Wall clock time and date at job start Tue Mar 31 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00341 * 2 1 4 4 H 1.09001 * 109.46823 * 329.99908 * 3 2 1 5 5 C 1.53006 * 109.47245 * 89.99583 * 3 2 1 6 6 C 1.52998 * 109.46802 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47561 * 299.99859 * 6 5 3 8 8 C 1.53005 * 109.46593 * 60.00128 * 7 6 5 9 9 H 1.09001 * 109.47039 * 60.00139 * 8 7 6 10 10 C 1.50699 * 109.46693 * 179.97438 * 8 7 6 11 11 O 1.21302 * 119.99617 * 120.00137 * 10 8 7 12 12 N 1.34778 * 120.00453 * 299.99954 * 10 8 7 13 13 C 1.40595 * 120.00216 * 179.97438 * 12 10 8 14 14 C 1.40647 * 126.08063 * 0.04519 * 13 12 10 15 15 N 1.30909 * 108.38824 * 179.97438 * 14 13 12 16 16 N 1.40065 * 108.40434 * 359.74465 * 15 14 13 17 17 C 1.37319 * 126.07030 * 180.26984 * 16 15 14 18 18 H 1.08003 * 119.99964 * 180.17929 * 17 16 15 19 19 C 1.38985 * 120.00431 * 0.18129 * 17 16 15 20 20 N 1.31304 * 119.99606 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00424 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47066 * 60.00062 * 21 19 17 23 23 H 1.48507 * 109.46885 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46871 * 299.99590 * 21 19 17 25 25 C 1.35678 * 126.08309 * 180.02562 * 13 12 10 26 26 C 1.52992 * 109.47539 * 300.00105 * 8 7 6 27 27 H 1.08998 * 109.47528 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46702 * 300.00223 * 1 2 3 29 29 H 1.08998 * 109.46640 * 60.00025 * 1 2 3 30 30 H 1.09000 * 109.46820 * 300.00098 * 5 3 2 31 31 H 1.09001 * 109.46945 * 60.00399 * 5 3 2 32 32 H 1.09001 * 109.47162 * 60.00388 * 6 5 3 33 33 H 1.09008 * 109.46675 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.46813 * 300.00573 * 7 6 5 35 35 H 1.08992 * 109.47110 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99370 * 0.02562 * 12 10 8 37 37 H 1.08004 * 125.81074 * 359.96709 * 14 13 12 38 38 H 0.96996 * 120.00355 * 180.02562 * 20 19 17 39 39 H 1.08002 * 126.24262 * 0.03169 * 25 13 12 40 40 H 1.08998 * 109.47667 * 180.02562 * 26 8 7 41 41 H 1.08999 * 109.47346 * 300.00460 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1693 1.4424 7 6 4.1881 3.1277 0.7211 8 6 3.9807 2.6617 -0.7214 9 1 3.3151 3.3554 -1.2351 10 6 5.3089 2.6213 -1.4321 11 8 5.7185 1.5767 -1.8932 12 7 6.0418 3.7456 -1.5554 13 6 7.2813 3.7077 -2.2180 14 6 7.8759 2.5730 -2.7983 15 7 9.0226 2.9288 -3.3201 16 7 9.2021 4.3003 -3.0996 17 6 10.2807 5.0494 -3.5012 18 1 10.3193 6.1048 -3.2752 19 6 11.3225 4.4495 -4.1985 20 7 11.2753 3.1665 -4.4738 21 14 12.7900 5.4684 -4.7442 22 1 13.4501 6.0625 -3.5541 23 1 13.7554 4.5996 -5.4644 24 1 12.3307 6.5530 -5.6487 25 6 8.1164 4.7594 -2.4116 26 6 3.3589 1.2638 -0.7214 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.2568 1.8015 1.9563 31 1 2.8830 1.0775 1.9564 32 1 2.1739 3.8630 0.9287 33 1 2.9868 3.5015 2.4702 34 1 4.8536 2.4340 1.2349 35 1 4.6308 4.1237 0.7207 36 1 5.7144 4.5808 -1.1863 37 1 7.4578 1.5772 -2.8113 38 1 12.0025 2.7477 -4.9601 39 1 7.9501 5.7753 -2.0849 40 1 3.2115 0.9316 -1.7490 41 1 4.0244 0.5701 -0.2076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814679176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:07 Heat of formation + Delta-G solvation = -15.879545 kcal Electronic energy + Delta-G solvation = -23215.750929 eV Core-core repulsion = 19711.054557 eV Total energy + Delta-G solvation = -3504.696371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25094 -39.37044 -38.26736 -36.24054 -34.19243 -33.12244 -31.17294 -30.31841 -30.05228 -27.65036 -26.64187 -25.00166 -23.49815 -22.49781 -21.01961 -20.50227 -19.69702 -19.31994 -17.54860 -17.02702 -16.17396 -15.54799 -15.45455 -15.30597 -15.17616 -14.87798 -14.50955 -14.03488 -13.76751 -13.55056 -13.22526 -13.01320 -12.88715 -12.51691 -12.33761 -11.92833 -11.65156 -11.51499 -11.35666 -11.22353 -11.22018 -10.93179 -10.80638 -10.65040 -10.64178 -10.54329 -10.09727 -9.68334 -9.12697 -9.03001 -8.76230 -8.02459 -6.65905 -6.52875 -4.19909 2.87459 3.05911 3.07122 3.10158 3.39991 3.70752 3.75232 3.93234 4.43384 4.54013 4.56777 4.72895 4.85165 4.91749 4.99219 5.04936 5.08531 5.12956 5.15700 5.25368 5.27172 5.40990 5.44560 5.49665 5.73708 5.80980 5.88866 5.97726 6.02793 6.21591 6.26763 6.32250 6.50509 6.93838 6.99962 7.05587 7.17307 7.28554 7.88897 8.23110 8.33261 8.67405 8.92234 9.41264 9.70747 10.43152 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.046137 B = 0.002791 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.741559 B =10029.878130 C =10467.573003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.142 4.142 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.098 4.098 9 H 0.093 0.907 10 C 0.502 3.498 11 O -0.534 6.534 12 N -0.625 5.625 13 C -0.059 4.059 14 C -0.034 4.034 15 N -0.261 5.261 16 N -0.143 5.143 17 C -0.324 4.324 18 H 0.115 0.885 19 C 0.046 3.954 20 N -0.771 5.771 21 Si 0.934 3.066 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.085 4.085 26 C -0.095 4.095 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.395 0.605 37 H 0.176 0.824 38 H 0.275 0.725 39 H 0.145 0.855 40 H 0.077 0.923 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.856 2.050 10.190 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.180 4.180 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.119 4.119 9 H 0.111 0.889 10 C 0.288 3.712 11 O -0.410 6.410 12 N -0.267 5.267 13 C -0.164 4.164 14 C -0.210 4.210 15 N -0.092 5.092 16 N 0.089 4.911 17 C -0.456 4.456 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.397 5.397 21 Si 0.758 3.242 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.236 4.236 26 C -0.133 4.133 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.228 0.772 37 H 0.193 0.807 38 H 0.086 0.914 39 H 0.162 0.838 40 H 0.096 0.904 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.274 0.544 9.095 18.651 hybrid contribution -0.535 1.530 0.449 1.682 sum -16.809 2.074 9.544 19.441 Atomic orbital electron populations 1.22768 0.81452 1.02593 0.99741 1.87940 1.19286 1.27953 1.95029 1.22166 0.95017 0.84234 0.95338 0.92244 1.22061 1.01261 0.97393 0.97271 1.21479 0.96383 0.96454 1.00835 1.21592 0.97822 1.02018 0.93782 1.21194 0.95078 0.98901 0.96754 0.88862 1.20253 0.86013 0.83731 0.81181 1.90602 1.71264 1.30466 1.48703 1.42537 1.18369 1.10619 1.55164 1.17291 0.90225 0.95443 1.13475 1.24118 0.94613 0.99031 1.03208 1.78250 1.16523 0.90080 1.24325 1.44532 1.11116 1.05673 1.29787 1.19805 0.95764 0.93109 1.36925 0.86727 1.25639 0.99391 0.96039 0.96056 1.70212 1.30590 1.09459 1.29463 0.85902 0.79725 0.79309 0.79237 1.19183 1.20150 1.19191 1.21255 0.92918 0.97902 1.11552 1.21325 0.94383 0.95720 1.01895 0.89783 0.94278 0.94107 0.92012 0.90850 0.91740 0.91251 0.90899 0.91083 0.77157 0.80745 0.91434 0.83791 0.90421 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.43 10.35 -35.23 -0.36 -4.80 16 3 C 0.09 0.93 2.61 -26.73 -0.07 0.86 16 4 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 5 C -0.14 -1.25 5.54 -26.73 -0.15 -1.40 16 6 C -0.11 -0.88 5.92 -26.73 -0.16 -1.04 16 7 C -0.11 -1.12 5.10 -26.73 -0.14 -1.26 16 8 C -0.10 -1.17 2.52 -91.77 -0.23 -1.40 16 9 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 10 C 0.50 8.70 7.13 -10.98 -0.08 8.62 16 11 O -0.53 -11.58 13.14 5.54 0.07 -11.51 16 12 N -0.62 -11.03 5.36 -10.00 -0.05 -11.08 16 13 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 14 C -0.03 -0.92 10.85 -17.04 -0.18 -1.10 16 15 N -0.26 -7.71 10.40 30.80 0.32 -7.39 16 16 N -0.14 -3.98 3.74 -11.41 -0.04 -4.02 16 17 C -0.32 -8.65 10.25 -14.82 -0.15 -8.81 16 18 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 19 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.82 11.81 55.50 0.66 -21.17 16 21 Si 0.93 19.09 29.55 -169.99 -5.02 14.06 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.09 -2.03 11.49 -16.39 -0.19 -2.22 16 26 C -0.10 -1.21 4.15 -26.74 -0.11 -1.32 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 29 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 36 H 0.40 5.34 8.24 -40.82 -0.34 5.00 16 37 H 0.18 4.68 5.92 -52.48 -0.31 4.37 16 38 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.14 2.84 8.06 -52.49 -0.42 2.41 16 40 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -34.10 337.02 -6.42 -40.53 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.03 Total: 8.87 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.04 Total: -8.57 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.88 Total: -43.66 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.29 Total: -16.31 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.10 -6.42 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.647 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds