Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00550 * 2 1 4 4 N 1.46490 * 109.47370 * 179.97438 * 3 2 1 5 5 C 1.35038 * 124.88844 * 359.97257 * 4 3 2 6 6 C 1.35365 * 107.23287 * 179.76162 * 5 4 3 7 7 C 1.41508 * 105.49971 * 0.35983 * 6 5 4 8 8 C 1.47711 * 126.51583 * 179.89999 * 7 6 5 9 9 O 1.21567 * 119.99698 * 354.87368 * 8 7 6 10 10 N 1.34771 * 119.99682 * 174.87031 * 8 7 6 11 11 C 1.46497 * 120.00339 * 5.55159 * 10 8 7 12 12 C 1.50705 * 109.47005 * 275.41150 * 11 10 8 13 13 H 1.07998 * 119.99961 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99782 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00197 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99934 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47163 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47062 * 119.99500 * 16 14 12 19 19 H 1.48500 * 109.47218 * 239.99607 * 16 14 12 20 20 C 1.46508 * 119.99743 * 185.54765 * 10 8 7 21 21 C 1.52994 * 109.47356 * 265.02332 * 20 10 8 22 22 C 1.52998 * 117.51956 * 116.28232 * 21 20 10 23 23 C 1.52995 * 117.49917 * 184.91358 * 21 20 10 24 24 N 1.28472 * 124.88484 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.46843 * 60.00274 * 1 2 3 26 26 H 1.08993 * 109.47494 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47078 * 300.00248 * 1 2 3 28 28 H 1.08997 * 109.46863 * 59.99500 * 3 2 1 29 29 H 1.09004 * 109.46443 * 299.99738 * 3 2 1 30 30 H 1.08005 * 126.38248 * 0.03638 * 5 4 3 31 31 H 1.07995 * 127.24830 * 180.24188 * 6 5 4 32 32 H 1.09000 * 109.47151 * 35.41316 * 11 10 8 33 33 H 1.09005 * 109.47368 * 155.41281 * 11 10 8 34 34 H 0.97001 * 120.00179 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.46545 * 145.02432 * 20 10 8 36 36 H 1.08996 * 109.46934 * 25.02534 * 20 10 8 37 37 H 1.09003 * 115.55194 * 330.58724 * 21 20 10 38 38 H 1.09004 * 117.50371 * 214.97286 * 22 21 20 39 39 H 1.09009 * 117.49568 * 359.97438 * 22 21 20 40 40 H 1.08998 * 117.50171 * 359.97438 * 23 21 20 41 41 H 1.09000 * 117.49893 * 145.00239 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 6 4.1531 0.0244 0.0016 6 6 5.4714 0.3318 -0.0035 7 6 5.5301 1.7456 0.0010 8 6 6.7527 2.5746 0.0002 9 8 7.8445 2.0475 0.0894 10 7 6.6577 3.9152 -0.0995 11 6 5.3421 4.5595 -0.0845 12 6 4.7626 4.5509 -1.4757 13 1 5.3189 4.1100 -2.2896 14 6 3.5228 5.1068 -1.7094 15 7 2.8456 5.6442 -0.7184 16 14 2.8042 5.0955 -3.4337 17 1 3.7569 4.4363 -4.3626 18 1 1.5199 4.3500 -3.4298 19 1 2.5648 6.4916 -3.8794 20 6 7.8702 4.7284 -0.2228 21 6 8.2931 5.2265 1.1606 22 6 9.6401 4.7455 1.7038 23 6 9.4778 6.1919 1.2321 24 7 4.2864 2.1822 0.0003 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 0.8899 29 1 1.6888 1.8463 -0.8901 30 1 3.7266 -0.9678 0.0016 31 1 6.3032 -0.3570 -0.0079 32 1 4.6790 4.0161 0.5887 33 1 5.4454 5.5887 0.2597 34 1 1.9731 6.0350 -0.8828 35 1 7.6709 5.5818 -0.8710 36 1 8.6701 4.1250 -0.6519 37 1 7.4837 5.3691 1.8766 38 1 9.7170 4.5717 2.7772 39 1 10.2251 4.0736 1.0757 40 1 9.9563 6.4718 0.2936 41 1 9.4479 6.9697 1.9951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597145696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = 30.762051 kcal Electronic energy + Delta-G solvation = -24144.547594 eV Core-core repulsion = 20641.873754 eV Total energy + Delta-G solvation = -3502.673840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.46384 -40.53282 -39.02358 -38.15796 -36.39436 -34.32407 -33.57471 -31.58548 -29.65044 -28.78348 -27.60513 -26.42894 -24.95974 -23.52257 -23.13255 -22.11069 -21.53064 -20.09848 -18.74498 -18.41203 -17.78334 -17.69525 -17.38375 -17.14460 -16.37096 -16.18920 -15.84236 -15.57403 -15.19586 -14.76772 -14.72308 -14.23889 -14.02823 -13.80661 -13.61961 -13.47788 -13.25765 -12.87563 -12.65486 -12.55223 -12.48105 -12.31407 -12.12038 -11.68646 -11.34464 -11.21719 -11.12565 -10.97027 -10.77418 -10.45433 -10.06515 -9.90382 -9.38787 -8.07287 -6.14388 0.77871 1.24943 1.32178 1.33956 1.38986 1.48717 2.28058 2.46848 2.58307 2.72465 2.98010 3.23339 3.65410 3.86219 3.91521 4.00001 4.03301 4.05910 4.16339 4.32937 4.43387 4.47206 4.49642 4.70704 4.79128 4.80874 4.83877 4.86944 4.90101 5.00526 5.03782 5.27146 5.29908 5.34333 5.50727 5.74360 5.80183 5.91171 6.05017 6.23141 6.56787 6.88402 7.14091 7.38904 7.51293 9.00009 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.006114 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.763967 B = 4578.443141 C = 6147.433626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.406 6.406 3 C 0.311 3.689 4 N -0.301 5.301 5 C 0.003 3.997 6 C -0.204 4.204 7 C -0.046 4.046 8 C 0.595 3.405 9 O -0.583 6.583 10 N -0.587 5.587 11 C 0.252 3.748 12 C -0.508 4.508 13 H 0.033 0.967 14 C 0.035 3.965 15 N -0.913 5.913 16 Si 0.936 3.064 17 H -0.283 1.283 18 H -0.274 1.274 19 H -0.278 1.278 20 C 0.150 3.850 21 C -0.186 4.186 22 C -0.171 4.171 23 C -0.152 4.152 24 N -0.214 5.214 25 H 0.054 0.946 26 H 0.121 0.879 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.212 0.788 31 H 0.169 0.831 32 H 0.052 0.948 33 H 0.014 0.986 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 -7.432 3.348 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.324 6.324 3 C 0.152 3.848 4 N -0.091 5.091 5 C -0.139 4.139 6 C -0.232 4.232 7 C -0.206 4.206 8 C 0.383 3.617 9 O -0.464 6.464 10 N -0.316 5.316 11 C 0.132 3.868 12 C -0.547 4.547 13 H 0.051 0.949 14 C -0.165 4.165 15 N -0.553 5.553 16 Si 0.762 3.238 17 H -0.209 1.209 18 H -0.200 1.200 19 H -0.204 1.204 20 C 0.027 3.973 21 C -0.205 4.205 22 C -0.208 4.208 23 C -0.190 4.190 24 N -0.050 5.050 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.228 0.772 31 H 0.187 0.813 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.553 -6.771 3.425 8.006 hybrid contribution -0.364 -0.272 -1.012 1.109 sum -2.917 -7.043 2.413 7.996 Atomic orbital electron populations 1.23092 0.75848 1.05476 1.01839 1.87653 1.23755 1.25184 1.95848 1.22152 0.73425 0.85870 1.03381 1.45920 1.07509 1.04398 1.51254 1.23154 0.91064 0.93610 1.06047 1.21916 0.97504 0.93306 1.10511 1.22035 0.91375 0.94506 1.12685 1.17201 0.86536 0.81976 0.76018 1.90622 1.28016 1.73476 1.54325 1.48114 1.09324 1.05262 1.68866 1.19345 0.78133 0.92096 0.97272 1.21326 1.02559 1.36928 0.93890 0.94869 1.25285 0.96770 0.95136 0.99275 1.70021 1.13689 1.39690 1.31935 0.85867 0.78416 0.77841 0.81633 1.20865 1.19955 1.20387 1.20987 0.86476 0.94313 0.95516 1.22585 0.92823 1.06714 0.98370 1.23002 0.98520 0.97785 1.01457 1.23026 0.99420 0.92688 1.03836 1.74431 0.99996 1.14041 1.16506 0.92733 0.86088 0.92003 0.88950 0.90399 0.77166 0.81346 0.93061 0.96764 0.92794 0.90400 0.90891 0.89380 0.88368 0.89117 0.87603 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -9.57 9.75 -148.98 -1.45 -11.02 16 3 C 0.31 9.32 7.53 127.77 0.96 10.28 16 4 N -0.30 -11.22 3.70 -463.60 -1.71 -12.94 16 5 C 0.00 0.09 10.83 83.54 0.90 1.00 16 6 C -0.20 -7.66 10.81 22.41 0.24 -7.42 16 7 C -0.05 -2.11 6.74 42.46 0.29 -1.82 16 8 C 0.59 28.69 7.62 86.75 0.66 29.35 16 9 O -0.58 -28.76 16.49 -3.93 -0.06 -28.83 16 10 N -0.59 -27.64 2.47 -829.71 -2.05 -29.69 16 11 C 0.25 13.04 4.78 85.64 0.41 13.45 16 12 C -0.51 -27.77 8.05 25.60 0.21 -27.56 16 13 H 0.03 1.91 7.81 -2.91 -0.02 1.89 16 14 C 0.03 1.86 5.46 84.65 0.46 2.32 16 15 N -0.91 -49.98 13.29 21.45 0.28 -49.69 16 16 Si 0.94 42.66 29.54 68.60 2.03 44.69 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 C 0.15 6.00 5.68 86.38 0.49 6.49 16 21 C -0.19 -6.41 6.01 -10.80 -0.06 -6.47 16 22 C -0.17 -5.00 10.18 30.59 0.31 -4.68 16 23 C -0.15 -3.96 10.25 30.59 0.31 -3.65 16 24 N -0.21 -9.75 7.64 -48.17 -0.37 -10.11 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.21 5.07 7.71 -2.91 -0.02 5.05 16 31 H 0.17 5.61 8.06 -2.91 -0.02 5.58 16 32 H 0.05 2.82 5.65 -2.39 -0.01 2.81 16 33 H 0.01 0.78 8.03 -2.38 -0.02 0.76 16 34 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 35 H 0.08 3.07 8.11 -2.38 -0.02 3.05 16 36 H 0.07 2.91 7.09 -2.39 -0.02 2.89 16 37 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 39 H 0.09 2.73 8.03 -2.38 -0.02 2.71 16 40 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -67.96 351.23 4.11 -63.85 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.02 Total: 20.71 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.43 Total: 13.03 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.85 Total: -102.43 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.52 Total: -39.85 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -67.96 4.11 -63.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597145696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.612 kcal (2) G-P(sol) polarization free energy of solvation -67.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds