Wall clock time and date at job start Tue Mar 31 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00341 * 2 1 4 4 H 1.09001 * 109.46823 * 329.99908 * 3 2 1 5 5 C 1.53006 * 109.47245 * 89.99583 * 3 2 1 6 6 C 1.52998 * 109.46802 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47561 * 299.99859 * 6 5 3 8 8 C 1.53005 * 109.46593 * 60.00128 * 7 6 5 9 9 H 1.09001 * 109.47039 * 60.00139 * 8 7 6 10 10 C 1.50699 * 109.46693 * 179.97438 * 8 7 6 11 11 O 1.21302 * 119.99617 * 120.00137 * 10 8 7 12 12 N 1.34778 * 120.00453 * 299.99954 * 10 8 7 13 13 C 1.40595 * 120.00216 * 179.97438 * 12 10 8 14 14 C 1.40647 * 126.08063 * 0.04519 * 13 12 10 15 15 N 1.30909 * 108.38824 * 179.97438 * 14 13 12 16 16 N 1.40065 * 108.40434 * 359.74465 * 15 14 13 17 17 C 1.37319 * 126.07030 * 180.26984 * 16 15 14 18 18 H 1.08003 * 119.99964 * 180.17929 * 17 16 15 19 19 C 1.38985 * 120.00431 * 0.18129 * 17 16 15 20 20 N 1.31304 * 119.99606 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00424 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47066 * 60.00062 * 21 19 17 23 23 H 1.48507 * 109.46885 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46871 * 299.99590 * 21 19 17 25 25 C 1.35678 * 126.08309 * 180.02562 * 13 12 10 26 26 C 1.52992 * 109.47539 * 300.00105 * 8 7 6 27 27 H 1.08998 * 109.47528 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46702 * 300.00223 * 1 2 3 29 29 H 1.08998 * 109.46640 * 60.00025 * 1 2 3 30 30 H 1.09000 * 109.46820 * 300.00098 * 5 3 2 31 31 H 1.09001 * 109.46945 * 60.00399 * 5 3 2 32 32 H 1.09001 * 109.47162 * 60.00388 * 6 5 3 33 33 H 1.09008 * 109.46675 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.46813 * 300.00573 * 7 6 5 35 35 H 1.08992 * 109.47110 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99370 * 0.02562 * 12 10 8 37 37 H 1.08004 * 125.81074 * 359.96709 * 14 13 12 38 38 H 0.96996 * 120.00355 * 180.02562 * 20 19 17 39 39 H 1.08002 * 126.24262 * 0.03169 * 25 13 12 40 40 H 1.08998 * 109.47667 * 180.02562 * 26 8 7 41 41 H 1.08999 * 109.47346 * 300.00460 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1693 1.4424 7 6 4.1881 3.1277 0.7211 8 6 3.9807 2.6617 -0.7214 9 1 3.3151 3.3554 -1.2351 10 6 5.3089 2.6213 -1.4321 11 8 5.7185 1.5767 -1.8932 12 7 6.0418 3.7456 -1.5554 13 6 7.2813 3.7077 -2.2180 14 6 7.8759 2.5730 -2.7983 15 7 9.0226 2.9288 -3.3201 16 7 9.2021 4.3003 -3.0996 17 6 10.2807 5.0494 -3.5012 18 1 10.3193 6.1048 -3.2752 19 6 11.3225 4.4495 -4.1985 20 7 11.2753 3.1665 -4.4738 21 14 12.7900 5.4684 -4.7442 22 1 13.4501 6.0625 -3.5541 23 1 13.7554 4.5996 -5.4644 24 1 12.3307 6.5530 -5.6487 25 6 8.1164 4.7594 -2.4116 26 6 3.3589 1.2638 -0.7214 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.2568 1.8015 1.9563 31 1 2.8830 1.0775 1.9564 32 1 2.1739 3.8630 0.9287 33 1 2.9868 3.5015 2.4702 34 1 4.8536 2.4340 1.2349 35 1 4.6308 4.1237 0.7207 36 1 5.7144 4.5808 -1.1863 37 1 7.4578 1.5772 -2.8113 38 1 12.0025 2.7477 -4.9601 39 1 7.9501 5.7753 -2.0849 40 1 3.2115 0.9316 -1.7490 41 1 4.0244 0.5701 -0.2076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814679176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:06 Heat of formation + Delta-G solvation = -39.849207 kcal Electronic energy + Delta-G solvation = -23216.790331 eV Core-core repulsion = 19711.054557 eV Total energy + Delta-G solvation = -3505.735774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80334 -40.83782 -39.46524 -37.14764 -35.92968 -34.94782 -32.38043 -31.92140 -31.07393 -29.44310 -27.29393 -26.87343 -24.70612 -23.28533 -22.83763 -21.77887 -21.17846 -20.72823 -19.29864 -18.25506 -17.41571 -17.11623 -16.88597 -16.46349 -16.17632 -15.97789 -15.70774 -15.43094 -15.14072 -14.85576 -14.68503 -14.49603 -14.08042 -13.49887 -13.42951 -13.30333 -13.15023 -12.87155 -12.85189 -12.60758 -12.32129 -12.13796 -11.99624 -11.80647 -11.61117 -11.44974 -11.43690 -10.98573 -10.81991 -10.62317 -10.31565 -10.09504 -8.51031 -8.46192 -6.23637 1.24129 1.39800 1.55463 1.56552 1.88199 2.05835 2.28982 2.53684 2.82244 2.97904 3.09798 3.64780 3.74394 3.91678 4.11832 4.18024 4.25710 4.37281 4.43994 4.45435 4.49096 4.56326 4.59101 4.63845 4.68196 4.88429 5.00712 5.01732 5.08474 5.11237 5.15244 5.21272 5.25239 5.30338 5.33137 5.47767 5.51923 5.96741 6.33013 6.34747 6.74721 6.79750 7.43568 7.49425 7.69642 8.53169 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.046137 B = 0.002791 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.741559 B =10029.878130 C =10467.573003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.093 3.907 4 H 0.082 0.918 5 C -0.140 4.140 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.082 4.082 9 H 0.129 0.871 10 C 0.498 3.502 11 O -0.582 6.582 12 N -0.614 5.614 13 C -0.043 4.043 14 C -0.064 4.064 15 N -0.312 5.312 16 N -0.169 5.169 17 C -0.354 4.354 18 H 0.142 0.858 19 C -0.009 4.009 20 N -0.827 5.827 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.279 1.279 24 H -0.252 1.252 25 C -0.081 4.081 26 C -0.095 4.095 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.420 0.580 37 H 0.163 0.837 38 H 0.276 0.724 39 H 0.190 0.810 40 H 0.054 0.946 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.676 5.411 11.647 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.036 3.964 4 H 0.100 0.900 5 C -0.178 4.178 6 C -0.143 4.143 7 C -0.150 4.150 8 C -0.103 4.103 9 H 0.147 0.853 10 C 0.287 3.713 11 O -0.462 6.462 12 N -0.259 5.259 13 C -0.149 4.149 14 C -0.239 4.239 15 N -0.144 5.144 16 N 0.062 4.938 17 C -0.485 4.485 18 H 0.160 0.840 19 C -0.220 4.220 20 N -0.455 5.455 21 Si 0.839 3.161 22 H -0.176 1.176 23 H -0.204 1.204 24 H -0.176 1.176 25 C -0.231 4.231 26 C -0.133 4.133 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.258 0.742 37 H 0.180 0.820 38 H 0.085 0.915 39 H 0.207 0.793 40 H 0.073 0.927 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.156 3.941 10.595 21.388 hybrid contribution -0.123 0.399 0.050 0.421 sum -18.279 4.341 10.644 21.593 Atomic orbital electron populations 1.22965 0.79565 1.03593 1.00990 1.87901 1.21461 1.28905 1.95257 1.22162 0.93558 0.84410 0.96260 0.90001 1.22050 1.01980 0.97742 0.95977 1.21465 0.94999 0.96064 1.01763 1.21630 0.99289 1.02305 0.91806 1.21191 0.91816 0.99265 0.98005 0.85332 1.21376 0.87358 0.82606 0.80006 1.90594 1.72689 1.32409 1.50517 1.42486 1.16494 1.12202 1.54731 1.17373 0.91797 0.93847 1.11925 1.24140 0.95105 0.99858 1.04827 1.78146 1.18023 0.92054 1.26174 1.44842 1.12609 1.05214 1.31111 1.20593 0.96055 0.94384 1.37493 0.84045 1.26919 1.02592 0.97107 0.95380 1.70408 1.31973 1.11995 1.31121 0.84639 0.74946 0.77371 0.79151 1.17634 1.20437 1.17628 1.22023 0.91471 0.99783 1.09834 1.21289 0.95834 0.95610 1.00608 0.89115 0.92563 0.93195 0.90101 0.92657 0.89344 0.89600 0.92966 0.89124 0.74228 0.81972 0.91454 0.79293 0.92683 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.42 -9.28 10.35 -148.98 -1.54 -10.82 16 3 C 0.09 1.75 2.61 30.60 0.08 1.83 16 4 H 0.08 1.17 7.79 -2.39 -0.02 1.15 16 5 C -0.14 -2.08 5.54 30.60 0.17 -1.91 16 6 C -0.11 -1.20 5.92 30.59 0.18 -1.02 16 7 C -0.11 -1.89 5.10 30.60 0.16 -1.74 16 8 C -0.08 -1.80 2.52 -11.54 -0.03 -1.83 16 9 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 10 C 0.50 17.14 7.13 87.66 0.62 17.77 16 11 O -0.58 -26.51 13.14 -3.10 -0.04 -26.55 16 12 N -0.61 -20.77 5.36 -303.93 -1.63 -22.40 16 13 C -0.04 -2.01 6.90 37.73 0.26 -1.75 16 14 C -0.06 -3.62 10.85 85.42 0.93 -2.69 16 15 N -0.31 -19.29 10.40 -56.47 -0.59 -19.88 16 16 N -0.17 -9.49 3.74 -190.02 -0.71 -10.20 16 17 C -0.35 -18.93 10.25 84.01 0.86 -18.06 16 18 H 0.14 6.48 7.83 -2.91 -0.02 6.45 16 19 C -0.01 -0.46 5.50 84.95 0.47 0.01 16 20 N -0.83 -48.69 11.81 21.66 0.26 -48.44 16 21 Si 1.02 38.93 29.55 68.60 2.03 40.96 16 22 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 23 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 24 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 25 C -0.08 -3.75 11.49 83.37 0.96 -2.80 16 26 C -0.10 -2.42 4.15 30.59 0.13 -2.30 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 0.58 7.87 -2.39 -0.02 0.56 16 29 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.08 0.93 7.87 -2.39 -0.02 0.91 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.20 7.56 -2.39 -0.02 1.18 16 36 H 0.42 9.90 8.24 -92.71 -0.76 9.14 16 37 H 0.16 9.36 5.92 -2.91 -0.02 9.35 16 38 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 39 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 40 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 41 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 Total: -1.00 -80.70 337.02 4.06 -76.64 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.27 Total: 33.60 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 6.01 Total: -12.91 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -2.67 Total: -100.92 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.58 Total: -37.37 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -80.70 4.06 -76.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.791 kcal (2) G-P(sol) polarization free energy of solvation -80.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds