Wall clock time and date at job start Tue Mar 31 2020 06:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47856 * 2 1 4 4 C 1.53008 * 109.46866 * 119.99878 * 2 1 3 5 5 N 1.46503 * 109.46902 * 175.00001 * 4 2 1 6 6 C 1.46502 * 119.99536 * 269.99345 * 5 4 2 7 7 C 1.36929 * 120.00203 * 90.00132 * 5 4 2 8 8 H 1.07998 * 120.00605 * 23.61882 * 7 5 4 9 9 C 1.38820 * 119.99876 * 203.62434 * 7 5 4 10 10 N 1.31618 * 119.99744 * 11.29304 * 9 7 5 11 11 Si 1.86802 * 120.00000 * 191.29003 * 9 7 5 12 12 H 1.48503 * 109.46939 * 90.00126 * 11 9 7 13 13 H 1.48496 * 109.47248 * 209.99771 * 11 9 7 14 14 H 1.48499 * 109.47072 * 330.00575 * 11 9 7 15 15 N 1.46501 * 109.47033 * 239.99459 * 2 1 3 16 16 C 1.34773 * 120.00231 * 85.00466 * 15 2 1 17 17 O 1.21611 * 119.99853 * 359.97438 * 16 15 2 18 18 C 1.47422 * 120.00316 * 180.02562 * 16 15 2 19 19 C 1.36088 * 126.44611 * 180.02562 * 18 16 15 20 20 O 1.34259 * 106.94656 * 179.97438 * 19 18 16 21 21 C 1.34060 * 108.22796 * 0.02562 * 20 19 18 22 22 C 1.50698 * 125.37720 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.50046 * 8.72767 * 22 21 20 24 24 C 1.52992 * 117.50447 * 300.06491 * 22 21 20 25 25 N 1.29937 * 109.24009 * 359.72197 * 21 20 19 26 26 H 1.08999 * 109.47320 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47048 * 300.00441 * 1 2 3 28 28 H 1.09003 * 109.46772 * 60.00088 * 1 2 3 29 29 H 1.08994 * 109.46884 * 294.99252 * 4 2 1 30 30 H 1.08999 * 109.47055 * 54.99869 * 4 2 1 31 31 H 1.09005 * 109.47152 * 94.55621 * 6 5 4 32 32 H 1.08996 * 109.47178 * 214.55072 * 6 5 4 33 33 H 1.08999 * 109.47546 * 334.55530 * 6 5 4 34 34 H 0.97001 * 119.99930 * 179.97438 * 10 9 7 35 35 H 0.97006 * 120.00081 * 264.99847 * 15 2 1 36 36 H 1.07990 * 126.52824 * 359.97438 * 19 18 16 37 37 H 1.09002 * 115.54636 * 154.39389 * 22 21 20 38 38 H 1.09002 * 117.49650 * 359.97438 * 23 22 21 39 39 H 1.09003 * 117.50061 * 145.01536 * 23 22 21 40 40 H 1.08995 * 117.50226 * 214.98222 * 24 22 21 41 41 H 1.08999 * 117.49464 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9921 0.5614 7 6 4.2798 0.1647 1.7241 8 1 3.8835 0.8069 2.4966 9 6 5.5799 0.3442 1.2717 10 7 5.9917 -0.2798 0.1885 11 14 6.7448 1.4711 2.2004 12 1 7.4752 0.6885 3.2296 13 1 7.7173 2.0690 1.2507 14 1 5.9679 2.5517 2.8593 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0185 -2.3571 17 8 1.8575 1.1613 -2.4119 18 6 2.6379 -0.7137 -3.5609 19 6 2.8179 -0.1663 -4.7937 20 8 3.2764 -1.1431 -5.5926 21 6 3.3754 -2.2662 -4.8672 22 6 3.8512 -3.5994 -5.3839 23 6 4.4468 -3.6395 -6.7926 24 6 3.0618 -4.2357 -6.5296 25 7 3.0015 -2.0221 -3.6470 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -0.1582 2.1370 30 1 1.6053 -1.7198 1.2953 31 1 4.3534 -1.7644 -0.4800 32 1 5.0468 -2.2391 1.0891 33 1 3.4423 -2.8401 0.6068 34 1 6.9001 -0.1541 -0.1279 35 1 2.2490 -1.6319 -1.1525 36 1 2.6282 0.8587 -5.0758 37 1 4.2805 -4.2671 -4.6368 38 1 4.4942 -2.7015 -7.3458 39 1 5.2677 -4.3337 -6.9725 40 1 2.9719 -5.3219 -6.5365 41 1 2.1980 -3.6901 -6.9094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:28 Heat of formation + Delta-G solvation = 36.927966 kcal Electronic energy + Delta-G solvation = -23938.807924 eV Core-core repulsion = 20436.401458 eV Total energy + Delta-G solvation = -3502.406466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.28485 -39.05849 -37.39937 -36.28377 -34.67547 -33.94798 -31.21847 -30.38753 -29.74208 -26.09603 -25.56745 -24.32143 -24.11137 -22.70970 -21.77010 -20.98394 -19.95512 -19.68793 -17.82488 -16.76364 -16.72584 -16.47833 -15.74902 -15.40915 -14.89520 -14.76224 -14.26801 -13.68483 -13.54989 -13.46696 -13.04497 -12.79755 -12.60072 -12.09457 -11.92896 -11.88169 -11.54609 -11.38417 -11.04256 -10.86311 -10.82936 -10.75862 -10.73188 -10.61651 -10.47201 -10.13661 -9.91454 -9.81009 -9.58159 -8.78349 -8.53553 -8.29051 -6.68178 -5.66237 -3.13291 1.29670 2.17635 2.60072 3.42034 3.47877 3.48640 3.49726 3.62738 3.81479 3.96319 4.47091 4.55146 4.60884 4.81476 5.00750 5.20204 5.31779 5.40746 5.44956 5.55004 5.66723 5.72092 5.74661 5.77519 5.85479 5.90131 6.04421 6.15392 6.22097 6.29910 6.52042 6.58986 6.75288 6.92541 7.20212 7.40972 7.63786 7.79754 7.86657 8.20505 8.45110 8.79799 9.28817 9.91445 10.40270 11.38177 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.004787 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.703200 B = 5848.093205 C = 6685.558914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.087 0.913 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.257 4.257 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.902 5.902 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.676 5.676 16 C 0.602 3.398 17 O -0.551 6.551 18 C -0.052 4.052 19 C -0.002 4.002 20 O -0.200 6.200 21 C 0.219 3.781 22 C -0.067 4.067 23 C -0.164 4.164 24 C -0.159 4.159 25 N -0.445 5.445 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.041 0.959 33 H -0.006 1.006 34 H 0.250 0.750 35 H 0.404 0.596 36 H 0.229 0.771 37 H 0.148 0.852 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 -7.798 -12.592 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.105 0.895 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.205 1.205 15 N -0.324 5.324 16 C 0.387 3.613 17 O -0.430 6.430 18 C -0.172 4.172 19 C -0.075 4.075 20 O -0.087 6.087 21 C 0.010 3.990 22 C -0.086 4.086 23 C -0.201 4.201 24 C -0.197 4.197 25 N -0.174 5.174 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.013 0.987 34 H 0.060 0.940 35 H 0.240 0.760 36 H 0.245 0.755 37 H 0.166 0.834 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.449 -7.419 -12.162 16.076 hybrid contribution 0.994 0.891 -0.065 1.336 sum -6.455 -6.529 -12.227 15.290 Atomic orbital electron populations 1.22154 0.96735 1.01189 1.01712 1.21965 0.91782 0.99231 0.86299 0.89486 1.21198 0.85917 0.97242 0.94178 1.43898 0.99010 1.20924 1.68115 1.20853 0.94388 0.84973 0.98074 1.19180 0.94598 1.10635 1.14227 0.91425 1.25037 0.98913 0.99068 0.96311 1.70067 1.17052 1.45594 1.21967 0.86276 0.80999 0.80487 0.78892 1.21584 1.21872 1.20501 1.45605 1.64136 1.14202 1.08481 1.16634 0.77452 0.85409 0.81825 1.90758 1.52427 1.14807 1.85026 1.21972 1.08293 0.90700 0.96235 1.25183 0.99268 0.93955 0.89084 1.84294 1.64462 1.18538 1.41401 1.25014 1.00490 0.88206 0.85244 1.20234 1.05950 0.89160 0.93270 1.23117 0.97188 1.03824 0.95986 1.23133 0.95703 1.01221 0.99676 1.70730 1.14270 1.14546 1.17885 0.93122 0.91949 0.92972 0.92187 0.93975 0.94641 0.94042 0.98718 0.93963 0.75998 0.75486 0.83419 0.87859 0.87229 0.87193 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 37.16 0.35 -2.16 16 2 C 0.11 2.27 2.88 -67.93 -0.20 2.07 16 3 H 0.09 2.03 7.58 -51.93 -0.39 1.64 16 4 C 0.14 2.90 5.33 -4.04 -0.02 2.88 16 5 N -0.60 -14.95 2.78 -181.11 -0.50 -15.45 16 6 C 0.16 3.99 7.61 59.85 0.46 4.44 16 7 C -0.26 -7.14 9.66 -15.06 -0.15 -7.29 16 8 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 9 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 10 N -0.90 -26.83 10.66 55.49 0.59 -26.24 16 11 Si 0.90 22.51 29.57 -169.99 -5.03 17.48 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 N -0.68 -13.76 4.41 -54.88 -0.24 -14.00 16 16 C 0.60 12.71 7.78 -12.52 -0.10 12.62 16 17 O -0.55 -12.72 16.55 5.27 0.09 -12.63 16 18 C -0.05 -0.96 6.99 -83.02 -0.58 -1.54 16 19 C 0.00 -0.03 11.95 29.96 0.36 0.33 16 20 O -0.20 -2.87 10.40 6.48 0.07 -2.80 16 21 C 0.22 3.21 7.80 -13.08 -0.10 3.11 16 22 C -0.07 -0.70 6.33 -91.78 -0.58 -1.28 16 23 C -0.16 -1.29 10.16 -26.70 -0.27 -1.56 16 24 C -0.16 -1.21 10.24 -26.70 -0.27 -1.49 16 25 N -0.44 -7.88 11.06 -7.65 -0.08 -7.97 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 30 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 31 H 0.04 0.95 6.90 -51.93 -0.36 0.59 16 32 H 0.04 1.11 7.30 -51.93 -0.38 0.73 16 33 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.40 8.09 6.90 -40.82 -0.28 7.81 16 36 H 0.23 2.79 8.06 -52.49 -0.42 2.37 16 37 H 0.15 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.10 0.85 7.94 -51.93 -0.41 0.44 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -33.73 349.64 -7.02 -40.75 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.99 Total: 5.39 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.19 Total: 10.20 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.24 Total: -63.66 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.15 Total: -15.43 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.73 -7.02 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.680 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds