Wall clock time and date at job start Tue Mar 31 2020 07:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.46919 * 2 1 4 4 C 1.34229 * 116.99771 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00193 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00150 * 180.02562 * 4 3 2 7 7 N 1.46893 * 109.47491 * 174.29236 * 6 4 3 8 8 C 1.46902 * 110.99790 * 287.80151 * 7 6 4 9 9 C 1.50700 * 109.47356 * 294.85141 * 8 7 6 10 10 H 1.08009 * 119.99512 * 5.34774 * 9 8 7 11 11 C 1.37872 * 120.00150 * 185.35160 * 9 8 7 12 12 N 1.31512 * 120.00380 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99892 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47455 * 59.99537 * 13 11 9 15 15 H 1.48495 * 109.46982 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46977 * 299.99836 * 13 11 9 17 17 C 1.46900 * 111.00339 * 163.85026 * 7 6 4 18 18 C 1.50705 * 109.47135 * 189.99915 * 17 7 6 19 19 N 1.31795 * 119.11797 * 269.72400 * 18 17 7 20 20 C 1.32334 * 120.81429 * 179.75982 * 19 18 17 21 21 C 1.38597 * 119.10333 * 0.50642 * 20 19 18 22 22 C 1.50705 * 120.80102 * 179.77318 * 21 20 19 23 23 C 1.38595 * 118.40320 * 359.75305 * 21 20 19 24 24 N 1.31788 * 119.12183 * 89.99526 * 18 17 7 25 25 H 1.09000 * 109.47096 * 59.99784 * 1 2 3 26 26 H 1.09001 * 109.47408 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47388 * 300.00304 * 1 2 3 28 28 H 1.08997 * 109.46981 * 240.00188 * 2 1 3 29 29 H 1.08995 * 109.47193 * 119.99744 * 2 1 3 30 30 H 1.08995 * 109.46935 * 54.28415 * 6 4 3 31 31 H 1.09002 * 109.46683 * 294.29378 * 6 4 3 32 32 H 1.09008 * 109.47092 * 54.84727 * 8 7 6 33 33 H 1.09001 * 109.47468 * 174.85081 * 8 7 6 34 34 H 0.96997 * 120.00433 * 180.02562 * 12 11 9 35 35 H 1.08994 * 109.47328 * 69.99762 * 17 7 6 36 36 H 1.09006 * 109.46815 * 309.99646 * 17 7 6 37 37 H 1.07999 * 120.44840 * 180.28140 * 20 19 18 38 38 H 1.09000 * 109.47133 * 269.97859 * 22 21 20 39 39 H 1.09001 * 109.46857 * 29.97593 * 22 21 20 40 40 H 1.08992 * 109.47279 * 149.97652 * 22 21 20 41 41 H 1.07998 * 120.45160 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3814 2.8631 0.1370 8 6 5.7629 2.4669 1.4992 9 6 5.3469 3.5418 2.4701 10 1 4.7732 4.3891 2.1244 11 6 5.6987 3.4436 3.7996 12 7 6.3969 2.4117 4.2206 13 14 5.1836 4.7764 5.0029 14 1 3.7021 4.8732 5.0301 15 1 5.6831 4.4380 6.3598 16 1 5.7570 6.0778 4.5753 17 6 6.0107 4.1369 -0.2364 18 6 7.5041 3.9535 -0.3214 19 7 8.2377 4.1589 0.7541 20 6 9.5513 4.0030 0.7186 21 6 10.1538 3.6290 -0.4722 22 6 11.6473 3.4456 -0.5571 23 6 9.3498 3.4273 -1.5829 24 7 8.0422 3.5972 -1.4704 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5057 3.5019 0.8349 31 1 3.6684 3.4353 -0.9363 32 1 5.2664 1.5316 1.7580 33 1 6.8432 2.3307 1.5489 34 1 6.6441 2.3424 5.1560 35 1 5.7794 4.8908 0.5160 36 1 5.6287 4.4607 -1.2046 37 1 10.1463 4.1686 1.6046 38 1 12.1142 4.3907 -0.8346 39 1 12.0292 3.1222 0.4112 40 1 11.8785 2.6915 -1.3092 41 1 9.7845 3.1357 -2.5276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237807685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:29 Heat of formation + Delta-G solvation = -28.368387 kcal Electronic energy + Delta-G solvation = -23717.794237 eV Core-core repulsion = 20212.556308 eV Total energy + Delta-G solvation = -3505.237928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62089 -39.84698 -37.01908 -35.66750 -33.51924 -33.17714 -32.35440 -31.55452 -29.09690 -27.74539 -26.09559 -24.29987 -24.17663 -23.05470 -22.03791 -20.87430 -19.71049 -17.41409 -17.22053 -16.62690 -16.27308 -15.91122 -15.39241 -15.10102 -14.73059 -14.14769 -14.10379 -13.95475 -13.47728 -13.22437 -13.09003 -12.78181 -12.64883 -12.36444 -12.34761 -12.24043 -11.86123 -11.37803 -11.31472 -11.02000 -10.89991 -10.84697 -10.49700 -10.35134 -10.23882 -10.13645 -9.92000 -9.69926 -9.58194 -8.80836 -8.59739 -8.32126 -7.30662 -5.93712 -4.01152 1.29407 1.60726 2.91648 3.08904 3.33878 3.38257 3.40423 4.14862 4.47308 4.49372 4.67201 4.94001 5.05587 5.07378 5.07995 5.09821 5.18043 5.31387 5.39251 5.45068 5.56745 5.65954 5.74701 5.80751 5.86160 5.89969 5.93174 6.04416 6.05633 6.18897 6.22935 6.48528 6.86781 6.92828 7.13971 7.50779 7.60042 7.87023 7.99403 8.12637 8.30747 8.49491 8.70489 9.03552 9.63679 11.12922 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.005601 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.938441 B = 4997.870346 C = 6845.135990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.467 3.533 5 O -0.487 6.487 6 C 0.071 3.929 7 N -0.524 5.524 8 C 0.187 3.813 9 C -0.543 4.543 10 H 0.055 0.945 11 C 0.074 3.926 12 N -0.887 5.887 13 Si 0.886 3.114 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.128 3.872 18 C 0.338 3.662 19 N -0.471 5.471 20 C 0.146 3.854 21 C -0.211 4.211 22 C -0.099 4.099 23 C 0.137 3.863 24 N -0.508 5.508 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 1.416 -10.406 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.308 3.692 5 O -0.372 6.372 6 C -0.059 4.059 7 N -0.249 5.249 8 C 0.062 3.938 9 C -0.582 4.582 10 H 0.073 0.927 11 C -0.129 4.129 12 N -0.525 5.525 13 Si 0.714 3.286 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.001 4.001 18 C 0.071 3.929 19 N -0.183 5.183 20 C -0.021 4.021 21 C -0.215 4.215 22 C -0.157 4.157 23 C -0.030 4.030 24 N -0.222 5.222 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.177 0.823 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.365 0.763 -10.504 10.538 hybrid contribution 0.585 0.853 1.438 1.771 sum 0.220 1.617 -9.067 9.212 Atomic orbital electron populations 1.21781 0.93171 1.02463 1.03295 1.22877 0.94822 0.81150 1.02337 1.86475 1.25515 1.31569 1.84995 1.23752 0.79777 0.93218 0.72452 1.90636 1.60028 1.42919 1.43615 1.21379 0.90867 0.89964 1.03654 1.62168 1.04186 1.27342 1.31225 1.19891 0.97882 0.95814 0.80213 1.21488 1.35271 1.07533 0.93890 0.92700 1.24828 0.94675 0.95269 0.98165 1.69944 1.37745 1.29099 1.15743 0.86770 0.78748 0.82669 0.80452 1.20425 1.21406 1.20183 1.20602 0.85436 0.93132 1.00920 1.22974 0.97368 0.89256 0.83293 1.68514 1.05908 1.13778 1.30095 1.23186 0.91044 0.91279 0.96583 1.21642 0.98668 1.04573 0.96657 1.20571 0.90115 1.01962 1.03012 1.22990 0.89059 0.93027 0.97912 1.68227 1.12689 1.12844 1.28398 0.91746 0.90706 0.91535 0.91711 0.91430 0.89219 0.88400 0.94914 0.93992 0.92988 0.90428 0.90208 0.82263 0.91237 0.91238 0.91427 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.39 10.22 -39.26 -0.40 -6.79 16 4 C 0.47 9.44 7.54 36.01 0.27 9.72 16 5 O -0.49 -11.47 14.91 -18.75 -0.28 -11.75 16 6 C 0.07 1.35 5.43 -4.98 -0.03 1.33 16 7 N -0.52 -11.68 4.29 -238.96 -1.03 -12.70 16 8 C 0.19 5.00 4.53 -4.97 -0.02 4.98 16 9 C -0.54 -14.73 7.33 -34.44 -0.25 -14.99 16 10 H 0.05 1.43 5.97 -52.48 -0.31 1.11 16 11 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 12 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 13 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.13 2.57 5.17 -4.97 -0.03 2.54 16 18 C 0.34 6.96 6.41 -157.20 -1.01 5.96 16 19 N -0.47 -10.03 9.30 -10.73 -0.10 -10.12 16 20 C 0.15 2.53 11.01 -17.20 -0.19 2.34 16 21 C -0.21 -3.02 5.91 -104.36 -0.62 -3.64 16 22 C -0.10 -0.97 10.06 36.01 0.36 -0.60 16 23 C 0.14 2.08 11.01 -17.20 -0.19 1.89 16 24 N -0.51 -9.52 10.33 -10.72 -0.11 -9.63 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.09 1.76 6.45 -51.93 -0.33 1.43 16 31 H 0.10 1.50 7.81 -51.93 -0.41 1.09 16 32 H 0.03 0.98 6.58 -51.92 -0.34 0.64 16 33 H 0.04 1.25 6.64 -51.93 -0.34 0.90 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.08 1.63 6.32 -51.93 -0.33 1.30 16 36 H 0.08 1.35 7.86 -51.93 -0.41 0.95 16 37 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -34.62 346.61 -7.99 -42.62 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.83 Total: 1.01 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -1.18 Total: 11.43 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.50 Total: -58.24 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.68 Total: -18.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.62 -7.99 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237807685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.248 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds