Wall clock time and date at job start Tue Mar 31 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00099 * 2 1 4 4 N 1.46500 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.35041 * 124.88105 * 359.97438 * 4 3 2 6 6 C 1.35349 * 107.24308 * 179.70464 * 5 4 3 7 7 C 1.41545 * 105.50157 * 0.41296 * 6 5 4 8 8 C 1.47609 * 126.52176 * 179.84006 * 7 6 5 9 9 O 1.21596 * 120.00275 * 5.50668 * 8 7 6 10 10 N 1.34775 * 119.99705 * 185.50479 * 8 7 6 11 11 C 1.36917 * 120.00416 * 5.90132 * 10 8 7 12 12 H 1.07994 * 120.00361 * 238.07979 * 11 10 8 13 13 C 1.39021 * 119.99584 * 58.07375 * 11 10 8 14 14 N 1.31388 * 120.00072 * 357.72391 * 13 11 10 15 15 Si 1.86803 * 119.99667 * 177.72675 * 13 11 10 16 16 H 1.48493 * 109.47436 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46926 * 120.00321 * 15 13 11 18 18 H 1.48506 * 109.47002 * 239.99730 * 15 13 11 19 19 C 1.46497 * 120.00297 * 185.90315 * 10 8 7 20 20 C 1.55233 * 110.58557 * 230.01382 * 19 10 8 21 21 C 1.54892 * 102.59150 * 203.33576 * 20 19 10 22 22 C 1.54266 * 104.31132 * 37.93263 * 21 20 19 23 23 C 1.53877 * 106.59626 * 336.31990 * 22 21 20 24 24 N 1.28473 * 124.87791 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.46821 * 60.00222 * 1 2 3 26 26 H 1.08998 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46880 * 300.00138 * 1 2 3 28 28 H 1.09000 * 109.47219 * 59.99430 * 3 2 1 29 29 H 1.09008 * 109.46824 * 300.00060 * 3 2 1 30 30 H 1.08007 * 126.37698 * 359.97438 * 5 4 3 31 31 H 1.08005 * 127.25012 * 180.27546 * 6 5 4 32 32 H 0.96996 * 119.99699 * 179.97438 * 14 13 11 33 33 H 1.09004 * 110.43192 * 352.59473 * 19 10 8 34 34 H 1.09004 * 110.89945 * 85.04141 * 20 19 10 35 35 H 1.09007 * 110.76248 * 321.56990 * 20 19 10 36 36 H 1.08999 * 110.48319 * 279.18300 * 21 20 19 37 37 H 1.08999 * 110.48629 * 156.67529 * 21 20 19 38 38 H 1.08996 * 110.03520 * 95.61005 * 22 21 20 39 39 H 1.09001 * 110.02691 * 216.99598 * 22 21 20 40 40 H 1.09001 * 110.03053 * 119.28838 * 23 22 21 41 41 H 1.08997 * 110.03407 * 240.66863 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1898 -0.0006 5 6 4.1531 0.0245 -0.0006 6 6 5.4713 0.3314 -0.0079 7 6 5.5304 1.7456 -0.0025 8 6 6.7523 2.5738 -0.0037 9 8 7.8433 2.0477 -0.1109 10 7 6.6586 3.9131 0.1140 11 6 5.4435 4.4959 0.3557 12 1 5.0512 5.2315 -0.3308 13 6 4.7145 4.1406 1.4849 14 7 5.1707 3.2134 2.2964 15 14 3.0865 4.9814 1.8484 16 1 2.7980 5.9807 0.7886 17 1 2.0021 3.9674 1.8804 18 1 3.1650 5.6639 3.1650 19 6 7.8570 4.7456 -0.0166 20 6 7.9652 5.7370 1.1729 21 6 8.8503 6.8672 0.5911 22 6 8.3822 7.0030 -0.8725 23 6 7.7507 5.6540 -1.2589 24 7 4.2863 2.1824 -0.0012 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.7264 -0.9678 0.0002 31 1 6.3030 -0.3576 -0.0142 32 1 4.6622 2.9657 3.0844 33 1 8.7490 4.1219 -0.0753 34 1 8.4514 5.2670 2.0279 35 1 6.9821 6.1191 1.4482 36 1 9.9027 6.5861 0.6306 37 1 8.6846 7.7985 1.1326 38 1 7.6423 7.7990 -0.9556 39 1 9.2338 7.2160 -1.5186 40 1 6.7044 5.7954 -1.5295 41 1 8.2954 5.2121 -2.0932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597276260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:42 Heat of formation + Delta-G solvation = 0.145860 kcal Electronic energy + Delta-G solvation = -24772.972134 eV Core-core repulsion = 21268.970677 eV Total energy + Delta-G solvation = -3504.001458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.16862 -40.45849 -39.01999 -38.17941 -35.93975 -33.36492 -33.13705 -31.25137 -29.45337 -28.96773 -27.98501 -26.80852 -26.31828 -23.75014 -21.87992 -21.32712 -21.04927 -20.91166 -18.83480 -18.03694 -17.71248 -17.47176 -17.31171 -16.93476 -16.19950 -16.03250 -15.86069 -15.34998 -14.99985 -14.87493 -14.31919 -14.13406 -13.93259 -13.72569 -13.49134 -13.25092 -13.08435 -12.87093 -12.64609 -12.45691 -12.19464 -12.00413 -11.96442 -11.83313 -11.39882 -11.37078 -11.13160 -11.09544 -10.72834 -10.45930 -9.67814 -9.66911 -8.98738 -8.14210 -6.04709 1.07952 1.36322 1.43482 1.46624 1.52773 1.55097 2.37651 2.74870 2.94714 3.14465 3.30757 3.82185 3.90974 3.94959 3.99737 4.14545 4.15729 4.26661 4.45716 4.48896 4.60123 4.69452 4.74651 4.80088 4.80792 4.82121 4.95023 5.03838 5.07755 5.09634 5.19449 5.27047 5.45796 5.52754 5.59578 5.62184 5.67263 5.89747 6.16112 6.20416 6.76356 7.18242 7.43626 7.77763 8.16783 8.93261 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.005827 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.936946 B = 4804.087667 C = 5616.436494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.410 6.410 3 C 0.308 3.692 4 N -0.315 5.315 5 C -0.003 4.003 6 C -0.230 4.230 7 C 0.023 3.977 8 C 0.572 3.428 9 O -0.643 6.643 10 N -0.441 5.441 11 C -0.329 4.329 12 H 0.076 0.924 13 C 0.056 3.944 14 N -0.891 5.891 15 Si 0.961 3.039 16 H -0.256 1.256 17 H -0.273 1.273 18 H -0.289 1.289 19 C 0.122 3.878 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.124 4.124 24 N -0.209 5.209 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.201 0.799 31 H 0.148 0.852 32 H 0.259 0.741 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 0.822 -4.077 10.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.328 6.328 3 C 0.148 3.852 4 N -0.104 5.104 5 C -0.145 4.145 6 C -0.259 4.259 7 C -0.138 4.138 8 C 0.362 3.638 9 O -0.531 6.531 10 N -0.159 5.159 11 C -0.457 4.457 12 H 0.093 0.907 13 C -0.150 4.150 14 N -0.527 5.527 15 Si 0.786 3.214 16 H -0.180 1.180 17 H -0.198 1.198 18 H -0.215 1.215 19 C 0.018 3.982 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.162 4.162 24 N -0.043 5.043 25 H 0.083 0.917 26 H 0.135 0.865 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.218 0.782 31 H 0.165 0.835 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.377 1.325 -3.982 10.273 hybrid contribution -0.317 -0.685 0.758 1.070 sum -9.694 0.640 -3.224 10.236 Atomic orbital electron populations 1.23094 0.75905 1.05407 1.01928 1.87695 1.23798 1.25506 1.95814 1.22217 0.73859 0.85994 1.03092 1.46067 1.07262 1.04509 1.52608 1.22804 0.90946 0.93543 1.07197 1.21837 0.97230 0.94436 1.12378 1.21552 0.91291 0.92851 1.08083 1.17769 0.85947 0.83318 0.76784 1.90502 1.29323 1.74327 1.58900 1.43260 1.07571 1.03134 1.61930 1.18973 0.94826 1.24799 1.07088 0.90669 1.25955 1.00715 0.94442 0.93846 1.70036 1.39262 1.29884 1.13559 0.85411 0.79503 0.78614 0.77860 1.17956 1.19850 1.21522 1.22103 0.88256 0.91730 0.96118 1.22601 1.00277 0.96114 0.96170 1.22278 0.98857 0.97907 0.95996 1.22005 1.00539 0.95669 0.96274 1.22351 1.01055 0.96224 0.96591 1.74270 1.00197 1.12850 1.16998 0.91653 0.86495 0.92616 0.90762 0.88376 0.78191 0.83468 0.93178 0.92425 0.94457 0.91526 0.91126 0.90052 0.90932 0.90052 0.92297 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -10.20 9.75 -148.98 -1.45 -11.65 16 3 C 0.31 9.25 7.53 127.77 0.96 10.21 16 4 N -0.31 -12.77 3.70 -463.58 -1.71 -14.49 16 5 C 0.00 -0.10 10.83 83.53 0.90 0.80 16 6 C -0.23 -10.77 10.81 22.42 0.24 -10.53 16 7 C 0.02 1.24 5.56 42.43 0.24 1.48 16 8 C 0.57 33.37 6.91 86.72 0.60 33.97 16 9 O -0.64 -39.96 16.31 -4.02 -0.07 -40.02 16 10 N -0.44 -23.78 2.46 -610.44 -1.50 -25.29 16 11 C -0.33 -17.18 6.04 84.09 0.51 -16.67 16 12 H 0.08 3.87 7.10 -2.91 -0.02 3.85 16 13 C 0.06 2.87 3.21 84.95 0.27 3.15 16 14 N -0.89 -50.19 11.14 21.68 0.24 -49.95 16 15 Si 0.96 40.51 29.53 68.60 2.03 42.54 16 16 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.27 -10.78 6.96 99.48 0.69 -10.09 16 18 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.12 5.68 3.25 46.19 0.15 5.83 16 20 C -0.11 -4.73 6.39 32.01 0.20 -4.52 16 21 C -0.11 -3.43 6.82 31.67 0.22 -3.22 16 22 C -0.11 -3.12 6.80 31.32 0.21 -2.91 16 23 C -0.12 -4.71 6.43 31.32 0.20 -4.50 16 24 N -0.21 -10.21 7.69 -48.20 -0.37 -10.58 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 2.27 8.00 -2.39 -0.02 2.25 16 29 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.20 6.13 7.71 -2.91 -0.02 6.11 16 31 H 0.15 6.57 8.06 -2.91 -0.02 6.55 16 32 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.06 2.92 7.00 -2.39 -0.02 2.90 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 3.00 7.02 -2.38 -0.02 2.98 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 2.38 6.86 -2.39 -0.02 2.36 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.73 334.83 4.13 -68.61 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 1.01 Total: 26.04 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 5.96 Total: 14.80 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -3.35 Total: -100.31 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -1.52 Total: -51.67 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -72.73 4.13 -68.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.753 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds