 11 10 35 35 H 1.08998 * 109.47124 * 59.99631 * 12 11 10 36 36 H 1.09004 * 109.46798 * 299.99818 * 13 12 11 37 37 H 1.08996 * 109.47224 * 59.99544 * 13 12 11 38 38 H 1.09004 * 109.47027 * 299.99523 * 14 13 12 39 39 H 1.08998 * 109.47262 * 59.99202 * 14 13 12 40 40 H 0.96994 * 120.00095 * 180.02562 * 18 17 15 41 41 H 1.07998 * 119.74729 * 179.97438 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.1924 2.0119 -1.2629 5 6 2.3807 1.8640 1.1619 6 8 2.7729 3.0148 1.1752 7 6 2.3163 1.0919 2.4175 8 6 2.0358 -0.2831 2.3941 9 6 1.9864 -0.9597 3.5826 10 6 2.2134 -0.2696 4.7723 11 7 2.1636 -0.9508 5.9767 12 6 1.8745 -2.3869 5.9947 13 6 1.8777 -2.8897 7.4397 14 6 1.5763 -4.3896 7.4584 15 6 1.5801 -4.8850 8.8816 16 1 1.7773 -4.1986 9.6918 17 6 1.3308 -6.2144 9.1495 18 7 1.0892 -7.0499 8.1631 19 14 1.3362 -6.8285 10.9137 20 1 -0.0311 -6.7143 11.4818 21 1 1.7667 -8.2495 10.9418 22 1 2.2771 -6.0101 11.7199 23 7 2.4764 1.0300 4.7666 24 6 2.5330 1.7184 3.6456 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1734 1.7739 -1.6742 29 1 1.4195 1.7112 -1.9702 30 1 2.1240 3.0849 -1.0843 31 1 1.8627 -0.7955 1.4592 32 1 1.7686 -2.0174 3.5990 33 1 2.3203 -0.4771 6.8086 34 1 0.8954 -2.5660 5.5502 35 1 2.6356 -2.9179 5.4231 36 1 2.8566 -2.7106 7.8845 37 1 1.1164 -2.3585 8.0109 38 1 0.5976 -4.5691 7.0135 39 1 2.3379 -4.9204 6.8872 40 1 0.9134 -7.9850 8.3515 41 1 2.7493 2.7761 3.6766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:28 Heat of formation + Delta-G solvation = 14.437947 kcal Electronic energy + Delta-G solvation = -22507.975271 eV Core-core repulsion = 19004.593565 eV Total energy + Delta-G solvation = -3503.381706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73584 -39.43488 -37.77098 -36.41063 -33.74069 -33.33765 -32.66696 -31.64445 -29.81938 -27.87473 -26.92861 -26.12516 -23.95251 -23.36805 -22.28493 -20.83281 -20.41786 -18.44178 -17.84482 -17.03456 -16.54859 -16.42722 -16.07665 -15.40341 -15.16856 -14.99286 -14.61676 -14.55094 -14.29390 -14.10291 -13.88558 -13.30026 -13.10841 -12.94150 -12.55638 -12.31840 -12.22476 -12.08223 -11.89221 -10.98957 -10.90562 -10.82805 -10.63313 -10.31481 -10.26187 -9.94943 -9.72084 -9.58368 -9.41065 -9.35543 -9.21440 -8.44036 -7.71637 -6.09138 -4.12015 0.84959 1.38380 1.49623 2.67522 3.19946 3.26933 3.33679 3.37042 3.67406 3.96000 4.39169 4.62588 4.68385 4.83092 4.84568 4.88689 5.02867 5.06149 5.08733 5.17517 5.23641 5.27230 5.35772 5.49063 5.55550 5.75198 5.93127 5.99362 6.04782 6.11385 6.38400 6.44704 6.60925 6.85757 7.00883 7.07685 7.53478 7.59420 7.64860 7.79496 7.88964 8.12786 8.30518 8.94295 9.52768 11.02178 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.002419 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.315411 B =11574.118367 C =12279.676209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.141 6.141 3 N -0.483 5.483 4 C 0.085 3.915 5 C 0.590 3.410 6 O -0.530 6.530 7 C -0.281 4.281 8 C -0.002 4.002 9 C -0.254 4.254 10 C 0.432 3.568 11 N -0.705 5.705 12 C 0.118 3.882 13 C -0.121 4.121 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.558 5.558 24 C 0.220 3.780 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.138 0.862 33 H 0.406 0.594 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 15.345 -18.658 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.144 6.144 3 N -0.264 5.264 4 C -0.055 4.055 5 C 0.383 3.617 6 O -0.408 6.408 7 C -0.290 4.290 8 C -0.027 4.027 9 C -0.279 4.279 10 C 0.193 3.807 11 N -0.332 5.332 12 C -0.005 4.005 13 C -0.159 4.159 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.277 5.277 24 C 0.058 3.942 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.181 0.819 32 H 0.156 0.844 33 H 0.242 0.758 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.563 15.728 -17.874 23.815 hybrid contribution -0.484 -0.852 0.413 1.063 sum -1.047 14.876 -17.461 22.963 Atomic orbital electron populations 1.23424 0.81292 1.04372 1.01788 1.90490 1.20565 1.07526 1.95816 1.49862 1.59294 1.09892 1.07328 1.21903 1.02240 0.97392 0.84011 1.18169 0.76064 0.85252 0.82217 1.90805 1.48418 1.16575 1.85038 1.20263 1.19212 0.95586 0.93969 1.22267 0.88203 0.92777 0.99439 1.21282 1.12893 1.02065 0.91661 1.18801 0.86607 0.88207 0.87076 1.45012 1.73085 1.09675 1.05428 1.21840 1.00482 0.77383 1.00811 1.21889 1.01400 1.00806 0.91846 1.19026 0.97194 0.87507 0.97518 1.21192 1.48445 0.93961 0.92559 0.92595 1.25022 0.95187 0.96983 0.97222 1.69950 1.48181 1.04104 1.31118 0.86570 0.78346 0.78063 0.84894 1.20618 1.21163 1.19849 1.67390 1.23002 1.06606 1.30654 1.22586 0.86966 0.99280 0.85329 0.92438 0.92579 0.87083 0.91588 0.90661 0.89215 0.81901 0.84378 0.75796 0.91707 0.91646 0.92449 0.92472 0.96275 0.96237 0.92881 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 10.90 101.05 1.10 1.03 16 2 O -0.14 -1.22 7.61 -11.47 -0.09 -1.31 16 3 N -0.48 -4.79 3.36 -68.15 -0.23 -5.02 16 4 C 0.08 0.59 10.83 59.85 0.65 1.24 16 5 C 0.59 7.35 7.70 -12.47 -0.10 7.25 16 6 O -0.53 -7.70 15.94 5.29 0.08 -7.62 16 7 C -0.28 -3.58 5.88 -104.82 -0.62 -4.20 16 8 C 0.00 -0.02 8.85 -39.29 -0.35 -0.37 16 9 C -0.25 -3.28 9.25 -39.65 -0.37 -3.65 16 10 C 0.43 6.24 7.64 -155.28 -1.19 5.06 16 11 N -0.71 -10.09 5.71 -60.45 -0.34 -10.43 16 12 C 0.12 1.80 4.87 -4.04 -0.02 1.78 16 13 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 14 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 N -0.56 -8.23 10.38 -12.14 -0.13 -8.35 16 24 C 0.22 2.95 10.76 -17.13 -0.18 2.77 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.66 7.35 -51.93 -0.38 0.27 16 31 H 0.16 1.67 4.53 -54.08 -0.25 1.42 16 32 H 0.14 1.65 6.66 -52.49 -0.35 1.30 16 33 H 0.41 5.58 8.59 -40.82 -0.35 5.22 16 34 H 0.06 0.97 7.90 -51.93 -0.41 0.55 16 35 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.16 1.96 7.68 -52.49 -0.40 1.56 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -31.73 348.60 -7.39 -39.11 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.90 Total: 1.61 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.76 Total: -4.05 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.04 Total: -49.11 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.00 Total: -8.93 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.73 -7.39 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.551 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds