Wall clock time and date at job start Tue Mar 31 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00547 * 2 1 4 4 H 1.09001 * 109.46793 * 29.99850 * 3 2 1 5 5 C 1.52997 * 109.47588 * 270.00107 * 3 2 1 6 6 C 1.53001 * 109.47556 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46758 * 60.00059 * 6 5 3 8 8 C 1.52999 * 109.46874 * 299.99733 * 7 6 5 9 9 H 1.09000 * 109.47482 * 299.99980 * 8 7 6 10 10 C 1.50707 * 109.46889 * 180.02562 * 8 7 6 11 11 O 1.21302 * 119.99773 * 240.00014 * 10 8 7 12 12 N 1.34775 * 120.00082 * 59.99867 * 10 8 7 13 13 C 1.40596 * 119.99614 * 180.02562 * 12 10 8 14 14 C 1.40644 * 126.08455 * 0.13545 * 13 12 10 15 15 N 1.30916 * 108.38644 * 180.30839 * 14 13 12 16 16 N 1.40070 * 108.40305 * 359.74353 * 15 14 13 17 17 C 1.37325 * 126.06527 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99523 * 174.15928 * 17 16 15 19 19 C 1.38988 * 120.00091 * 354.16521 * 17 16 15 20 20 N 1.31290 * 119.99762 * 5.93062 * 19 17 16 21 21 Si 1.86800 * 119.99778 * 185.93273 * 19 17 16 22 22 H 1.48500 * 109.46892 * 94.97852 * 21 19 17 23 23 H 1.48496 * 109.46997 * 214.97877 * 21 19 17 24 24 H 1.48500 * 109.47375 * 334.97939 * 21 19 17 25 25 C 1.35686 * 126.07711 * 180.02562 * 13 12 10 26 26 C 1.52997 * 109.47276 * 149.99654 * 3 2 1 27 27 H 1.08996 * 109.47377 * 300.00285 * 1 2 3 28 28 H 1.09008 * 109.46954 * 59.99725 * 1 2 3 29 29 H 1.09001 * 109.47759 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47299 * 59.99502 * 5 3 2 31 31 H 1.09000 * 109.46971 * 300.00245 * 5 3 2 32 32 H 1.09001 * 109.46986 * 299.99841 * 6 5 3 33 33 H 1.09003 * 109.46869 * 180.02562 * 6 5 3 34 34 H 1.09009 * 109.46724 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47695 * 59.99851 * 7 6 5 36 36 H 0.96996 * 119.99830 * 0.02562 * 12 10 8 37 37 H 1.07994 * 125.80862 * 0.08907 * 14 13 12 38 38 H 0.97002 * 119.99872 * 179.97438 * 20 19 17 39 39 H 1.07995 * 126.24473 * 359.95704 * 25 13 12 40 40 H 1.09001 * 109.47050 * 60.00354 * 26 3 2 41 41 H 1.09003 * 109.47621 * 300.00128 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2178 1.7713 -1.4424 6 6 2.8396 3.1693 -1.4424 7 6 4.1882 3.1274 -0.7210 8 6 3.9807 2.6615 0.7215 9 1 3.3152 3.3553 1.2352 10 6 5.3090 2.6210 1.4323 11 8 5.7183 1.5764 1.8935 12 7 6.0420 3.7452 1.5555 13 6 7.2814 3.7071 2.2181 14 6 7.8775 2.5716 2.7955 15 7 9.0209 2.9289 3.3236 16 7 9.2021 4.2997 3.1002 17 6 10.2804 5.0488 3.5025 18 1 10.3652 6.0810 3.1963 19 6 11.2627 4.4786 4.3036 20 7 11.2216 3.1957 4.5797 21 14 12.6412 5.5376 4.9874 22 1 12.2857 5.9892 6.3567 23 1 13.8959 4.7449 5.0378 24 1 12.8379 6.7205 4.1115 25 6 8.1162 4.7590 2.4125 26 6 3.3589 1.2631 0.7213 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2570 1.8014 -1.9563 31 1 2.8830 1.0773 -1.9563 32 1 2.1741 3.8630 -0.9287 33 1 2.9870 3.5013 -2.4701 34 1 4.6311 4.1235 -0.7206 35 1 4.8538 2.4337 -1.2346 36 1 5.7145 4.5805 1.1870 37 1 7.4611 1.5752 2.8050 38 1 11.9073 2.7977 5.1385 39 1 7.9498 5.7750 2.0864 40 1 4.0242 0.5691 0.2075 41 1 3.2111 0.9312 1.7490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814679174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:01 Heat of formation + Delta-G solvation = -16.110465 kcal Electronic energy + Delta-G solvation = -23214.922301 eV Core-core repulsion = 19710.215916 eV Total energy + Delta-G solvation = -3504.706385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25168 -39.37160 -38.26913 -36.24102 -34.19402 -33.12610 -31.17191 -30.32020 -30.05426 -27.65356 -26.64202 -25.00302 -23.49950 -22.49797 -21.02113 -20.50386 -19.69881 -19.32046 -17.55113 -17.02882 -16.17558 -15.55123 -15.46008 -15.30589 -15.17670 -14.88082 -14.50957 -14.02972 -13.76926 -13.54992 -13.22806 -13.01763 -12.89001 -12.52287 -12.33722 -11.92904 -11.66441 -11.51838 -11.35675 -11.25711 -11.22131 -10.90879 -10.80437 -10.65085 -10.64343 -10.51321 -10.09626 -9.68377 -9.13771 -9.02924 -8.76412 -8.02517 -6.66078 -6.53883 -4.20287 2.86792 3.05507 3.06918 3.11585 3.39893 3.70614 3.74860 3.93146 4.43016 4.53979 4.56653 4.72787 4.85096 4.91673 4.99090 5.03681 5.08449 5.12868 5.15646 5.25235 5.27049 5.40917 5.44485 5.49500 5.73637 5.80891 5.88755 5.97580 6.02703 6.21512 6.26620 6.32096 6.50728 6.94339 6.99913 7.05567 7.17027 7.28236 7.89073 8.22916 8.33057 8.67156 8.91997 9.41244 9.70419 10.42514 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.046031 B = 0.002791 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.140702 B =10028.877256 C =10468.258919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.142 4.142 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.098 4.098 9 H 0.093 0.907 10 C 0.503 3.497 11 O -0.533 6.533 12 N -0.625 5.625 13 C -0.059 4.059 14 C -0.034 4.034 15 N -0.261 5.261 16 N -0.144 5.144 17 C -0.324 4.324 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.084 4.084 26 C -0.095 4.095 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.395 0.605 37 H 0.176 0.824 38 H 0.274 0.726 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.888 2.052 -10.224 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.180 4.180 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.119 4.119 9 H 0.111 0.889 10 C 0.288 3.712 11 O -0.410 6.410 12 N -0.267 5.267 13 C -0.164 4.164 14 C -0.209 4.209 15 N -0.092 5.092 16 N 0.088 4.912 17 C -0.457 4.457 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.397 5.397 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.235 4.235 26 C -0.133 4.133 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.228 0.772 37 H 0.193 0.807 38 H 0.085 0.915 39 H 0.162 0.838 40 H 0.099 0.901 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.312 0.554 -9.123 18.698 hybrid contribution -0.573 1.537 -0.383 1.684 sum -16.885 2.091 -9.506 19.489 Atomic orbital electron populations 1.22769 0.81453 1.02593 0.99742 1.87938 1.19286 1.27955 1.95028 1.22164 0.95017 0.84238 0.95339 0.92242 1.22061 1.01263 0.97394 0.97272 1.21479 0.96382 0.96453 1.00834 1.21592 0.97823 1.02017 0.93782 1.21206 0.95076 0.98899 0.96752 0.88860 1.20255 0.86012 0.83731 0.81175 1.90602 1.71278 1.30461 1.48689 1.42537 1.18352 1.10616 1.55190 1.17298 0.90230 0.95429 1.13479 1.24116 0.94804 0.99000 1.03016 1.78247 1.16696 0.89990 1.24305 1.44541 1.11075 1.05594 1.29957 1.19859 0.98592 0.95255 1.31946 0.86667 1.25640 0.99064 0.96058 0.96325 1.70225 1.31189 1.09970 1.28268 0.85821 0.79353 0.79476 0.79545 1.19667 1.20118 1.18810 1.21262 0.92592 0.97861 1.11816 1.21337 0.94378 0.95709 1.01891 0.94107 0.94280 0.89782 0.92014 0.90850 0.91740 0.91250 0.91085 0.90898 0.77152 0.80746 0.91499 0.83778 0.90118 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.43 10.35 -35.23 -0.36 -4.80 16 3 C 0.09 0.92 2.61 -26.73 -0.07 0.85 16 4 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 5 C -0.14 -1.25 5.54 -26.73 -0.15 -1.39 16 6 C -0.11 -0.88 5.92 -26.73 -0.16 -1.04 16 7 C -0.11 -1.12 5.10 -26.73 -0.14 -1.26 16 8 C -0.10 -1.17 2.53 -91.74 -0.23 -1.40 16 9 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 10 C 0.50 8.70 7.13 -10.98 -0.08 8.62 16 11 O -0.53 -11.57 13.14 5.54 0.07 -11.50 16 12 N -0.62 -11.01 5.36 -10.00 -0.05 -11.07 16 13 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 14 C -0.03 -0.91 10.85 -17.03 -0.18 -1.09 16 15 N -0.26 -7.72 10.42 30.80 0.32 -7.40 16 16 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 17 C -0.32 -8.67 10.24 -14.81 -0.15 -8.82 16 18 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 19 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16 20 N -0.77 -21.79 11.84 55.49 0.66 -21.14 16 21 Si 0.93 19.10 29.56 -169.99 -5.02 14.08 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 26 C -0.10 -1.21 4.15 -26.71 -0.11 -1.32 16 27 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.04 0.26 7.87 -51.92 -0.41 -0.15 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.62 7.56 -51.92 -0.39 0.23 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 5.33 8.24 -40.82 -0.34 4.99 16 37 H 0.18 4.67 5.92 -52.49 -0.31 4.36 16 38 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.14 2.84 8.06 -52.49 -0.42 2.42 16 40 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 41 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -34.11 337.07 -6.42 -40.53 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.03 Total: 8.79 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.04 Total: -8.54 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.88 Total: -43.65 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.29 Total: -16.29 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.11 -6.42 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.422 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds