Wall clock time and date at job start Tue Mar 31 2020 06:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21617 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.47415 * 120.00478 * 179.97438 * 16 15 14 19 19 N 1.36066 * 126.44916 * 359.69851 * 18 16 15 20 20 C 1.29936 * 108.48275 * 179.85782 * 19 18 16 21 21 O 1.34055 * 109.23816 * 0.40536 * 20 19 18 22 22 C 1.34257 * 108.22721 * 359.74344 * 21 20 19 23 23 C 1.50704 * 126.52554 * 179.97438 * 22 21 20 24 24 C 1.53006 * 117.49565 * 8.78575 * 23 22 21 25 25 C 1.53007 * 117.49429 * 300.13202 * 23 22 21 26 26 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 27 27 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 28 28 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 30 30 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 34 34 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 35 35 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 36 36 H 1.07997 * 125.38521 * 180.11920 * 20 19 18 37 37 H 1.08994 * 115.55100 * 154.46205 * 23 22 21 38 38 H 1.08994 * 117.49835 * 0.02562 * 24 23 22 39 39 H 1.09006 * 117.49109 * 145.02077 * 24 23 22 40 40 H 1.08998 * 117.49143 * 214.97737 * 25 23 22 41 41 H 1.08995 * 117.49912 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.5331 -1.6590 -6.7353 12 1 1.6240 0.6261 -7.5429 13 1 3.6057 -0.4071 -6.6024 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6274 -1.4462 3.7797 18 6 1.6062 0.3484 4.8665 19 7 0.9088 1.5165 4.8918 20 6 0.7568 1.8788 6.1304 21 8 1.3473 0.9788 6.9294 22 6 1.8814 0.0187 6.1579 23 6 2.6416 -1.1933 6.6316 24 6 2.6579 -1.4736 8.1357 25 6 3.9187 -0.9546 7.4398 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6054 -1.7199 -1.2950 30 1 3.1263 -0.7995 -1.2055 31 1 1.1488 0.8593 -2.3518 32 1 0.7072 1.9230 -5.4823 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7993 1.2057 35 1 1.1483 0.8592 2.3518 36 1 0.2407 2.7671 6.4633 37 1 2.6241 -2.0514 5.9599 38 1 2.1184 -0.7817 8.7824 39 1 2.6514 -2.5163 8.4533 40 1 4.7412 -1.6561 7.3000 41 1 4.2092 0.0788 7.6285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:45 Heat of formation + Delta-G solvation = 15.786050 kcal Electronic energy + Delta-G solvation = -22594.038886 eV Core-core repulsion = 19090.715638 eV Total energy + Delta-G solvation = -3503.323248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.77466 -39.57988 -37.61912 -36.78259 -35.11799 -34.31154 -32.41231 -30.66761 -29.96814 -26.78650 -25.62879 -24.23239 -23.86879 -22.83540 -22.33671 -21.11516 -20.63849 -19.89940 -18.35613 -17.17048 -17.04439 -16.67391 -16.11907 -15.81050 -15.38609 -15.21686 -14.57970 -14.22731 -14.07760 -13.78634 -13.55378 -13.03461 -12.69610 -12.62456 -12.29541 -12.02218 -12.01554 -11.66832 -11.42686 -11.30712 -11.03006 -10.87466 -10.86975 -10.67361 -10.54156 -10.39057 -10.17970 -9.96686 -9.64819 -9.20667 -8.90965 -8.84524 -6.89518 -5.74242 -3.02630 0.76116 1.77875 2.16122 3.08559 3.13675 3.44449 3.46456 3.50493 3.51700 3.74789 3.99273 4.37749 4.48453 4.61397 4.66774 4.76381 5.08507 5.17147 5.21220 5.25610 5.27048 5.44091 5.46203 5.60291 5.64428 5.72183 5.78590 5.86270 6.00470 6.01779 6.14923 6.30040 6.42999 6.49305 6.69457 6.81115 6.90365 7.09056 7.53669 7.72334 8.12473 8.44967 9.55976 10.13722 10.48551 11.48738 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036135 B = 0.002467 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.685558 B =11346.505561 C =11898.918251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.705 5.705 16 C 0.599 3.401 17 O -0.537 6.537 18 C -0.067 4.067 19 N -0.461 5.461 20 C 0.175 3.825 21 O -0.200 6.200 22 C 0.072 3.928 23 C -0.085 4.085 24 C -0.169 4.169 25 C -0.157 4.157 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.256 0.744 37 H 0.157 0.843 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -1.004 28.421 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.356 5.356 16 C 0.384 3.616 17 O -0.415 6.415 18 C -0.187 4.187 19 N -0.189 5.189 20 C -0.054 4.054 21 O -0.087 6.087 22 C 0.016 3.984 23 C -0.103 4.103 24 C -0.206 4.206 25 C -0.194 4.194 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.272 0.728 37 H 0.174 0.826 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.810 -1.506 27.807 27.859 hybrid contribution -0.122 0.372 -0.486 0.624 sum 0.688 -1.134 27.321 27.353 Atomic orbital electron populations 1.21794 0.94603 1.01916 1.01620 1.21558 0.96819 1.00575 0.94042 0.90449 1.20568 0.96581 0.94197 0.85349 1.42338 1.66815 1.27801 1.00583 1.19196 1.28706 1.05374 0.83705 0.91208 1.24740 1.01077 0.97402 0.97860 1.69651 1.43611 1.16493 1.28597 0.86248 0.78020 0.77671 0.84137 1.21273 1.21722 1.21286 1.21488 1.00287 0.95266 0.82667 1.45862 1.56530 1.27968 1.05231 1.16667 0.79314 0.83783 0.81786 1.90777 1.40715 1.23775 1.86227 1.21470 1.06868 0.96153 0.94223 1.70769 1.15498 1.10920 1.21746 1.28024 0.98347 0.95698 0.83292 1.84328 1.54964 1.29544 1.39818 1.22620 0.96749 0.90506 0.88566 1.20805 0.99605 0.93908 0.95994 1.23113 1.01356 1.03231 0.92941 1.23096 0.91428 1.03198 1.01657 0.93777 0.91116 0.92840 0.95970 0.96122 0.78178 0.93492 0.91069 0.91068 0.75496 0.72816 0.82562 0.88120 0.87428 0.87169 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.94 37.16 0.33 -1.89 16 2 C -0.11 -1.79 2.46 -90.62 -0.22 -2.01 16 3 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 4 C 0.16 3.26 5.65 -4.04 -0.02 3.24 16 5 N -0.73 -18.60 5.33 -59.91 -0.32 -18.92 16 6 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 10 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.13 1.83 5.06 -4.05 -0.02 1.81 16 15 N -0.71 -9.60 5.28 -61.39 -0.32 -9.92 16 16 C 0.60 8.62 7.81 -12.53 -0.10 8.53 16 17 O -0.54 -8.69 14.88 5.26 0.08 -8.61 16 18 C -0.07 -0.85 6.99 -83.02 -0.58 -1.43 16 19 N -0.46 -5.16 11.06 -11.48 -0.13 -5.29 16 20 C 0.17 1.34 13.19 51.96 0.69 2.03 16 21 O -0.20 -1.80 10.50 6.50 0.07 -1.73 16 22 C 0.07 0.78 6.90 -35.08 -0.24 0.54 16 23 C -0.09 -0.79 5.61 -91.76 -0.51 -1.31 16 24 C -0.17 -1.12 10.18 -26.69 -0.27 -1.39 16 25 C -0.16 -1.14 10.24 -26.69 -0.27 -1.41 16 26 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 27 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.38 10.19 6.85 -40.82 -0.28 9.91 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.41 5.20 7.38 -40.82 -0.30 4.90 16 36 H 0.26 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.16 1.65 6.66 -51.93 -0.35 1.30 16 38 H 0.10 0.63 8.01 -51.93 -0.42 0.21 16 39 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -33.69 350.24 -6.98 -40.67 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.86 Total: 9.36 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.48 Total: -0.74 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.05 Total: -61.86 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.15 Total: -10.34 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.69 -6.98 -40.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.461 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds