Wall clock time and date at job start Tue Mar 31 2020 06:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00550 * 2 1 4 4 N 1.46490 * 109.47370 * 179.97438 * 3 2 1 5 5 C 1.35038 * 124.88844 * 359.97257 * 4 3 2 6 6 C 1.35365 * 107.23287 * 179.76162 * 5 4 3 7 7 C 1.41508 * 105.49971 * 0.35983 * 6 5 4 8 8 C 1.47711 * 126.51583 * 179.89999 * 7 6 5 9 9 O 1.21567 * 119.99698 * 354.87368 * 8 7 6 10 10 N 1.34771 * 119.99682 * 174.87031 * 8 7 6 11 11 C 1.46497 * 120.00339 * 5.55159 * 10 8 7 12 12 C 1.50705 * 109.47005 * 275.41150 * 11 10 8 13 13 H 1.07998 * 119.99961 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99782 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00197 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99934 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47163 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47062 * 119.99500 * 16 14 12 19 19 H 1.48500 * 109.47218 * 239.99607 * 16 14 12 20 20 C 1.46508 * 119.99743 * 185.54765 * 10 8 7 21 21 C 1.52994 * 109.47356 * 265.02332 * 20 10 8 22 22 C 1.52998 * 117.51956 * 116.28232 * 21 20 10 23 23 C 1.52995 * 117.49917 * 184.91358 * 21 20 10 24 24 N 1.28472 * 124.88484 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.46843 * 60.00274 * 1 2 3 26 26 H 1.08993 * 109.47494 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47078 * 300.00248 * 1 2 3 28 28 H 1.08997 * 109.46863 * 59.99500 * 3 2 1 29 29 H 1.09004 * 109.46443 * 299.99738 * 3 2 1 30 30 H 1.08005 * 126.38248 * 0.03638 * 5 4 3 31 31 H 1.07995 * 127.24830 * 180.24188 * 6 5 4 32 32 H 1.09000 * 109.47151 * 35.41316 * 11 10 8 33 33 H 1.09005 * 109.47368 * 155.41281 * 11 10 8 34 34 H 0.97001 * 120.00179 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.46545 * 145.02432 * 20 10 8 36 36 H 1.08996 * 109.46934 * 25.02534 * 20 10 8 37 37 H 1.09003 * 115.55194 * 330.58724 * 21 20 10 38 38 H 1.09004 * 117.50371 * 214.97286 * 22 21 20 39 39 H 1.09009 * 117.49568 * 359.97438 * 22 21 20 40 40 H 1.08998 * 117.50171 * 359.97438 * 23 21 20 41 41 H 1.09000 * 117.49893 * 145.00239 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 6 4.1531 0.0244 0.0016 6 6 5.4714 0.3318 -0.0035 7 6 5.5301 1.7456 0.0010 8 6 6.7527 2.5746 0.0002 9 8 7.8445 2.0475 0.0894 10 7 6.6577 3.9152 -0.0995 11 6 5.3421 4.5595 -0.0845 12 6 4.7626 4.5509 -1.4757 13 1 5.3189 4.1100 -2.2896 14 6 3.5228 5.1068 -1.7094 15 7 2.8456 5.6442 -0.7184 16 14 2.8042 5.0955 -3.4337 17 1 3.7569 4.4363 -4.3626 18 1 1.5199 4.3500 -3.4298 19 1 2.5648 6.4916 -3.8794 20 6 7.8702 4.7284 -0.2228 21 6 8.2931 5.2265 1.1606 22 6 9.6401 4.7455 1.7038 23 6 9.4778 6.1919 1.2321 24 7 4.2864 2.1822 0.0003 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 0.8899 29 1 1.6888 1.8463 -0.8901 30 1 3.7266 -0.9678 0.0016 31 1 6.3032 -0.3570 -0.0079 32 1 4.6790 4.0161 0.5887 33 1 5.4454 5.5887 0.2597 34 1 1.9731 6.0350 -0.8828 35 1 7.6709 5.5818 -0.8710 36 1 8.6701 4.1250 -0.6519 37 1 7.4837 5.3691 1.8766 38 1 9.7170 4.5717 2.7772 39 1 10.2251 4.0736 1.0757 40 1 9.9563 6.4718 0.2936 41 1 9.4479 6.9697 1.9951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597145696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:40 Heat of formation + Delta-G solvation = 50.116755 kcal Electronic energy + Delta-G solvation = -24143.708311 eV Core-core repulsion = 20641.873754 eV Total energy + Delta-G solvation = -3501.834557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95320 -38.83181 -37.99674 -36.75098 -34.58406 -32.31870 -32.17132 -30.08569 -28.02691 -27.27782 -26.26607 -25.19668 -23.00991 -22.08271 -21.83121 -20.67872 -20.10073 -18.46534 -17.24242 -16.62801 -16.42324 -16.31243 -16.03794 -15.55002 -14.83340 -14.49797 -14.35973 -14.22573 -14.00288 -13.26431 -13.12408 -12.75491 -12.42826 -12.32263 -12.23310 -11.85491 -11.65047 -11.43121 -11.19861 -11.17600 -10.86025 -10.78542 -10.22040 -10.14589 -10.04564 -9.64398 -9.54816 -9.43637 -9.15484 -8.58781 -8.41713 -8.33912 -7.57222 -6.02111 -4.02296 2.43293 2.50608 2.77530 3.21558 3.31328 3.38088 3.79859 3.97046 4.22610 4.33462 4.43752 5.00783 5.08698 5.13724 5.16630 5.26100 5.29195 5.31985 5.34540 5.39163 5.41290 5.46324 5.82250 5.88568 5.92383 6.18115 6.22257 6.28322 6.32017 6.37288 6.44167 6.63559 6.68839 6.94187 7.06270 7.27491 7.54149 7.82286 7.91304 8.28088 8.42902 8.67704 9.00515 9.16371 9.59134 11.05689 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.006114 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.763967 B = 4578.443141 C = 6147.433626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.402 6.402 3 C 0.310 3.690 4 N -0.298 5.298 5 C -0.019 4.019 6 C -0.194 4.194 7 C -0.014 4.014 8 C 0.603 3.397 9 O -0.568 6.568 10 N -0.583 5.583 11 C 0.232 3.768 12 C -0.501 4.501 13 H 0.053 0.947 14 C 0.067 3.933 15 N -0.893 5.893 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.284 1.284 20 C 0.151 3.849 21 C -0.158 4.158 22 C -0.175 4.175 23 C -0.181 4.181 24 N -0.179 5.179 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.173 0.827 31 H 0.154 0.846 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.258 0.742 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -6.699 3.479 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.320 6.320 3 C 0.151 3.849 4 N -0.088 5.088 5 C -0.160 4.160 6 C -0.222 4.222 7 C -0.175 4.175 8 C 0.390 3.610 9 O -0.447 6.447 10 N -0.313 5.313 11 C 0.112 3.888 12 C -0.540 4.540 13 H 0.071 0.929 14 C -0.134 4.134 15 N -0.533 5.533 16 Si 0.710 3.290 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.210 1.210 20 C 0.027 3.973 21 C -0.178 4.178 22 C -0.212 4.212 23 C -0.219 4.219 24 N -0.014 5.014 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.190 0.810 31 H 0.171 0.829 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.791 -6.050 3.552 7.241 hybrid contribution -0.522 -0.435 -1.070 1.267 sum -2.314 -6.486 2.483 7.320 Atomic orbital electron populations 1.22756 0.78112 1.03508 1.01035 1.87651 1.21515 1.27065 1.95774 1.22130 0.74949 0.84362 1.03496 1.45608 1.06378 1.04402 1.52435 1.22638 0.91890 0.92753 1.08758 1.21644 0.95967 0.94541 1.10061 1.21919 0.91577 0.93040 1.10979 1.16918 0.86050 0.81771 0.76268 1.90662 1.27430 1.73289 1.53351 1.48092 1.09128 1.04987 1.69043 1.19753 0.77302 0.93349 0.98351 1.21366 1.02166 1.36597 0.93872 0.92869 1.24755 0.96715 0.95630 0.96250 1.69950 1.13343 1.39529 1.30472 0.86698 0.78933 0.77666 0.85655 1.19932 1.21363 1.21032 1.20878 0.87707 0.94896 0.93801 1.22778 0.91932 1.03089 0.99968 1.22955 1.00676 0.96708 1.00858 1.22902 1.03097 0.93047 1.02843 1.74557 0.99492 1.12252 1.15069 0.93147 0.88675 0.93157 0.89638 0.89466 0.80979 0.82881 0.91720 0.95057 0.93234 0.90136 0.90665 0.87795 0.89546 0.88724 0.88966 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.49 16 2 O -0.40 -5.21 9.75 -35.23 -0.34 -5.55 16 3 C 0.31 4.81 7.53 59.84 0.45 5.27 16 4 N -0.30 -5.66 3.70 -66.13 -0.24 -5.91 16 5 C -0.02 -0.33 10.83 -17.17 -0.19 -0.51 16 6 C -0.19 -3.69 10.81 -39.36 -0.43 -4.11 16 7 C -0.01 -0.32 6.74 -82.76 -0.56 -0.88 16 8 C 0.60 14.09 7.62 -12.39 -0.09 13.99 16 9 O -0.57 -13.68 16.49 5.31 0.09 -13.59 16 10 N -0.58 -13.22 2.47 -176.22 -0.44 -13.66 16 11 C 0.23 5.78 4.78 -5.19 -0.02 5.76 16 12 C -0.50 -13.36 8.05 -34.44 -0.28 -13.64 16 13 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -24.33 13.29 55.43 0.74 -23.60 16 16 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.15 2.93 5.68 -4.04 -0.02 2.91 16 21 C -0.16 -2.71 6.01 -90.63 -0.54 -3.25 16 22 C -0.17 -2.64 10.18 -26.73 -0.27 -2.91 16 23 C -0.18 -2.51 10.25 -26.73 -0.27 -2.79 16 24 N -0.18 -4.01 7.64 33.42 0.26 -3.76 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.17 2.37 7.71 -52.48 -0.40 1.97 16 31 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 32 H 0.07 1.71 5.65 -51.93 -0.29 1.41 16 33 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 34 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.08 1.54 8.11 -51.93 -0.42 1.11 16 36 H 0.07 1.46 7.09 -51.93 -0.37 1.09 16 37 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.45 8.03 -51.92 -0.42 1.04 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -31.35 351.23 -6.98 -38.33 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.09 Total: 3.59 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.21 Total: 3.02 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.31 Total: -46.92 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.26 Total: -19.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.35 -6.98 -38.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597145696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.442 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds