Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00451 * 2 1 4 4 O 1.20828 * 119.99625 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00642 * 179.72084 * 3 2 1 6 6 C 1.52998 * 109.46851 * 59.99677 * 5 3 2 7 7 C 1.50702 * 109.47534 * 300.00305 * 6 5 3 8 8 C 1.34945 * 125.48982 * 124.99461 * 7 6 5 9 9 N 1.36665 * 106.72947 * 180.02562 * 8 7 6 10 10 C 1.37573 * 126.88672 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99678 * 354.19102 * 10 9 8 12 12 C 1.39009 * 120.00056 * 174.18608 * 10 9 8 13 13 N 1.31246 * 119.99792 * 5.89216 * 12 10 9 14 14 Si 1.86802 * 120.00062 * 185.88899 * 12 10 9 15 15 H 1.48497 * 109.47280 * 94.97797 * 14 12 10 16 16 H 1.48493 * 109.47252 * 214.98158 * 14 12 10 17 17 H 1.48504 * 109.46880 * 334.98304 * 14 12 10 18 18 N 1.40322 * 106.22623 * 359.97438 * 9 8 7 19 19 N 1.28752 * 108.03226 * 359.73360 * 18 9 8 20 20 C 1.53005 * 109.47022 * 300.00343 * 5 3 2 21 21 C 1.52998 * 109.46763 * 299.99388 * 20 5 3 22 22 C 1.53001 * 109.47454 * 300.00246 * 21 20 5 23 23 C 1.52998 * 109.46983 * 59.99818 * 22 21 20 24 24 C 1.52995 * 109.47307 * 299.99997 * 23 22 21 25 25 H 1.08996 * 109.47547 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47254 * 300.00492 * 1 2 3 27 27 H 1.09003 * 109.46831 * 59.99961 * 1 2 3 28 28 H 1.09000 * 109.47463 * 60.00238 * 6 5 3 29 29 H 1.09004 * 109.47533 * 180.02562 * 6 5 3 30 30 H 1.08001 * 126.63279 * 359.97293 * 8 7 6 31 31 H 0.97002 * 120.00324 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47153 * 59.99458 * 20 5 3 33 33 H 1.08995 * 109.47182 * 179.97438 * 20 5 3 34 34 H 1.09000 * 109.47463 * 180.02562 * 21 20 5 35 35 H 1.09004 * 109.47080 * 60.00015 * 21 20 5 36 36 H 1.09004 * 109.46789 * 299.99948 * 22 21 20 37 37 H 1.08995 * 109.47347 * 180.02562 * 22 21 20 38 38 H 1.09003 * 109.46753 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.47252 * 60.00414 * 23 22 21 40 40 H 1.08995 * 109.47635 * 299.99869 * 24 23 22 41 41 H 1.09006 * 109.47212 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0064 6 6 4.1187 0.5785 -1.2389 7 6 3.6914 -0.8667 -1.2376 8 6 3.0283 -1.4885 -2.2349 9 7 2.8373 -2.7811 -1.8343 10 6 2.2030 -3.7785 -2.5381 11 1 1.7123 -3.5515 -3.4730 12 6 2.1939 -5.0786 -2.0460 13 7 2.6881 -5.3337 -0.8573 14 14 1.4780 -6.4624 -3.0766 15 1 2.5677 -7.1327 -3.8307 16 1 0.8122 -7.4481 -2.1878 17 1 0.4852 -5.9063 -4.0308 18 7 3.4178 -2.8869 -0.5612 19 7 3.9132 -1.7393 -0.2525 20 6 4.1080 0.5840 1.2595 21 6 3.5555 1.2804 2.5048 22 6 3.9893 2.7476 2.5034 23 6 3.4478 3.4383 1.2503 24 6 4.0002 2.7420 0.0050 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.7329 1.0705 -2.1317 29 1 5.2073 0.6351 -1.2342 30 1 2.7093 -1.0493 -3.1686 31 1 2.6814 -6.2408 -0.5136 32 1 3.7989 -0.4612 1.2605 33 1 5.1964 0.6407 1.2639 34 1 3.9417 0.7886 3.3976 35 1 2.4670 1.2234 2.5002 36 1 5.0779 2.8046 2.5080 37 1 3.5962 3.2436 3.3908 38 1 3.7572 4.4835 1.2491 39 1 2.3592 3.3813 1.2457 40 1 5.0887 2.7991 0.0095 41 1 3.6140 3.2339 -0.8878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600972107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = -25.260243 kcal Electronic energy + Delta-G solvation = -25141.827080 eV Core-core repulsion = 21636.723931 eV Total energy + Delta-G solvation = -3505.103149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.34638 -41.54476 -39.08003 -37.20928 -35.99337 -34.44511 -33.05935 -31.60296 -30.68817 -28.68426 -27.74221 -26.47758 -24.31657 -23.70555 -22.94584 -21.97965 -21.18237 -20.45860 -19.18468 -18.18557 -17.59468 -17.36963 -16.82964 -16.10381 -15.99769 -15.55708 -15.17022 -15.04070 -14.88599 -14.67469 -14.53285 -14.14016 -13.75316 -13.46598 -13.25529 -13.18054 -13.03244 -12.91479 -12.72652 -12.63498 -12.54966 -12.06298 -11.95459 -11.82757 -11.61055 -11.60194 -11.50351 -11.17173 -10.91047 -10.81984 -10.58040 -10.38185 -9.09940 -8.61121 -6.50136 1.21065 1.29473 1.39375 1.57394 1.69868 1.94936 2.10219 2.39276 2.91826 3.00309 3.64110 3.77139 3.83829 4.08489 4.15276 4.23233 4.25775 4.28757 4.32659 4.52683 4.54976 4.57647 4.63898 4.65895 4.72797 4.89572 4.94822 4.98544 5.00824 5.10660 5.23232 5.25196 5.28860 5.32067 5.37449 5.42336 5.49160 5.67319 5.77047 6.07424 6.22716 6.72966 6.89888 7.33293 8.38069 8.43329 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028012 B = 0.004695 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.347644 B = 5962.926522 C = 6169.422460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.350 6.350 3 C 0.477 3.523 4 O -0.534 6.534 5 C -0.035 4.035 6 C -0.011 4.011 7 C -0.054 4.054 8 C -0.117 4.117 9 N -0.163 5.163 10 C -0.348 4.348 11 H 0.136 0.864 12 C 0.004 3.996 13 N -0.811 5.811 14 Si 1.019 2.981 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.245 1.245 18 N -0.145 5.145 19 N -0.326 5.326 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.093 4.093 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.175 0.825 31 H 0.284 0.716 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 11.667 -0.222 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C 0.323 3.677 4 O -0.425 6.425 5 C -0.036 4.036 6 C -0.050 4.050 7 C -0.201 4.201 8 C -0.271 4.271 9 N 0.065 4.935 10 C -0.483 4.483 11 H 0.154 0.846 12 C -0.210 4.210 13 N -0.438 5.438 14 Si 0.837 3.163 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.168 1.168 18 N -0.122 5.122 19 N -0.185 5.185 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.169 4.169 24 C -0.131 4.131 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.192 0.808 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.249 10.828 1.235 10.901 hybrid contribution -1.117 -0.381 -1.159 1.654 sum -0.868 10.447 0.076 10.483 Atomic orbital electron populations 1.23261 0.76955 1.03529 1.02303 1.86806 1.23179 1.33638 1.82910 1.24124 0.92782 0.80516 0.70286 1.90500 1.67948 1.36524 1.47541 1.20675 0.85549 0.98909 0.98489 1.19881 1.01732 0.87194 0.96180 1.21053 1.08481 0.97570 0.93042 1.22855 1.13610 0.86744 1.03905 1.46826 1.28305 1.06983 1.11394 1.20737 1.34169 0.87300 1.06090 0.84641 1.26879 0.95671 1.01582 0.96903 1.70296 1.34527 1.22821 1.16196 0.84579 0.78679 0.75494 0.77538 1.18945 1.19741 1.16773 1.82471 1.20158 1.14239 0.95300 1.73787 1.20650 0.98762 1.25307 1.21817 1.01275 1.00805 0.91320 1.21589 0.98748 0.97243 0.98269 1.21548 1.01684 0.93831 0.97963 1.21760 1.01396 0.99692 0.94040 1.21517 1.02179 0.90095 0.99272 0.88856 0.91692 0.91548 0.89503 0.88323 0.80791 0.90636 0.90337 0.89814 0.91225 0.95354 0.90221 0.91537 0.90125 0.92257 0.88203 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 10.56 113.37 1.20 2.32 16 2 O -0.35 -14.25 8.47 -51.41 -0.44 -14.68 16 3 C 0.48 17.33 5.00 71.23 0.36 17.69 16 4 O -0.53 -19.75 13.40 21.96 0.29 -19.45 16 5 C -0.03 -1.08 0.52 -52.93 -0.03 -1.10 16 6 C -0.01 -0.34 4.83 29.85 0.14 -0.20 16 7 C -0.05 -2.34 4.24 41.55 0.18 -2.17 16 8 C -0.12 -5.38 11.33 83.18 0.94 -4.44 16 9 N -0.16 -8.72 3.78 -190.22 -0.72 -9.44 16 10 C -0.35 -17.75 10.30 83.98 0.86 -16.89 16 11 H 0.14 6.10 7.84 -2.91 -0.02 6.08 16 12 C 0.00 0.21 5.50 84.97 0.47 0.67 16 13 N -0.81 -44.50 11.91 21.66 0.26 -44.24 16 14 Si 1.02 36.66 29.56 68.60 2.03 38.69 16 15 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 16 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.24 -8.03 7.11 99.48 0.71 -7.32 16 18 N -0.15 -8.43 11.75 37.02 0.44 -7.99 16 19 N -0.33 -16.65 9.38 -48.99 -0.46 -17.11 16 20 C -0.11 -3.74 4.26 30.60 0.13 -3.61 16 21 C -0.12 -3.50 5.70 30.59 0.17 -3.32 16 22 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 23 C -0.13 -3.15 5.63 30.59 0.17 -2.97 16 24 C -0.09 -2.25 4.37 30.59 0.13 -2.11 16 25 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 26 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 27 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 28 H 0.09 2.44 8.10 -2.39 -0.02 2.42 16 29 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 30 H 0.17 6.72 8.06 -2.91 -0.02 6.69 16 31 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.08 3.29 5.24 -2.39 -0.01 3.28 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.03 0.93 7.22 -2.38 -0.02 0.91 16 36 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.76 5.51 -2.38 -0.01 1.75 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.66 8.10 -2.38 -0.02 1.64 16 Total: -1.00 -68.24 327.51 7.34 -60.90 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 1.03 Total: 31.84 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.91 Total: -18.51 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -0.49 Total: -78.78 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.14 Total: -34.13 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -68.24 7.34 -60.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.643 kcal (2) G-P(sol) polarization free energy of solvation -68.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds