Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00547 * 2 1 4 4 H 1.09001 * 109.46793 * 29.99850 * 3 2 1 5 5 C 1.52997 * 109.47588 * 270.00107 * 3 2 1 6 6 C 1.53001 * 109.47556 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46758 * 60.00059 * 6 5 3 8 8 C 1.52999 * 109.46874 * 299.99733 * 7 6 5 9 9 H 1.09000 * 109.47482 * 299.99980 * 8 7 6 10 10 C 1.50707 * 109.46889 * 180.02562 * 8 7 6 11 11 O 1.21302 * 119.99773 * 240.00014 * 10 8 7 12 12 N 1.34775 * 120.00082 * 59.99867 * 10 8 7 13 13 C 1.40596 * 119.99614 * 180.02562 * 12 10 8 14 14 C 1.40644 * 126.08455 * 0.13545 * 13 12 10 15 15 N 1.30916 * 108.38644 * 180.30839 * 14 13 12 16 16 N 1.40070 * 108.40305 * 359.74353 * 15 14 13 17 17 C 1.37325 * 126.06527 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99523 * 174.15928 * 17 16 15 19 19 C 1.38988 * 120.00091 * 354.16521 * 17 16 15 20 20 N 1.31290 * 119.99762 * 5.93062 * 19 17 16 21 21 Si 1.86800 * 119.99778 * 185.93273 * 19 17 16 22 22 H 1.48500 * 109.46892 * 94.97852 * 21 19 17 23 23 H 1.48496 * 109.46997 * 214.97877 * 21 19 17 24 24 H 1.48500 * 109.47375 * 334.97939 * 21 19 17 25 25 C 1.35686 * 126.07711 * 180.02562 * 13 12 10 26 26 C 1.52997 * 109.47276 * 149.99654 * 3 2 1 27 27 H 1.08996 * 109.47377 * 300.00285 * 1 2 3 28 28 H 1.09008 * 109.46954 * 59.99725 * 1 2 3 29 29 H 1.09001 * 109.47759 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47299 * 59.99502 * 5 3 2 31 31 H 1.09000 * 109.46971 * 300.00245 * 5 3 2 32 32 H 1.09001 * 109.46986 * 299.99841 * 6 5 3 33 33 H 1.09003 * 109.46869 * 180.02562 * 6 5 3 34 34 H 1.09009 * 109.46724 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47695 * 59.99851 * 7 6 5 36 36 H 0.96996 * 119.99830 * 0.02562 * 12 10 8 37 37 H 1.07994 * 125.80862 * 0.08907 * 14 13 12 38 38 H 0.97002 * 119.99872 * 179.97438 * 20 19 17 39 39 H 1.07995 * 126.24473 * 359.95704 * 25 13 12 40 40 H 1.09001 * 109.47050 * 60.00354 * 26 3 2 41 41 H 1.09003 * 109.47621 * 300.00128 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2178 1.7713 -1.4424 6 6 2.8396 3.1693 -1.4424 7 6 4.1882 3.1274 -0.7210 8 6 3.9807 2.6615 0.7215 9 1 3.3152 3.3553 1.2352 10 6 5.3090 2.6210 1.4323 11 8 5.7183 1.5764 1.8935 12 7 6.0420 3.7452 1.5555 13 6 7.2814 3.7071 2.2181 14 6 7.8775 2.5716 2.7955 15 7 9.0209 2.9289 3.3236 16 7 9.2021 4.2997 3.1002 17 6 10.2804 5.0488 3.5025 18 1 10.3652 6.0810 3.1963 19 6 11.2627 4.4786 4.3036 20 7 11.2216 3.1957 4.5797 21 14 12.6412 5.5376 4.9874 22 1 12.2857 5.9892 6.3567 23 1 13.8959 4.7449 5.0378 24 1 12.8379 6.7205 4.1115 25 6 8.1162 4.7590 2.4125 26 6 3.3589 1.2631 0.7213 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2570 1.8014 -1.9563 31 1 2.8830 1.0773 -1.9563 32 1 2.1741 3.8630 -0.9287 33 1 2.9870 3.5013 -2.4701 34 1 4.6311 4.1235 -0.7206 35 1 4.8538 2.4337 -1.2346 36 1 5.7145 4.5805 1.1870 37 1 7.4611 1.5752 2.8050 38 1 11.9073 2.7977 5.1385 39 1 7.9498 5.7750 2.0864 40 1 4.0242 0.5691 0.2075 41 1 3.2111 0.9312 1.7490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814679174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = -40.086303 kcal Electronic energy + Delta-G solvation = -23215.961971 eV Core-core repulsion = 19710.215916 eV Total energy + Delta-G solvation = -3505.746055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.80354 -40.83679 -39.46615 -37.14688 -35.93014 -34.95076 -32.38141 -31.91980 -31.07421 -29.44486 -27.29364 -26.87462 -24.70628 -23.28438 -22.83819 -21.77923 -21.17791 -20.72859 -19.30129 -18.25526 -17.42265 -17.11720 -16.88609 -16.46272 -16.17795 -15.97795 -15.70254 -15.43292 -15.13805 -14.86438 -14.68615 -14.49450 -14.08254 -13.51435 -13.42870 -13.30313 -13.16164 -12.93807 -12.80458 -12.60793 -12.32251 -12.06455 -11.99716 -11.81636 -11.61055 -11.44880 -11.43706 -11.00755 -10.81805 -10.62348 -10.31598 -10.09588 -8.51201 -8.46981 -6.23925 1.23064 1.39881 1.54486 1.58383 1.87906 2.05310 2.28864 2.53532 2.82299 2.97926 3.08575 3.64753 3.74468 3.91695 4.11849 4.18053 4.25750 4.37266 4.43963 4.45434 4.49029 4.56342 4.59071 4.64130 4.68245 4.88412 5.01366 5.01774 5.08480 5.11191 5.15255 5.21278 5.25223 5.30246 5.33130 5.47798 5.51811 5.97000 6.32960 6.34791 6.74497 6.79709 7.43612 7.49434 7.69429 8.52794 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.046031 B = 0.002791 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.140702 B =10028.877256 C =10468.258919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.093 3.907 4 H 0.082 0.918 5 C -0.140 4.140 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.082 4.082 9 H 0.129 0.871 10 C 0.498 3.502 11 O -0.582 6.582 12 N -0.614 5.614 13 C -0.043 4.043 14 C -0.064 4.064 15 N -0.312 5.312 16 N -0.169 5.169 17 C -0.354 4.354 18 H 0.142 0.858 19 C -0.008 4.008 20 N -0.827 5.827 21 Si 1.020 2.980 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.241 1.241 25 C -0.080 4.080 26 C -0.095 4.095 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.420 0.580 37 H 0.163 0.837 38 H 0.276 0.724 39 H 0.190 0.810 40 H 0.050 0.950 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.748 5.440 -11.656 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.036 3.964 4 H 0.100 0.900 5 C -0.178 4.178 6 C -0.143 4.143 7 C -0.150 4.150 8 C -0.103 4.103 9 H 0.147 0.853 10 C 0.287 3.713 11 O -0.462 6.462 12 N -0.259 5.259 13 C -0.149 4.149 14 C -0.239 4.239 15 N -0.145 5.145 16 N 0.062 4.938 17 C -0.485 4.485 18 H 0.159 0.841 19 C -0.220 4.220 20 N -0.455 5.455 21 Si 0.839 3.161 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.164 1.164 25 C -0.230 4.230 26 C -0.133 4.133 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.258 0.742 37 H 0.180 0.820 38 H 0.085 0.915 39 H 0.207 0.793 40 H 0.069 0.931 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.233 3.978 -10.602 21.463 hybrid contribution -0.142 0.392 0.003 0.417 sum -18.375 4.370 -10.599 21.658 Atomic orbital electron populations 1.22965 0.79569 1.03593 1.00989 1.87899 1.21458 1.28909 1.95255 1.22161 0.93558 0.84411 0.96265 0.90006 1.22050 1.01981 0.97746 0.95976 1.21465 0.95001 0.96059 1.01764 1.21630 0.99286 1.02310 0.91801 1.21203 0.91815 0.99258 0.98006 0.85336 1.21377 0.87357 0.82609 0.80001 1.90594 1.72701 1.32405 1.50505 1.42485 1.16476 1.12199 1.54755 1.17378 0.91795 0.93826 1.11945 1.24138 0.95312 0.99826 1.04606 1.78143 1.18208 0.91963 1.26156 1.44850 1.12581 1.05133 1.31273 1.20629 0.98936 0.96385 1.32561 0.84058 1.26915 1.01789 0.97260 0.95993 1.70413 1.32726 1.12544 1.29772 0.84566 0.74925 0.77784 0.78845 1.19189 1.20255 1.16382 1.22029 0.91196 0.99749 1.10019 1.21300 0.95830 0.95605 1.00601 0.93198 0.92564 0.89116 0.90107 0.92653 0.89350 0.89597 0.89120 0.92956 0.74222 0.81971 0.91455 0.79274 0.93146 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.42 -9.27 10.35 -148.98 -1.54 -10.81 16 3 C 0.09 1.75 2.61 30.59 0.08 1.83 16 4 H 0.08 1.17 7.79 -2.39 -0.02 1.15 16 5 C -0.14 -2.08 5.54 30.59 0.17 -1.91 16 6 C -0.11 -1.20 5.92 30.59 0.18 -1.01 16 7 C -0.11 -1.89 5.10 30.59 0.16 -1.73 16 8 C -0.08 -1.80 2.53 -11.52 -0.03 -1.83 16 9 H 0.13 2.02 8.14 -2.39 -0.02 2.01 16 10 C 0.50 17.12 7.13 87.66 0.62 17.75 16 11 O -0.58 -26.48 13.14 -3.10 -0.04 -26.52 16 12 N -0.61 -20.73 5.36 -303.92 -1.63 -22.36 16 13 C -0.04 -2.01 6.90 37.73 0.26 -1.75 16 14 C -0.06 -3.58 10.85 85.42 0.93 -2.66 16 15 N -0.31 -19.33 10.42 -56.47 -0.59 -19.92 16 16 N -0.17 -9.52 3.74 -190.01 -0.71 -10.23 16 17 C -0.35 -18.92 10.24 84.01 0.86 -18.05 16 18 H 0.14 6.50 7.84 -2.91 -0.02 6.47 16 19 C -0.01 -0.43 5.50 84.95 0.47 0.03 16 20 N -0.83 -48.65 11.84 21.66 0.26 -48.39 16 21 Si 1.02 38.98 29.56 68.60 2.03 41.01 16 22 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.24 -8.22 7.11 99.48 0.71 -7.51 16 25 C -0.08 -3.69 11.49 83.38 0.96 -2.74 16 26 C -0.10 -2.42 4.15 30.61 0.13 -2.29 16 27 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 28 H 0.06 0.58 7.87 -2.38 -0.02 0.56 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 0.93 7.87 -2.38 -0.02 0.91 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 1.20 7.56 -2.38 -0.02 1.18 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.42 9.88 8.24 -92.71 -0.76 9.11 16 37 H 0.16 9.36 5.92 -2.91 -0.02 9.34 16 38 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.19 6.78 8.06 -2.91 -0.02 6.75 16 40 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 41 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -80.70 337.07 4.06 -76.64 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.27 Total: 33.38 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 6.01 Total: -12.79 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -2.67 Total: -100.90 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.58 Total: -37.34 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -80.70 4.06 -76.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.557 kcal (2) G-P(sol) polarization free energy of solvation -80.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds