Wall clock time and date at job start Tue Mar 31 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00147 * 2 1 4 4 H 1.09008 * 109.47537 * 330.00429 * 3 2 1 5 5 C 1.53004 * 109.46879 * 89.99886 * 3 2 1 6 6 C 1.53003 * 109.47034 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47493 * 300.00267 * 6 5 3 8 8 C 1.53007 * 109.47051 * 60.00179 * 7 6 5 9 9 H 1.09002 * 109.47006 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47181 * 59.99971 * 8 7 6 11 11 O 1.21303 * 119.99788 * 240.00074 * 10 8 7 12 12 N 1.34777 * 120.00066 * 59.99683 * 10 8 7 13 13 C 1.40587 * 119.99664 * 179.97438 * 12 10 8 14 14 C 1.40648 * 126.08657 * 359.96129 * 13 12 10 15 15 N 1.30907 * 108.38580 * 179.75372 * 14 13 12 16 16 N 1.40064 * 108.41108 * 0.44205 * 15 14 13 17 17 C 1.37323 * 126.07433 * 179.81847 * 16 15 14 18 18 H 1.07999 * 120.00320 * 186.11623 * 17 16 15 19 19 C 1.38987 * 119.99703 * 6.11405 * 17 16 15 20 20 N 1.31297 * 120.00011 * 6.75923 * 19 17 16 21 21 Si 1.86798 * 119.99898 * 186.48490 * 19 17 16 22 22 H 1.48508 * 109.47219 * 84.99100 * 21 19 17 23 23 H 1.48502 * 109.47280 * 204.98653 * 21 19 17 24 24 H 1.48500 * 109.47295 * 324.99168 * 21 19 17 25 25 C 1.35693 * 126.07898 * 180.02562 * 13 12 10 26 26 C 1.52993 * 109.47407 * 210.00006 * 3 2 1 27 27 H 1.08996 * 109.46965 * 299.99627 * 1 2 3 28 28 H 1.09004 * 109.47185 * 59.99536 * 1 2 3 29 29 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46802 * 60.00535 * 5 3 2 31 31 H 1.08993 * 109.47690 * 300.00359 * 5 3 2 32 32 H 1.09004 * 109.46911 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.46725 * 60.00689 * 6 5 3 34 34 H 1.08998 * 109.47150 * 300.00391 * 7 6 5 35 35 H 1.08995 * 109.47267 * 180.02562 * 7 6 5 36 36 H 0.97000 * 119.99808 * 0.02562 * 12 10 8 37 37 H 1.07990 * 125.80701 * 0.07279 * 14 13 12 38 38 H 0.97002 * 119.99566 * 179.72280 * 20 19 17 39 39 H 1.07994 * 126.24241 * 359.93106 * 25 13 12 40 40 H 1.09007 * 109.47006 * 60.00705 * 26 3 2 41 41 H 1.08999 * 109.47479 * 300.00203 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4426 6 6 2.8406 3.1687 1.4426 7 6 4.1893 3.1260 0.7216 8 6 3.9819 2.6602 -0.7210 9 1 4.9428 2.6293 -1.2346 10 6 3.0626 3.6200 -1.4315 11 8 2.0124 3.2250 -1.8927 12 7 3.4072 4.9171 -1.5546 13 6 2.5498 5.8123 -2.2179 14 6 1.3092 5.4943 -2.7992 15 7 0.8036 6.5855 -3.3163 16 7 1.7022 7.6370 -3.0956 17 6 1.5338 8.9411 -3.4915 18 1 2.3339 9.6540 -3.3570 19 6 0.3336 9.3436 -4.0653 20 7 -0.6840 8.5150 -4.1083 21 14 0.1659 11.0661 -4.7684 22 1 0.6745 11.0830 -6.1636 23 1 -1.2637 11.4680 -4.7580 24 1 0.9534 12.0166 -3.9429 25 6 2.7725 7.1366 -2.4122 26 6 3.3589 1.2632 -0.7212 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.8830 1.0773 1.9563 31 1 1.2570 1.8013 1.9564 32 1 2.9888 3.5004 2.4703 33 1 2.1757 3.8629 0.9287 34 1 4.8542 2.4318 1.2354 35 1 4.6333 4.1215 0.7220 36 1 4.2471 5.2328 -1.1861 37 1 0.8492 4.5173 -2.8119 38 1 -1.5228 8.7974 -4.5052 39 1 3.6383 7.6932 -2.0851 40 1 3.2111 0.9314 -1.7490 41 1 4.0242 0.5693 -0.2075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814679175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:03 Heat of formation + Delta-G solvation = -35.062931 kcal Electronic energy + Delta-G solvation = -23972.355459 eV Core-core repulsion = 20466.827234 eV Total energy + Delta-G solvation = -3505.528225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92851 -41.01749 -39.12264 -37.03556 -35.91368 -34.95049 -32.34577 -31.93434 -31.01736 -29.44138 -27.34346 -26.87880 -24.59833 -23.31573 -22.81531 -22.30109 -21.25075 -20.44870 -19.17524 -17.82395 -17.57508 -17.30231 -16.83957 -16.67434 -16.08411 -15.94510 -15.78822 -15.25851 -15.11899 -14.87260 -14.81123 -14.33733 -13.90217 -13.51531 -13.30829 -13.24145 -13.10573 -12.96065 -12.90249 -12.80315 -12.58627 -12.09371 -11.98253 -11.83912 -11.68956 -11.42956 -11.31494 -10.98452 -10.81661 -10.42175 -10.23611 -10.08353 -8.50378 -8.47565 -6.23524 1.23983 1.39479 1.56103 1.57401 1.88825 2.07717 2.35673 2.55637 2.80990 2.93361 3.09443 3.76569 3.78081 3.83749 4.14676 4.22801 4.27633 4.40513 4.46072 4.48542 4.51403 4.54936 4.61450 4.69094 4.73469 4.78951 4.99468 5.01376 5.04251 5.10827 5.13714 5.17867 5.26208 5.30823 5.34662 5.42286 5.56772 5.97263 6.29409 6.34366 6.74826 6.83012 7.45584 7.51160 7.70190 8.52145 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027817 B = 0.003547 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.327794 B = 7890.988598 C = 8416.427263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.068 3.932 4 H 0.058 0.942 5 C -0.133 4.133 6 C -0.122 4.122 7 C -0.106 4.106 8 C -0.090 4.090 9 H 0.135 0.865 10 C 0.500 3.500 11 O -0.575 6.575 12 N -0.616 5.616 13 C -0.041 4.041 14 C -0.059 4.059 15 N -0.315 5.315 16 N -0.168 5.168 17 C -0.358 4.358 18 H 0.141 0.859 19 C -0.004 4.004 20 N -0.828 5.828 21 Si 1.018 2.982 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.243 1.243 25 C -0.081 4.081 26 C -0.090 4.090 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.029 0.971 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.419 0.581 37 H 0.164 0.836 38 H 0.276 0.724 39 H 0.188 0.812 40 H 0.054 0.946 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.691 -9.080 11.088 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.322 6.322 3 C 0.011 3.989 4 H 0.076 0.924 5 C -0.170 4.170 6 C -0.160 4.160 7 C -0.143 4.143 8 C -0.112 4.112 9 H 0.153 0.847 10 C 0.289 3.711 11 O -0.455 6.455 12 N -0.261 5.261 13 C -0.147 4.147 14 C -0.234 4.234 15 N -0.147 5.147 16 N 0.062 4.938 17 C -0.488 4.488 18 H 0.158 0.842 19 C -0.216 4.216 20 N -0.456 5.456 21 Si 0.837 3.163 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.166 1.166 25 C -0.231 4.231 26 C -0.128 4.128 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.256 0.744 37 H 0.181 0.819 38 H 0.086 0.914 39 H 0.204 0.796 40 H 0.073 0.927 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.869 -9.046 10.086 16.762 hybrid contribution -0.064 0.570 -0.021 0.574 sum 9.805 -8.476 10.065 16.410 Atomic orbital electron populations 1.22840 0.80684 1.03417 0.99686 1.87760 1.20347 1.28860 1.95233 1.22540 0.96105 0.84108 0.96135 0.92396 1.21977 1.01261 0.97557 0.96230 1.21545 0.96991 0.95727 1.01727 1.21635 0.97315 1.03703 0.91660 1.21390 0.99165 0.92458 0.98141 0.84717 1.21412 0.87482 0.82436 0.79820 1.90528 1.27069 1.77555 1.50325 1.42532 1.21671 1.07141 1.54749 1.17364 0.95579 0.89973 1.11818 1.24093 0.96303 0.98166 1.04854 1.78072 1.16294 0.93829 1.26547 1.44793 1.10645 1.07023 1.31311 1.20583 1.03263 0.82611 1.42382 0.84216 1.26854 0.93802 1.04946 0.95953 1.70369 1.02456 1.37640 1.35159 0.84626 0.78244 0.74543 0.78889 1.19033 1.20236 1.16583 1.22031 0.97801 0.93922 1.09364 1.21315 0.95228 0.95619 1.00667 0.93833 0.95456 0.87758 0.89520 0.92972 0.89436 0.95164 0.87317 0.89431 0.74424 0.81874 0.91436 0.79550 0.92725 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.82 113.37 1.23 1.97 16 2 O -0.40 -11.48 10.35 -148.98 -1.54 -13.02 16 3 C 0.07 1.91 2.32 30.59 0.07 1.98 16 4 H 0.06 2.09 5.16 -2.38 -0.01 2.08 16 5 C -0.13 -2.96 5.54 30.60 0.17 -2.79 16 6 C -0.12 -2.55 5.70 30.59 0.17 -2.37 16 7 C -0.11 -1.61 5.36 30.59 0.16 -1.45 16 8 C -0.09 -1.86 3.01 -11.55 -0.03 -1.89 16 9 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 10 C 0.50 16.22 5.61 87.66 0.49 16.71 16 11 O -0.57 -24.37 10.81 -3.10 -0.03 -24.40 16 12 N -0.62 -20.18 5.36 -303.92 -1.63 -21.81 16 13 C -0.04 -1.87 6.90 37.73 0.26 -1.61 16 14 C -0.06 -3.23 10.85 85.42 0.93 -2.31 16 15 N -0.32 -19.23 10.47 -56.47 -0.59 -19.82 16 16 N -0.17 -9.40 3.73 -190.01 -0.71 -10.11 16 17 C -0.36 -19.05 10.23 84.01 0.86 -18.19 16 18 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 19 C 0.00 -0.22 5.48 84.95 0.47 0.25 16 20 N -0.83 -48.40 11.90 21.66 0.26 -48.14 16 21 Si 1.02 38.86 29.56 68.60 2.03 40.89 16 22 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.24 -8.32 7.11 99.48 0.71 -7.61 16 25 C -0.08 -3.72 11.49 83.38 0.96 -2.76 16 26 C -0.09 -2.12 4.74 30.58 0.14 -1.98 16 27 H 0.04 1.00 7.87 -2.39 -0.02 0.98 16 28 H 0.03 0.76 8.09 -2.38 -0.02 0.74 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.22 7.87 -2.39 -0.02 1.20 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.03 0.86 7.22 -2.39 -0.02 0.84 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.08 7.57 -2.39 -0.02 1.06 16 36 H 0.42 9.69 8.24 -92.71 -0.76 8.92 16 37 H 0.16 9.13 5.92 -2.92 -0.02 9.12 16 38 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.19 6.70 8.06 -2.91 -0.02 6.68 16 40 H 0.05 1.50 8.10 -2.38 -0.02 1.48 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -78.00 330.63 3.94 -74.06 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 0.28 Total: 36.80 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 5.88 Total: -14.44 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -2.67 Total: -99.89 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.58 Total: -37.42 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -78.00 3.94 -74.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.000 kcal (2) G-P(sol) polarization free energy of solvation -78.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds