Wall clock time and date at job start Tue Mar 31 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00099 * 2 1 4 4 N 1.46500 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.35041 * 124.88105 * 359.97438 * 4 3 2 6 6 C 1.35349 * 107.24308 * 179.70464 * 5 4 3 7 7 C 1.41545 * 105.50157 * 0.41296 * 6 5 4 8 8 C 1.47609 * 126.52176 * 179.84006 * 7 6 5 9 9 O 1.21596 * 120.00275 * 5.50668 * 8 7 6 10 10 N 1.34775 * 119.99705 * 185.50479 * 8 7 6 11 11 C 1.36917 * 120.00416 * 5.90132 * 10 8 7 12 12 H 1.07994 * 120.00361 * 238.07979 * 11 10 8 13 13 C 1.39021 * 119.99584 * 58.07375 * 11 10 8 14 14 N 1.31388 * 120.00072 * 357.72391 * 13 11 10 15 15 Si 1.86803 * 119.99667 * 177.72675 * 13 11 10 16 16 H 1.48493 * 109.47436 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46926 * 120.00321 * 15 13 11 18 18 H 1.48506 * 109.47002 * 239.99730 * 15 13 11 19 19 C 1.46497 * 120.00297 * 185.90315 * 10 8 7 20 20 C 1.55233 * 110.58557 * 230.01382 * 19 10 8 21 21 C 1.54892 * 102.59150 * 203.33576 * 20 19 10 22 22 C 1.54266 * 104.31132 * 37.93263 * 21 20 19 23 23 C 1.53877 * 106.59626 * 336.31990 * 22 21 20 24 24 N 1.28473 * 124.87791 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.46821 * 60.00222 * 1 2 3 26 26 H 1.08998 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46880 * 300.00138 * 1 2 3 28 28 H 1.09000 * 109.47219 * 59.99430 * 3 2 1 29 29 H 1.09008 * 109.46824 * 300.00060 * 3 2 1 30 30 H 1.08007 * 126.37698 * 359.97438 * 5 4 3 31 31 H 1.08005 * 127.25012 * 180.27546 * 6 5 4 32 32 H 0.96996 * 119.99699 * 179.97438 * 14 13 11 33 33 H 1.09004 * 110.43192 * 352.59473 * 19 10 8 34 34 H 1.09004 * 110.89945 * 85.04141 * 20 19 10 35 35 H 1.09007 * 110.76248 * 321.56990 * 20 19 10 36 36 H 1.08999 * 110.48319 * 279.18300 * 21 20 19 37 37 H 1.08999 * 110.48629 * 156.67529 * 21 20 19 38 38 H 1.08996 * 110.03520 * 95.61005 * 22 21 20 39 39 H 1.09001 * 110.02691 * 216.99598 * 22 21 20 40 40 H 1.09001 * 110.03053 * 119.28838 * 23 22 21 41 41 H 1.08997 * 110.03407 * 240.66863 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1898 -0.0006 5 6 4.1531 0.0245 -0.0006 6 6 5.4713 0.3314 -0.0079 7 6 5.5304 1.7456 -0.0025 8 6 6.7523 2.5738 -0.0037 9 8 7.8433 2.0477 -0.1109 10 7 6.6586 3.9131 0.1140 11 6 5.4435 4.4959 0.3557 12 1 5.0512 5.2315 -0.3308 13 6 4.7145 4.1406 1.4849 14 7 5.1707 3.2134 2.2964 15 14 3.0865 4.9814 1.8484 16 1 2.7980 5.9807 0.7886 17 1 2.0021 3.9674 1.8804 18 1 3.1650 5.6639 3.1650 19 6 7.8570 4.7456 -0.0166 20 6 7.9652 5.7370 1.1729 21 6 8.8503 6.8672 0.5911 22 6 8.3822 7.0030 -0.8725 23 6 7.7507 5.6540 -1.2589 24 7 4.2863 2.1824 -0.0012 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.7264 -0.9678 0.0002 31 1 6.3030 -0.3576 -0.0142 32 1 4.6622 2.9657 3.0844 33 1 8.7490 4.1219 -0.0753 34 1 8.4514 5.2670 2.0279 35 1 6.9821 6.1191 1.4482 36 1 9.9027 6.5861 0.6306 37 1 8.6846 7.7985 1.1326 38 1 7.6423 7.7990 -0.9556 39 1 9.2338 7.2160 -1.5186 40 1 6.7044 5.7954 -1.5295 41 1 8.2954 5.2121 -2.0932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597276260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:42 Heat of formation + Delta-G solvation = 21.187755 kcal Electronic energy + Delta-G solvation = -24772.059689 eV Core-core repulsion = 21268.970677 eV Total energy + Delta-G solvation = -3503.089013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46295 -38.60353 -37.93229 -36.41214 -34.00546 -31.79699 -31.19335 -29.53805 -27.91928 -27.55166 -26.68782 -25.31284 -24.60207 -21.99173 -20.26320 -19.75332 -19.31195 -19.13576 -17.24277 -16.47921 -16.38266 -16.12158 -15.70287 -15.02395 -14.56653 -14.46910 -14.28629 -14.05552 -13.32624 -13.12762 -12.59617 -12.59252 -12.43868 -12.28609 -12.01133 -11.61604 -11.46697 -11.19122 -11.07848 -10.86636 -10.57526 -10.46645 -10.32588 -10.26675 -10.07871 -9.86540 -9.59971 -9.51735 -8.75099 -8.46744 -7.96786 -7.84233 -7.01801 -6.17195 -4.00995 2.73087 2.90764 3.11671 3.22168 3.27156 3.34982 3.95672 4.22642 4.85028 4.97775 5.01861 5.08223 5.13603 5.24180 5.30014 5.39636 5.39838 5.49167 5.58591 5.73887 5.91887 6.14478 6.24879 6.30071 6.35762 6.39310 6.53448 6.57377 6.58123 6.64396 6.75848 6.82267 6.91313 7.01542 7.12728 7.33106 7.58652 7.65384 7.79688 8.15540 8.79895 9.12140 9.26468 9.79127 10.17811 10.90670 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.005827 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.936946 B = 4804.087667 C = 5616.436494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.398 6.398 3 C 0.311 3.689 4 N -0.316 5.316 5 C -0.027 4.027 6 C -0.203 4.203 7 C 0.061 3.939 8 C 0.596 3.404 9 O -0.607 6.607 10 N -0.439 5.439 11 C -0.324 4.324 12 H 0.076 0.924 13 C 0.087 3.913 14 N -0.859 5.859 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.286 1.286 19 C 0.137 3.863 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.131 4.131 24 N -0.196 5.196 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.145 0.855 32 H 0.263 0.737 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -0.244 -3.545 7.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.316 6.316 3 C 0.151 3.849 4 N -0.106 5.106 5 C -0.168 4.168 6 C -0.232 4.232 7 C -0.102 4.102 8 C 0.385 3.615 9 O -0.491 6.491 10 N -0.158 5.158 11 C -0.453 4.453 12 H 0.093 0.907 13 C -0.122 4.122 14 N -0.494 5.494 15 Si 0.737 3.263 16 H -0.193 1.193 17 H -0.214 1.214 18 H -0.213 1.213 19 C 0.033 3.967 20 C -0.155 4.155 21 C -0.162 4.162 22 C -0.154 4.154 23 C -0.170 4.170 24 N -0.029 5.029 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.181 0.819 31 H 0.163 0.837 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.221 0.222 -3.435 8.000 hybrid contribution -0.885 -0.269 0.599 1.102 sum -8.107 -0.048 -2.835 8.588 Atomic orbital electron populations 1.22742 0.78569 1.03494 1.00689 1.87702 1.21141 1.27103 1.95642 1.22006 0.76394 0.84398 1.02145 1.45674 1.05504 1.04899 1.54474 1.22406 0.92097 0.92324 1.10015 1.21634 0.95514 0.95341 1.10667 1.21586 0.91178 0.91729 1.05694 1.17227 0.85420 0.82333 0.76477 1.90570 1.28037 1.73610 1.56843 1.43001 1.06443 1.03211 1.63100 1.18856 0.94447 1.25146 1.06832 0.90668 1.25337 0.97929 0.94464 0.94457 1.69871 1.37952 1.28345 1.13261 0.86222 0.82970 0.79027 0.78072 1.19267 1.21391 1.21262 1.21835 0.90140 0.91526 0.93202 1.22691 1.00365 0.95113 0.97369 1.22311 0.99185 0.98840 0.95866 1.22025 0.99354 0.97704 0.96331 1.22431 1.01373 0.94924 0.98233 1.74463 1.00370 1.11514 1.16522 0.93358 0.88706 0.93401 0.90597 0.90548 0.81934 0.83686 0.92666 0.90104 0.92605 0.89729 0.92472 0.92502 0.92399 0.92894 0.90963 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.49 16 2 O -0.40 -5.57 9.75 -35.23 -0.34 -5.91 16 3 C 0.31 5.06 7.53 59.85 0.45 5.51 16 4 N -0.32 -6.60 3.70 -66.12 -0.24 -6.84 16 5 C -0.03 -0.54 10.83 -17.17 -0.19 -0.73 16 6 C -0.20 -4.64 10.81 -39.35 -0.43 -5.07 16 7 C 0.06 1.57 5.56 -82.77 -0.46 1.11 16 8 C 0.60 16.55 6.91 -12.44 -0.09 16.46 16 9 O -0.61 -17.73 16.31 5.28 0.09 -17.64 16 10 N -0.44 -11.36 2.46 -106.92 -0.26 -11.62 16 11 C -0.32 -8.31 6.04 -14.99 -0.09 -8.40 16 12 H 0.08 1.92 7.10 -52.49 -0.37 1.54 16 13 C 0.09 2.22 3.21 -17.45 -0.06 2.16 16 14 N -0.86 -23.63 11.14 55.50 0.62 -23.01 16 15 Si 0.91 20.13 29.53 -169.99 -5.02 15.11 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.29 -6.15 6.96 56.52 0.39 -5.75 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.14 3.10 3.25 -66.09 -0.21 2.88 16 20 C -0.12 -2.41 6.39 -24.55 -0.16 -2.56 16 21 C -0.12 -2.02 6.82 -25.07 -0.17 -2.19 16 22 C -0.12 -1.85 6.80 -25.61 -0.17 -2.02 16 23 C -0.13 -2.51 6.43 -25.61 -0.16 -2.67 16 24 N -0.20 -4.77 7.69 33.41 0.26 -4.51 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 29 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 30 H 0.16 2.71 7.71 -52.48 -0.40 2.31 16 31 H 0.15 3.10 8.06 -52.48 -0.42 2.68 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.93 7.00 -51.93 -0.36 1.57 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.88 7.02 -51.93 -0.36 1.51 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.46 6.86 -51.93 -0.36 1.10 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -31.95 334.83 -6.56 -38.51 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.07 Total: 4.90 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.62 Total: 5.98 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.37 Total: -45.99 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.26 Total: -23.55 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.95 -6.56 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.693 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds