Wall clock time and date at job start Tue Mar 31 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46497 * 109.47408 * 295.00294 * 4 2 1 6 6 C 1.36934 * 120.00520 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00170 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00307 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00086 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47202 * 60.00005 * 10 8 6 12 12 H 1.48510 * 109.47075 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47428 * 299.99841 * 10 8 6 14 14 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 15 15 N 1.46490 * 109.47115 * 64.99762 * 14 2 1 16 16 C 1.34778 * 119.99990 * 179.97438 * 15 14 2 17 17 O 1.21616 * 120.00079 * 0.02562 * 16 15 14 18 18 C 1.47417 * 120.00148 * 179.97438 * 16 15 14 19 19 N 1.36068 * 126.44963 * 359.68813 * 18 16 15 20 20 C 1.29936 * 108.47648 * 179.85691 * 19 18 16 21 21 O 1.34047 * 109.24391 * 0.41481 * 20 19 18 22 22 C 1.34254 * 108.23049 * 359.73747 * 21 20 19 23 23 C 1.50693 * 126.53053 * 179.97438 * 22 21 20 24 24 C 1.52998 * 117.49766 * 8.79379 * 23 22 21 25 25 C 1.53003 * 117.50105 * 300.13332 * 23 22 21 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 30 30 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 31 31 H 0.97008 * 119.99817 * 359.97438 * 5 4 2 32 32 H 0.96994 * 120.00308 * 180.02562 * 9 8 6 33 33 H 1.09007 * 109.47135 * 184.99942 * 14 2 1 34 34 H 1.08996 * 109.46945 * 304.99450 * 14 2 1 35 35 H 0.96999 * 120.00755 * 0.02562 * 15 14 2 36 36 H 1.08003 * 125.37514 * 180.11647 * 20 19 18 37 37 H 1.09000 * 115.55407 * 154.45884 * 23 22 21 38 38 H 1.09000 * 117.50047 * 359.97438 * 24 23 22 39 39 H 1.09000 * 117.50335 * 145.01756 * 24 23 22 40 40 H 1.08996 * 117.50112 * 214.97269 * 25 23 22 41 41 H 1.09001 * 117.49654 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.6525 0.0352 2.4423 6 6 2.0011 -0.4209 3.6855 7 1 2.5622 -1.3382 3.7864 8 6 1.6344 0.2962 4.8160 9 7 0.9510 1.4143 4.6931 10 14 2.1094 -0.3265 6.5119 11 1 3.5884 -0.4180 6.6093 12 1 1.6031 0.6135 7.5441 13 1 1.5150 -1.6695 6.7306 14 6 2.0400 -0.7212 -1.2494 15 7 1.6524 0.0355 -2.4423 16 6 1.9964 -0.4129 -3.6659 17 8 2.6282 -1.4458 -3.7797 18 6 1.6059 0.3482 -4.8665 19 7 0.8967 1.5092 -4.8925 20 6 0.7533 1.8765 -6.1306 21 8 1.3455 0.9777 -6.9295 22 6 1.8818 0.0188 -6.1579 23 6 2.6436 -1.1921 -6.6315 24 6 3.0134 -1.2585 -8.1146 25 6 1.9147 -2.1675 -7.5579 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6055 -1.7198 1.2950 30 1 3.1264 -0.7995 1.2055 31 1 1.1488 0.8594 2.3517 32 1 0.6950 1.9156 5.4831 33 1 3.1264 -0.7994 -1.2057 34 1 1.6055 -1.7197 -1.2953 35 1 1.1488 0.8595 -2.3518 36 1 0.2343 2.7632 -6.4636 37 1 3.3522 -1.6109 -5.9169 38 1 2.7053 -0.4266 -8.7479 39 1 3.9650 -1.7213 -8.3759 40 1 2.1441 -3.2279 -7.4531 41 1 0.8841 -1.9336 -7.8245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:47 Heat of formation + Delta-G solvation = -9.456378 kcal Electronic energy + Delta-G solvation = -22596.584549 eV Core-core repulsion = 19092.166707 eV Total energy + Delta-G solvation = -3504.417842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.50271 -40.70152 -38.36877 -38.09028 -36.02056 -35.84359 -34.06820 -31.96223 -31.31898 -27.99706 -27.32956 -25.38607 -24.67182 -23.99304 -23.33731 -21.95210 -21.69970 -21.16412 -19.49590 -18.86985 -17.89506 -17.52095 -17.29827 -16.63998 -16.51211 -16.41193 -15.90441 -15.57398 -15.44097 -15.18349 -14.77130 -14.52175 -14.17097 -13.66369 -13.59668 -13.36307 -12.96500 -12.77213 -12.52857 -12.45383 -12.22316 -12.21147 -12.07648 -12.02661 -11.97057 -11.79066 -11.67152 -11.56894 -11.10909 -10.93186 -10.24449 -9.77625 -8.99544 -7.94836 -5.23527 -0.04264 1.02766 1.46009 1.47747 1.50883 1.56914 2.06263 2.16745 2.57051 2.82163 3.08367 3.31532 3.38533 3.67532 3.70788 3.85436 3.93715 3.94843 4.06085 4.11686 4.33104 4.43037 4.51978 4.61929 4.68122 4.68887 4.72988 4.91352 4.91696 5.01480 5.07144 5.11592 5.15127 5.16564 5.28828 5.35801 5.44315 5.49816 6.25131 6.27922 6.55938 7.04399 7.34060 8.09223 8.33454 9.28572 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.002463 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.506048 B =11365.700677 C =11910.433149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.075 0.925 4 C 0.159 3.841 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.075 0.925 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.138 3.862 15 N -0.701 5.701 16 C 0.596 3.404 17 O -0.563 6.563 18 C -0.099 4.099 19 N -0.493 5.493 20 C 0.198 3.802 21 O -0.196 6.196 22 C 0.077 3.923 23 C -0.114 4.114 24 C -0.149 4.149 25 C -0.151 4.151 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.022 0.978 31 H 0.376 0.624 32 H 0.252 0.748 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.307 0.693 37 H 0.138 0.862 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -1.374 -30.355 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.093 0.907 4 C 0.032 3.968 5 N -0.385 5.385 6 C -0.379 4.379 7 H 0.093 0.907 8 C -0.268 4.268 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.015 3.985 15 N -0.352 5.352 16 C 0.383 3.617 17 O -0.442 6.442 18 C -0.218 4.218 19 N -0.222 5.222 20 C -0.030 4.030 21 O -0.083 6.083 22 C 0.020 3.980 23 C -0.132 4.132 24 C -0.185 4.185 25 C -0.188 4.188 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.208 0.792 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.251 0.749 36 H 0.321 0.679 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.201 -1.906 -29.758 29.820 hybrid contribution -0.097 0.403 0.949 1.036 sum 0.104 -1.503 -28.809 28.849 Atomic orbital electron populations 1.21710 0.94025 1.01979 1.01484 1.21333 0.97098 1.00010 0.92955 0.90676 1.20706 0.96631 0.94136 0.85357 1.42517 1.66852 1.27802 1.01379 1.19604 1.27950 1.05359 0.84997 0.90728 1.25575 1.01703 0.97889 1.01628 1.69804 1.45079 1.17861 1.29228 0.85194 0.77897 0.77174 0.79387 1.20433 1.22063 1.20385 1.21245 0.99950 0.95057 0.82298 1.45754 1.56569 1.28009 1.04854 1.16958 0.78797 0.83599 0.82366 1.90753 1.41966 1.24821 1.86707 1.21275 1.08708 0.97720 0.94057 1.70735 1.16720 1.11008 1.23701 1.29196 0.95948 0.95654 0.82225 1.84361 1.55001 1.29339 1.39587 1.22801 0.95952 0.91023 0.88261 1.20778 1.03412 0.92570 0.96457 1.23220 1.01065 1.02580 0.91667 1.23196 0.98256 0.97569 0.99769 0.93689 0.92675 0.91359 0.95772 0.96003 0.79157 0.93954 0.91407 0.91066 0.74916 0.67876 0.84416 0.87371 0.85848 0.86250 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 8.94 71.98 0.64 -3.53 16 2 C -0.09 -3.04 2.46 -10.79 -0.03 -3.07 16 3 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.16 6.43 5.65 86.38 0.49 6.92 16 5 N -0.74 -38.22 5.33 -343.46 -1.83 -40.05 16 6 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 7 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 8 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 9 N -0.97 -59.80 13.06 21.65 0.28 -59.51 16 10 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 C 0.14 3.97 5.06 86.38 0.44 4.41 16 15 N -0.70 -18.92 5.28 -466.37 -2.46 -21.38 16 16 C 0.60 17.27 7.81 86.66 0.68 17.95 16 17 O -0.56 -18.58 14.88 -4.08 -0.06 -18.64 16 18 C -0.10 -2.47 6.99 40.41 0.28 -2.18 16 19 N -0.49 -10.36 11.06 -305.14 -3.37 -13.74 16 20 C 0.20 2.50 13.19 130.52 1.72 4.22 16 21 O -0.20 -3.08 10.50 0.44 0.00 -3.08 16 22 C 0.08 1.60 6.90 25.19 0.17 1.77 16 23 C -0.11 -2.06 5.61 -11.54 -0.06 -2.13 16 24 C -0.15 -1.67 10.18 30.62 0.31 -1.36 16 25 C -0.15 -1.96 10.24 30.62 0.31 -1.64 16 26 H 0.04 1.63 7.18 -2.39 -0.02 1.62 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.77 7.18 -2.38 -0.02 1.75 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.38 20.37 6.85 -92.70 -0.64 19.73 16 32 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.41 10.31 7.38 -92.71 -0.68 9.62 16 36 H 0.31 0.02 8.06 -2.91 -0.02 0.00 16 37 H 0.14 3.01 6.66 -2.39 -0.02 2.99 16 38 H 0.11 1.07 8.01 -2.39 -0.02 1.05 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.23 350.24 0.59 -72.64 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.26 Total: 30.85 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 6.26 Total: 4.20 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -7.38 Total: -134.68 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.23 0.59 -72.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.185 kcal (2) G-P(sol) polarization free energy of solvation -73.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds