Wall clock time and date at job start Tue Mar 31 2020 06:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47418 * 2 1 4 4 C 1.53005 * 109.46946 * 239.99825 * 2 1 3 5 5 N 1.46504 * 109.47000 * 184.99800 * 4 2 1 6 6 C 1.46494 * 120.00523 * 270.00617 * 5 4 2 7 7 C 1.36942 * 119.99378 * 90.00659 * 5 4 2 8 8 H 1.08002 * 119.99806 * 22.34017 * 7 5 4 9 9 C 1.38812 * 119.99781 * 202.33612 * 7 5 4 10 10 N 1.31615 * 120.00062 * 11.37041 * 9 7 5 11 11 Si 1.86798 * 119.99978 * 191.36273 * 9 7 5 12 12 H 1.48500 * 109.47147 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46783 * 120.00337 * 11 9 7 14 14 H 1.48500 * 109.47427 * 240.00260 * 11 9 7 15 15 N 1.46500 * 109.47151 * 120.00716 * 2 1 3 16 16 C 1.34778 * 119.99608 * 274.99517 * 15 2 1 17 17 O 1.21607 * 120.00373 * 0.02562 * 16 15 2 18 18 C 1.47426 * 119.99948 * 179.97438 * 16 15 2 19 19 C 1.36093 * 126.44911 * 180.02562 * 18 16 15 20 20 O 1.34247 * 106.95062 * 180.02562 * 19 18 16 21 21 C 1.34050 * 108.22927 * 0.02562 * 20 19 18 22 22 C 1.50702 * 125.38109 * 180.02562 * 21 20 19 23 23 C 1.52999 * 117.49938 * 8.72372 * 22 21 20 24 24 C 1.53002 * 117.49824 * 300.06245 * 22 21 20 25 25 N 1.29944 * 109.24266 * 0.02562 * 21 20 19 26 26 H 1.09004 * 109.47057 * 300.00012 * 1 2 3 27 27 H 1.08999 * 109.46788 * 59.99358 * 1 2 3 28 28 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47542 * 305.00292 * 4 2 1 30 30 H 1.09008 * 109.46596 * 65.00462 * 4 2 1 31 31 H 1.08996 * 109.47308 * 94.22229 * 6 5 4 32 32 H 1.09001 * 109.47321 * 214.22893 * 6 5 4 33 33 H 1.09007 * 109.47207 * 334.22306 * 6 5 4 34 34 H 0.97001 * 120.00089 * 179.97438 * 10 9 7 35 35 H 0.97000 * 120.00240 * 94.99213 * 15 2 1 36 36 H 1.08004 * 126.52100 * 0.02562 * 19 18 16 37 37 H 1.09002 * 115.54599 * 154.39540 * 22 21 20 38 38 H 1.08996 * 117.49838 * 359.97438 * 23 22 21 39 39 H 1.08992 * 117.49820 * 145.02011 * 23 22 21 40 40 H 1.08998 * 117.49541 * 214.98057 * 24 22 21 41 41 H 1.08999 * 117.50164 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3343 0.2340 -1.7612 7 6 4.0849 -1.9160 -0.6024 8 1 3.5336 -2.8400 -0.5089 9 6 5.3862 -1.8328 -0.1264 10 7 5.9793 -0.6616 -0.0337 11 14 6.2954 -3.3831 0.3826 12 1 5.4144 -4.5618 0.1829 13 1 7.5188 -3.5340 -0.4457 14 1 6.6761 -3.2862 1.8147 15 7 2.0183 -0.6908 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8575 1.1614 2.4119 18 6 2.6380 -0.7136 3.5609 19 6 2.8171 -0.1664 4.7940 20 8 3.2759 -1.1431 5.5927 21 6 3.3772 -2.2655 4.8669 22 6 3.8541 -3.5985 5.3833 23 6 4.0615 -3.7382 6.8927 24 6 5.2708 -3.6681 5.9569 25 7 2.9991 -2.0226 3.6476 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 1.7516 -0.1583 -2.1370 31 1 4.6022 0.9454 -0.9802 32 1 5.2404 -0.2029 -2.1812 33 1 3.7811 0.7484 -2.5471 34 1 6.8886 -0.6034 0.2993 35 1 2.2489 -1.6319 1.1525 36 1 2.6264 0.8585 5.0763 37 1 3.4865 -4.4708 4.8428 38 1 3.8534 -2.8659 7.5122 39 1 3.8307 -4.7025 7.3452 40 1 5.8351 -4.5863 5.7941 41 1 5.8581 -2.7498 5.9603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:25 Heat of formation + Delta-G solvation = 36.957326 kcal Electronic energy + Delta-G solvation = -24288.315900 eV Core-core repulsion = 20785.910707 eV Total energy + Delta-G solvation = -3502.405193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.18452 -38.96232 -37.29682 -36.25253 -34.57016 -33.91196 -31.26390 -30.27957 -29.61123 -26.13118 -25.54525 -24.23085 -24.02015 -22.60034 -21.75646 -20.96448 -19.83591 -19.56731 -17.77641 -16.78483 -16.57951 -16.29737 -15.65430 -15.44867 -14.86217 -14.67823 -14.20980 -13.68847 -13.49893 -13.32803 -12.98583 -12.78767 -12.50911 -12.15090 -11.87059 -11.77521 -11.44436 -11.35624 -11.24083 -10.80441 -10.76830 -10.66217 -10.64578 -10.49066 -10.34955 -10.20911 -9.96131 -9.76818 -9.50273 -8.68589 -8.50396 -8.20177 -6.71986 -5.67689 -3.13186 1.38503 2.29065 2.69952 3.40169 3.46875 3.48636 3.58161 3.67469 3.99529 4.04860 4.54168 4.57190 4.71262 4.90687 5.09537 5.30856 5.40477 5.41144 5.56363 5.57383 5.70408 5.76687 5.82725 5.88824 5.91903 5.94314 6.02502 6.20296 6.28549 6.32071 6.50155 6.55412 6.78658 6.92254 7.29160 7.43043 7.75410 7.78088 7.85176 8.36692 8.42994 8.92060 9.27263 9.90860 10.39812 11.36920 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.006855 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.082468 B = 4083.697244 C = 5682.992081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.165 3.835 7 C -0.252 4.252 8 H 0.067 0.933 9 C 0.010 3.990 10 N -0.901 5.901 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.293 1.293 14 H -0.290 1.290 15 N -0.665 5.665 16 C 0.601 3.399 17 O -0.561 6.561 18 C -0.048 4.048 19 C -0.007 4.007 20 O -0.201 6.201 21 C 0.216 3.784 22 C -0.068 4.068 23 C -0.164 4.164 24 C -0.159 4.159 25 N -0.439 5.439 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.044 0.956 33 H -0.004 1.004 34 H 0.249 0.751 35 H 0.413 0.587 36 H 0.228 0.772 37 H 0.147 0.853 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 -4.051 10.305 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.382 4.382 8 H 0.085 0.915 9 C -0.189 4.189 10 N -0.546 5.546 11 Si 0.729 3.271 12 H -0.202 1.202 13 H -0.220 1.220 14 H -0.217 1.217 15 N -0.313 5.313 16 C 0.385 3.615 17 O -0.441 6.441 18 C -0.168 4.168 19 C -0.080 4.080 20 O -0.088 6.088 21 C 0.008 3.992 22 C -0.087 4.087 23 C -0.201 4.201 24 C -0.197 4.197 25 N -0.168 5.168 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.060 0.940 35 H 0.250 0.750 36 H 0.244 0.756 37 H 0.164 0.836 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.491 -3.648 9.831 12.332 hybrid contribution 0.871 -0.525 0.827 1.310 sum -5.620 -4.173 10.657 12.750 Atomic orbital electron populations 1.22158 0.96731 1.01365 1.01580 1.21924 0.91928 0.98449 0.86921 0.90391 1.21198 0.86078 0.97935 0.93449 1.43925 0.98861 1.22692 1.66617 1.20788 0.92963 0.90453 0.93787 1.19100 0.97053 0.89379 1.32666 0.91520 1.24953 0.98693 0.96137 0.99104 1.70088 1.13188 1.21582 1.49707 0.86269 0.79773 0.83199 0.77899 1.20215 1.21981 1.21737 1.45560 1.63080 1.14861 1.07804 1.16654 0.77498 0.85356 0.81977 1.90732 1.53185 1.14962 1.85253 1.21972 1.08022 0.90685 0.96158 1.25151 0.99754 0.93929 0.89161 1.84276 1.64553 1.18651 1.41313 1.25024 1.00714 0.88173 0.85290 1.20218 1.01511 0.89566 0.97375 1.23108 1.01936 1.04256 0.90827 1.23148 0.90066 1.04656 1.01803 1.70785 1.13908 1.14632 1.17493 0.92944 0.92116 0.92935 0.93279 0.92838 0.95485 0.93690 0.98597 0.94044 0.74954 0.75570 0.83554 0.87914 0.87353 0.87172 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.48 37.16 0.35 -2.17 16 2 C 0.12 2.27 2.88 -67.93 -0.20 2.08 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 4 C 0.14 2.84 5.36 -4.04 -0.02 2.82 16 5 N -0.60 -14.78 2.82 -181.12 -0.51 -15.29 16 6 C 0.16 4.12 9.01 59.84 0.54 4.66 16 7 C -0.25 -6.72 8.02 -15.06 -0.12 -6.84 16 8 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 9 C 0.01 0.28 5.13 -17.43 -0.09 0.19 16 10 N -0.90 -26.45 10.59 55.49 0.59 -25.87 16 11 Si 0.90 22.09 29.57 -169.99 -5.03 17.06 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 N -0.67 -14.14 4.48 -54.88 -0.25 -14.39 16 16 C 0.60 13.10 7.78 -12.52 -0.10 13.00 16 17 O -0.56 -13.03 16.55 5.27 0.09 -12.94 16 18 C -0.05 -0.95 6.99 -83.02 -0.58 -1.53 16 19 C -0.01 -0.11 11.94 29.96 0.36 0.25 16 20 O -0.20 -3.12 10.40 6.54 0.07 -3.05 16 21 C 0.22 3.54 7.80 -13.08 -0.10 3.44 16 22 C -0.07 -0.84 6.33 -91.77 -0.58 -1.42 16 23 C -0.16 -1.48 10.16 -26.69 -0.27 -1.75 16 24 C -0.16 -1.70 10.24 -26.69 -0.27 -1.98 16 25 N -0.44 -8.59 11.06 -7.65 -0.08 -8.68 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 30 H 0.05 0.96 7.86 -51.92 -0.41 0.56 16 31 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 32 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 33 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 34 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 35 H 0.41 9.08 7.13 -40.82 -0.29 8.79 16 36 H 0.23 2.93 8.06 -52.48 -0.42 2.51 16 37 H 0.15 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.10 0.93 7.94 -51.93 -0.41 0.52 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -32.91 350.11 -6.95 -39.86 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.02 Total: 7.25 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -1.08 Total: 10.76 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.25 Total: -64.22 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.16 Total: -15.99 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.91 -6.95 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.817 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds