Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00451 * 2 1 4 4 O 1.20828 * 119.99625 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00642 * 179.72084 * 3 2 1 6 6 C 1.52998 * 109.46851 * 59.99677 * 5 3 2 7 7 C 1.50702 * 109.47534 * 300.00305 * 6 5 3 8 8 C 1.34945 * 125.48982 * 124.99461 * 7 6 5 9 9 N 1.36665 * 106.72947 * 180.02562 * 8 7 6 10 10 C 1.37573 * 126.88672 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99678 * 354.19102 * 10 9 8 12 12 C 1.39009 * 120.00056 * 174.18608 * 10 9 8 13 13 N 1.31246 * 119.99792 * 5.89216 * 12 10 9 14 14 Si 1.86802 * 120.00062 * 185.88899 * 12 10 9 15 15 H 1.48497 * 109.47280 * 94.97797 * 14 12 10 16 16 H 1.48493 * 109.47252 * 214.98158 * 14 12 10 17 17 H 1.48504 * 109.46880 * 334.98304 * 14 12 10 18 18 N 1.40322 * 106.22623 * 359.97438 * 9 8 7 19 19 N 1.28752 * 108.03226 * 359.73360 * 18 9 8 20 20 C 1.53005 * 109.47022 * 300.00343 * 5 3 2 21 21 C 1.52998 * 109.46763 * 299.99388 * 20 5 3 22 22 C 1.53001 * 109.47454 * 300.00246 * 21 20 5 23 23 C 1.52998 * 109.46983 * 59.99818 * 22 21 20 24 24 C 1.52995 * 109.47307 * 299.99997 * 23 22 21 25 25 H 1.08996 * 109.47547 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47254 * 300.00492 * 1 2 3 27 27 H 1.09003 * 109.46831 * 59.99961 * 1 2 3 28 28 H 1.09000 * 109.47463 * 60.00238 * 6 5 3 29 29 H 1.09004 * 109.47533 * 180.02562 * 6 5 3 30 30 H 1.08001 * 126.63279 * 359.97293 * 8 7 6 31 31 H 0.97002 * 120.00324 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47153 * 59.99458 * 20 5 3 33 33 H 1.08995 * 109.47182 * 179.97438 * 20 5 3 34 34 H 1.09000 * 109.47463 * 180.02562 * 21 20 5 35 35 H 1.09004 * 109.47080 * 60.00015 * 21 20 5 36 36 H 1.09004 * 109.46789 * 299.99948 * 22 21 20 37 37 H 1.08995 * 109.47347 * 180.02562 * 22 21 20 38 38 H 1.09003 * 109.46753 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.47252 * 60.00414 * 23 22 21 40 40 H 1.08995 * 109.47635 * 299.99869 * 24 23 22 41 41 H 1.09006 * 109.47212 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0064 6 6 4.1187 0.5785 -1.2389 7 6 3.6914 -0.8667 -1.2376 8 6 3.0283 -1.4885 -2.2349 9 7 2.8373 -2.7811 -1.8343 10 6 2.2030 -3.7785 -2.5381 11 1 1.7123 -3.5515 -3.4730 12 6 2.1939 -5.0786 -2.0460 13 7 2.6881 -5.3337 -0.8573 14 14 1.4780 -6.4624 -3.0766 15 1 2.5677 -7.1327 -3.8307 16 1 0.8122 -7.4481 -2.1878 17 1 0.4852 -5.9063 -4.0308 18 7 3.4178 -2.8869 -0.5612 19 7 3.9132 -1.7393 -0.2525 20 6 4.1080 0.5840 1.2595 21 6 3.5555 1.2804 2.5048 22 6 3.9893 2.7476 2.5034 23 6 3.4478 3.4383 1.2503 24 6 4.0002 2.7420 0.0050 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.7329 1.0705 -2.1317 29 1 5.2073 0.6351 -1.2342 30 1 2.7093 -1.0493 -3.1686 31 1 2.6814 -6.2408 -0.5136 32 1 3.7989 -0.4612 1.2605 33 1 5.1964 0.6407 1.2639 34 1 3.9417 0.7886 3.3976 35 1 2.4670 1.2234 2.5002 36 1 5.0779 2.8046 2.5080 37 1 3.5962 3.2436 3.3908 38 1 3.7572 4.4835 1.2491 39 1 2.3592 3.3813 1.2457 40 1 5.0887 2.7991 0.0095 41 1 3.6140 3.2339 -0.8878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600972107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = -8.171338 kcal Electronic energy + Delta-G solvation = -25141.086050 eV Core-core repulsion = 21636.723931 eV Total energy + Delta-G solvation = -3504.362118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85811 -39.82570 -37.77687 -35.75397 -34.23411 -33.03771 -31.20237 -30.42724 -29.09603 -27.31658 -26.00506 -24.90521 -22.95346 -22.41179 -21.21265 -20.64996 -19.48461 -19.12415 -17.42175 -16.73818 -16.21197 -15.55893 -15.41189 -14.79444 -14.43508 -14.04093 -13.80231 -13.72160 -13.40663 -13.21304 -13.02492 -12.79732 -12.15959 -12.03754 -11.88486 -11.82777 -11.64789 -11.46466 -11.29824 -11.25553 -11.17715 -10.71810 -10.61646 -10.54966 -10.19431 -10.08930 -9.89882 -9.75492 -9.49114 -9.37328 -8.90034 -8.58281 -7.27139 -6.78205 -4.56317 2.71699 2.85052 2.96956 3.02434 3.28560 3.40425 3.71394 4.13764 4.70844 4.84855 4.90494 4.98493 5.04130 5.28327 5.43936 5.46548 5.53769 5.54705 5.61083 5.70350 5.78966 5.90355 5.91884 5.94832 6.08024 6.12567 6.16709 6.30635 6.32210 6.37621 6.42795 6.52187 6.54216 6.63104 6.82821 7.01446 7.03014 7.08650 7.18834 7.88448 7.99372 8.31934 8.57481 9.20031 10.19059 10.29330 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028012 B = 0.004695 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.347644 B = 5962.926522 C = 6169.422460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.321 6.321 3 C 0.482 3.518 4 O -0.527 6.527 5 C -0.038 4.038 6 C -0.009 4.009 7 C -0.067 4.067 8 C -0.106 4.106 9 N -0.147 5.147 10 C -0.318 4.318 11 H 0.117 0.883 12 C 0.050 3.950 13 N -0.762 5.762 14 Si 0.937 3.063 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.262 1.262 18 N -0.089 5.089 19 N -0.315 5.315 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.133 4.133 24 C -0.097 4.097 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.280 0.720 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 10.063 0.931 10.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.235 6.235 3 C 0.326 3.674 4 O -0.418 6.418 5 C -0.040 4.040 6 C -0.049 4.049 7 C -0.213 4.213 8 C -0.260 4.260 9 N 0.082 4.918 10 C -0.454 4.454 11 H 0.135 0.865 12 C -0.170 4.170 13 N -0.388 5.388 14 Si 0.761 3.239 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.186 1.186 18 N -0.065 5.065 19 N -0.175 5.175 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.170 4.170 24 C -0.135 4.135 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.193 9.199 2.377 9.503 hybrid contribution -0.964 0.008 -1.543 1.819 sum -1.157 9.207 0.835 9.317 Atomic orbital electron populations 1.23154 0.78081 1.03304 1.01259 1.86822 1.21657 1.32356 1.82665 1.23664 0.91899 0.81110 0.70693 1.90508 1.67513 1.36541 1.47204 1.20590 0.87124 0.96960 0.99289 1.19681 1.00286 0.90160 0.94766 1.20330 1.10496 0.95881 0.94604 1.22183 1.13802 0.87445 1.02565 1.46554 1.27969 1.05777 1.11500 1.20054 1.33456 0.86635 1.05236 0.86547 1.25706 0.96066 0.99171 0.96027 1.70143 1.32704 1.22019 1.13949 0.85757 0.79300 0.79513 0.79348 1.19411 1.19885 1.18610 1.82503 1.17716 1.12581 0.93743 1.73751 1.20362 0.98781 1.24591 1.21933 1.00531 1.02944 0.90076 1.21615 1.00279 0.95326 0.98845 1.21572 1.00499 0.95947 0.97629 1.21788 1.03066 0.98202 0.93953 1.21469 1.00544 0.92590 0.98874 0.88596 0.92813 0.92554 0.91555 0.90507 0.83525 0.90891 0.86295 0.91160 0.91806 0.93063 0.92196 0.92734 0.92560 0.89618 0.90900 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.56 101.05 1.07 1.67 16 2 O -0.32 -6.42 8.47 -39.25 -0.33 -6.76 16 3 C 0.48 8.88 5.00 36.00 0.18 9.05 16 4 O -0.53 -9.96 13.40 -18.75 -0.25 -10.21 16 5 C -0.04 -0.62 0.52 -155.66 -0.08 -0.70 16 6 C -0.01 -0.16 4.83 -27.88 -0.13 -0.29 16 7 C -0.07 -1.46 4.24 -83.05 -0.35 -1.81 16 8 C -0.11 -2.43 11.33 -16.57 -0.19 -2.62 16 9 N -0.15 -3.85 3.78 -11.47 -0.04 -3.89 16 10 C -0.32 -8.02 10.30 -14.69 -0.15 -8.17 16 11 H 0.12 2.65 7.84 -52.49 -0.41 2.24 16 12 C 0.05 1.21 5.50 -17.52 -0.10 1.12 16 13 N -0.76 -20.20 11.91 55.50 0.66 -19.54 16 14 Si 0.94 17.97 29.56 -169.99 -5.02 12.95 16 15 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 16 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 18 N -0.09 -2.48 11.75 60.35 0.71 -1.77 16 19 N -0.31 -7.84 9.38 33.16 0.31 -7.53 16 20 C -0.12 -1.97 4.26 -26.73 -0.11 -2.08 16 21 C -0.12 -1.83 5.70 -26.73 -0.15 -1.99 16 22 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 23 C -0.13 -1.79 5.63 -26.73 -0.15 -1.94 16 24 C -0.10 -1.33 4.37 -26.73 -0.12 -1.45 16 25 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 27 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.15 2.93 8.06 -52.49 -0.42 2.50 16 31 H 0.28 6.76 8.31 -40.82 -0.34 6.43 16 32 H 0.12 2.44 5.24 -51.93 -0.27 2.17 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.84 7.22 -51.93 -0.37 0.46 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.35 5.51 -51.93 -0.29 1.06 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -30.20 327.51 -5.45 -35.65 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.97 Total: 7.05 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.45 Total: -10.89 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 1.64 Total: -32.73 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.58 Total: -16.97 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.20 -5.45 -35.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.481 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds