Wall clock time and date at job start Tue Mar 31 2020 07:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 N 1.41597 * 113.99922 * 2 1 4 4 C 1.46497 * 119.99973 * 275.46943 * 3 2 1 5 5 C 1.34778 * 120.00252 * 95.46904 * 3 2 1 6 6 O 1.21590 * 119.99966 * 186.02918 * 5 3 2 7 7 C 1.47539 * 119.99803 * 6.03357 * 5 3 2 8 8 C 1.40351 * 120.47905 * 8.42472 * 7 5 3 9 9 C 1.36849 * 118.49814 * 179.97438 * 8 7 5 10 10 C 1.39405 * 119.37838 * 0.02562 * 9 8 7 11 11 N 1.38456 * 119.53732 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00386 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47087 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47192 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00402 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99965 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00048 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99717 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47195 * 90.00228 * 19 17 15 21 21 H 1.48501 * 109.47023 * 209.99758 * 19 17 15 22 22 H 1.48495 * 109.47467 * 330.00270 * 19 17 15 23 23 N 1.32596 * 120.91670 * 359.97438 * 10 9 8 24 24 C 1.31675 * 121.64522 * 0.03840 * 23 10 9 25 25 H 1.09004 * 109.46927 * 299.99719 * 1 2 3 26 26 H 1.08996 * 109.47335 * 59.99673 * 1 2 3 27 27 H 1.08996 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47309 * 270.00540 * 4 3 2 29 29 H 1.09002 * 109.47443 * 29.99585 * 4 3 2 30 30 H 1.08995 * 109.47809 * 150.00394 * 4 3 2 31 31 H 1.08006 * 120.74759 * 359.95765 * 8 7 5 32 32 H 1.07999 * 120.31481 * 179.72229 * 9 8 7 33 33 H 0.97003 * 119.99156 * 180.02562 * 11 10 9 34 34 H 1.09004 * 109.47141 * 299.99967 * 12 11 10 35 35 H 1.08998 * 109.47124 * 59.99631 * 12 11 10 36 36 H 1.09004 * 109.46798 * 299.99818 * 13 12 11 37 37 H 1.08996 * 109.47224 * 59.99544 * 13 12 11 38 38 H 1.09004 * 109.47027 * 299.99523 * 14 13 12 39 39 H 1.08998 * 109.47262 * 59.99202 * 14 13 12 40 40 H 0.96994 * 120.00095 * 180.02562 * 18 17 15 41 41 H 1.07998 * 119.74729 * 179.97438 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.1924 2.0119 -1.2629 5 6 2.3807 1.8640 1.1619 6 8 2.7729 3.0148 1.1752 7 6 2.3163 1.0919 2.4175 8 6 2.0358 -0.2831 2.3941 9 6 1.9864 -0.9597 3.5826 10 6 2.2134 -0.2696 4.7723 11 7 2.1636 -0.9508 5.9767 12 6 1.8745 -2.3869 5.9947 13 6 1.8777 -2.8897 7.4397 14 6 1.5763 -4.3896 7.4584 15 6 1.5801 -4.8850 8.8816 16 1 1.7773 -4.1986 9.6918 17 6 1.3308 -6.2144 9.1495 18 7 1.0892 -7.0499 8.1631 19 14 1.3362 -6.8285 10.9137 20 1 -0.0311 -6.7143 11.4818 21 1 1.7667 -8.2495 10.9418 22 1 2.2771 -6.0101 11.7199 23 7 2.4764 1.0300 4.7666 24 6 2.5330 1.7184 3.6456 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1734 1.7739 -1.6742 29 1 1.4195 1.7112 -1.9702 30 1 2.1240 3.0849 -1.0843 31 1 1.8627 -0.7955 1.4592 32 1 1.7686 -2.0174 3.5990 33 1 2.3203 -0.4771 6.8086 34 1 0.8954 -2.5660 5.5502 35 1 2.6356 -2.9179 5.4231 36 1 2.8566 -2.7106 7.8845 37 1 1.1164 -2.3585 8.0109 38 1 0.5976 -4.5691 7.0135 39 1 2.3379 -4.9204 6.8872 40 1 0.9134 -7.9850 8.3515 41 1 2.7493 2.7761 3.6766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:28 Heat of formation + Delta-G solvation = -5.395888 kcal Electronic energy + Delta-G solvation = -22508.835331 eV Core-core repulsion = 19004.593565 eV Total energy + Delta-G solvation = -3504.241766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71048 -40.38478 -38.54777 -37.67259 -35.51575 -34.07271 -33.80624 -33.22765 -31.00759 -28.79123 -28.06574 -27.07508 -25.31699 -24.52330 -23.52339 -22.09640 -21.60214 -19.29347 -18.88314 -18.56437 -17.85519 -17.24427 -17.12214 -16.52214 -16.46744 -16.30607 -15.80551 -15.47250 -15.28740 -15.27582 -14.98236 -14.29709 -14.09648 -13.78537 -13.69949 -13.65932 -13.59871 -13.31982 -12.81254 -12.79006 -12.53180 -12.37840 -11.81410 -11.65073 -11.48364 -11.21596 -11.20986 -11.16593 -10.83334 -10.54506 -10.39544 -10.14173 -8.79547 -8.20395 -6.30257 -0.17016 0.37790 0.79833 1.41491 1.41845 1.52730 1.70751 2.06490 2.41960 2.85409 2.96314 3.13853 3.61512 3.93223 3.98405 4.04515 4.08604 4.21485 4.26548 4.37276 4.41255 4.44313 4.55736 4.56091 4.75841 4.78290 4.85060 4.93111 4.94597 5.09803 5.14840 5.16487 5.27591 5.47708 5.53057 5.72721 5.84829 5.91449 6.24291 6.27172 6.49647 6.86497 6.90500 7.06041 7.38905 8.91226 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.002419 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.315411 B =11574.118367 C =12279.676209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.148 6.148 3 N -0.481 5.481 4 C 0.080 3.920 5 C 0.586 3.414 6 O -0.559 6.559 7 C -0.282 4.282 8 C 0.007 3.993 9 C -0.257 4.257 10 C 0.417 3.583 11 N -0.706 5.706 12 C 0.134 3.866 13 C -0.106 4.106 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.059 0.941 17 C 0.001 3.999 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.265 1.265 23 N -0.574 5.574 24 C 0.210 3.790 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.183 0.817 32 H 0.149 0.851 33 H 0.408 0.592 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.000 1.000 39 H -0.001 1.001 40 H 0.264 0.736 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 15.477 -19.361 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.151 6.151 3 N -0.260 5.260 4 C -0.059 4.059 5 C 0.379 3.621 6 O -0.439 6.439 7 C -0.291 4.291 8 C -0.018 4.018 9 C -0.282 4.282 10 C 0.179 3.821 11 N -0.334 5.334 12 C 0.010 3.990 13 C -0.144 4.144 14 C -0.011 4.011 15 C -0.581 4.581 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.190 1.190 23 N -0.292 5.292 24 C 0.049 3.951 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.152 0.848 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.199 0.801 32 H 0.166 0.834 33 H 0.244 0.756 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.072 0.928 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.928 15.873 -18.610 24.478 hybrid contribution -0.407 -0.875 0.512 1.093 sum -1.335 14.998 -18.098 23.543 Atomic orbital electron populations 1.23639 0.79621 1.05930 1.02098 1.90437 1.22211 1.06631 1.95806 1.49844 1.58461 1.10250 1.07424 1.22115 1.03723 0.96882 0.83174 1.18108 0.76207 0.84952 0.82861 1.90787 1.49847 1.17598 1.85670 1.20425 1.18453 0.96068 0.94114 1.22476 0.87106 0.92332 0.99854 1.21447 1.12692 1.02592 0.91478 1.18950 0.87378 0.88385 0.87394 1.44793 1.73839 1.09068 1.05706 1.21518 1.00969 0.78043 0.98438 1.21595 1.01441 0.97124 0.94259 1.18913 0.95478 0.90987 0.95673 1.21679 1.47956 0.94398 0.94114 0.92260 1.25913 0.94879 0.97367 1.01511 1.70067 1.49241 1.04452 1.33309 0.85510 0.78674 0.77466 0.79785 1.19875 1.20860 1.18955 1.67346 1.23535 1.06949 1.31411 1.22760 0.87213 0.99709 0.85455 0.93470 0.90943 0.84838 0.90858 0.87910 0.89728 0.80107 0.83354 0.75596 0.91171 0.91384 0.92276 0.92138 0.98125 0.98222 0.92751 0.81217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.15 10.90 113.37 1.24 1.08 16 2 O -0.15 -2.22 7.61 -38.78 -0.30 -2.51 16 3 N -0.48 -8.69 3.36 -487.77 -1.64 -10.33 16 4 C 0.08 0.96 10.83 127.77 1.38 2.35 16 5 C 0.59 14.10 7.70 86.70 0.67 14.77 16 6 O -0.56 -16.08 15.94 -4.00 -0.06 -16.14 16 7 C -0.28 -6.94 5.88 -19.99 -0.12 -7.06 16 8 C 0.01 0.15 8.85 22.46 0.20 0.35 16 9 C -0.26 -6.31 9.25 22.23 0.21 -6.11 16 10 C 0.42 11.72 7.64 133.26 1.02 12.74 16 11 N -0.71 -19.61 5.71 -345.17 -1.97 -21.58 16 12 C 0.13 3.98 4.87 86.38 0.42 4.40 16 13 C -0.11 -3.88 5.27 30.59 0.16 -3.72 16 14 C 0.03 1.32 4.97 29.84 0.15 1.47 16 15 C -0.54 -29.61 9.11 25.60 0.23 -29.37 16 16 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 17 C 0.00 0.08 5.46 84.66 0.46 0.54 16 18 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 19 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 N -0.57 -16.69 10.38 -192.32 -2.00 -18.69 16 24 C 0.21 5.56 10.76 85.04 0.92 6.48 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 1.13 7.35 -2.39 -0.02 1.12 16 31 H 0.18 3.30 4.53 -28.20 -0.13 3.17 16 32 H 0.15 3.29 6.66 -2.91 -0.02 3.27 16 33 H 0.41 10.92 8.59 -92.71 -0.80 10.12 16 34 H 0.07 2.02 7.90 -2.38 -0.02 2.00 16 35 H 0.07 1.99 7.91 -2.39 -0.02 1.98 16 36 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.17 4.12 7.68 -2.91 -0.02 4.10 16 Total: -1.00 -67.73 348.60 3.41 -64.32 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.13 Total: 16.27 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.93 Total: -2.08 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -5.32 Total: -105.03 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.36 Total: -18.65 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.73 3.41 -64.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.927 kcal (2) G-P(sol) polarization free energy of solvation -67.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds