Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00014 * 2 1 4 4 H 1.09000 * 109.47498 * 30.00247 * 3 2 1 5 5 C 1.53000 * 109.47382 * 269.99819 * 3 2 1 6 6 C 1.52999 * 109.47402 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47123 * 59.99704 * 6 5 3 8 8 C 1.53000 * 109.47223 * 300.00405 * 7 6 5 9 9 H 1.08996 * 109.46829 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47006 * 299.99714 * 8 7 6 11 11 O 1.21301 * 119.99963 * 119.99912 * 10 8 7 12 12 N 1.34773 * 119.99828 * 300.00138 * 10 8 7 13 13 C 1.40602 * 119.99985 * 179.97438 * 12 10 8 14 14 C 1.40649 * 126.07914 * 0.03156 * 13 12 10 15 15 N 1.30910 * 108.38599 * 179.97438 * 14 13 12 16 16 N 1.40062 * 108.40710 * 359.97438 * 15 14 13 17 17 C 1.37324 * 126.06975 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99946 * 174.10873 * 17 16 15 19 19 C 1.38986 * 120.00110 * 354.11301 * 17 16 15 20 20 N 1.31300 * 119.99581 * 5.91634 * 19 17 16 21 21 Si 1.86789 * 120.00082 * 185.91563 * 19 17 16 22 22 H 1.48500 * 109.47429 * 94.97717 * 21 19 17 23 23 H 1.48502 * 109.47362 * 214.97835 * 21 19 17 24 24 H 1.48502 * 109.47379 * 334.98073 * 21 19 17 25 25 C 1.35675 * 126.08269 * 179.71513 * 13 12 10 26 26 C 1.52999 * 109.47222 * 60.00113 * 8 7 6 27 27 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46669 * 60.00123 * 1 2 3 29 29 H 1.08999 * 109.47423 * 300.00283 * 1 2 3 30 30 H 1.09004 * 109.47076 * 299.99714 * 5 3 2 31 31 H 1.08996 * 109.46829 * 59.99773 * 5 3 2 32 32 H 1.08997 * 109.47540 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.46953 * 300.00436 * 6 5 3 34 34 H 1.09005 * 109.46724 * 60.00708 * 7 6 5 35 35 H 1.08994 * 109.47345 * 179.97438 * 7 6 5 36 36 H 0.97006 * 120.00541 * 0.02562 * 12 10 8 37 37 H 1.08004 * 125.80514 * 359.95313 * 14 13 12 38 38 H 0.96998 * 119.99414 * 180.02562 * 20 19 17 39 39 H 1.07996 * 126.24681 * 0.02562 * 25 13 12 40 40 H 1.08994 * 109.46870 * 180.02562 * 26 8 7 41 41 H 1.08996 * 109.47326 * 59.99446 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 2.8406 3.1688 -1.4425 7 6 4.1893 3.1260 -0.7213 8 6 3.9818 2.6601 0.7212 9 1 4.9426 2.6300 1.2350 10 6 3.0625 3.6198 1.4317 11 8 2.0124 3.2249 1.8928 12 7 3.4072 4.9169 1.5549 13 6 2.5493 5.8124 2.2174 14 6 1.3081 5.4946 2.7974 15 7 0.8049 6.5848 3.3191 16 7 1.7013 7.6372 3.0943 17 6 1.5329 8.9413 3.4904 18 1 2.3304 9.6558 3.3491 19 6 0.3364 9.3415 4.0733 20 7 -0.5882 8.4518 4.3516 21 14 0.0436 11.1452 4.4607 22 1 -0.6997 11.7777 3.3415 23 1 -0.7506 11.2606 5.7102 24 1 1.3485 11.8315 4.6385 25 6 2.7743 7.1356 2.4160 26 6 3.3590 1.2626 0.7211 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 0.5139 0.8899 30 1 2.8830 1.0775 -1.9563 31 1 1.2569 1.8014 -1.9563 32 1 2.9888 3.5006 -2.4701 33 1 2.1757 3.8629 -0.9285 34 1 4.8543 2.4319 -1.2353 35 1 4.6333 4.1214 -0.7217 36 1 4.2469 5.2328 1.1859 37 1 0.8481 4.5175 2.8100 38 1 -1.4234 8.7312 4.7580 39 1 3.6429 7.6909 2.0943 40 1 3.2108 0.9309 1.7487 41 1 4.0239 0.5685 0.2072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814679177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = -11.697308 kcal Electronic energy + Delta-G solvation = -23971.574720 eV Core-core repulsion = 20467.059704 eV Total energy + Delta-G solvation = -3504.515016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50943 -39.35263 -37.86667 -35.95042 -34.24996 -33.15930 -31.06570 -30.24977 -29.93368 -27.67556 -26.33911 -25.01590 -23.35575 -22.35934 -21.20972 -20.83720 -19.49934 -19.07462 -17.42255 -16.75592 -16.16604 -15.67731 -15.43974 -15.22404 -15.02788 -14.63824 -14.34263 -13.97813 -13.65625 -13.45930 -13.14684 -12.93871 -12.87092 -12.25713 -12.14067 -11.92873 -11.66516 -11.62299 -11.41634 -11.28273 -11.00966 -10.95184 -10.74430 -10.53552 -10.52030 -10.37625 -10.02048 -9.35807 -9.15063 -8.92693 -8.77455 -8.05478 -6.68826 -6.56431 -4.22917 2.83731 3.03633 3.04847 3.09959 3.61609 3.67968 3.82999 3.88749 4.42028 4.66407 4.71712 4.73545 4.95457 5.01083 5.10630 5.18848 5.28519 5.38984 5.45842 5.48602 5.51712 5.57458 5.67550 5.74432 5.82655 5.95817 6.02827 6.14614 6.14786 6.24382 6.30426 6.38808 6.48227 6.91997 6.96525 7.14571 7.25486 7.36624 7.86376 8.19587 8.30297 8.64415 8.88853 9.38383 9.67562 10.39933 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.003553 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.176850 B = 7879.486054 C = 8390.394136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.073 3.927 4 H 0.098 0.902 5 C -0.138 4.138 6 C -0.122 4.122 7 C -0.111 4.111 8 C -0.103 4.103 9 H 0.099 0.901 10 C 0.504 3.496 11 O -0.534 6.534 12 N -0.624 5.624 13 C -0.059 4.059 14 C -0.033 4.033 15 N -0.262 5.262 16 N -0.143 5.143 17 C -0.325 4.325 18 H 0.116 0.884 19 C 0.047 3.953 20 N -0.770 5.770 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.084 4.084 26 C -0.091 4.091 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.175 0.825 38 H 0.274 0.726 39 H 0.144 0.856 40 H 0.075 0.925 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -9.353 -9.926 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.016 3.984 4 H 0.116 0.884 5 C -0.176 4.176 6 C -0.159 4.159 7 C -0.149 4.149 8 C -0.125 4.125 9 H 0.117 0.883 10 C 0.290 3.710 11 O -0.412 6.412 12 N -0.265 5.265 13 C -0.165 4.165 14 C -0.209 4.209 15 N -0.093 5.093 16 N 0.089 4.911 17 C -0.457 4.457 18 H 0.133 0.867 19 C -0.170 4.170 20 N -0.397 5.397 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.235 4.235 26 C -0.128 4.128 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.229 0.771 37 H 0.192 0.808 38 H 0.085 0.915 39 H 0.162 0.838 40 H 0.094 0.906 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.290 -9.311 -8.844 14.300 hybrid contribution 0.908 0.904 -0.543 1.392 sum 7.199 -8.408 -9.388 14.513 Atomic orbital electron populations 1.22731 0.81441 1.01973 1.00228 1.87795 1.19432 1.28631 1.95114 1.22538 0.96052 0.84991 0.94831 0.88448 1.22019 1.00967 0.96763 0.97830 1.21531 0.96628 0.97129 1.00662 1.21563 0.97964 1.01686 0.93643 1.21319 0.99424 0.94859 0.96867 0.88314 1.20320 0.87468 0.82310 0.80894 1.90515 1.24906 1.76869 1.48939 1.42567 1.21472 1.07522 1.54976 1.17297 0.96282 0.89296 1.13590 1.24088 0.94488 0.99007 1.03310 1.78240 1.14667 0.92405 1.23970 1.44535 1.09859 1.06798 1.29912 1.19870 1.02420 0.81862 1.41544 0.86660 1.25631 0.95221 1.00454 0.95703 1.70227 1.05338 1.33620 1.30487 0.85823 0.79244 0.80680 0.78471 1.19659 1.20104 1.18795 1.21268 0.97288 0.93505 1.11440 1.21276 0.95430 0.94423 1.01717 0.90211 0.94493 0.93630 0.91644 0.92171 0.91519 0.91293 0.90816 0.91260 0.77137 0.80820 0.91506 0.83803 0.90631 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.82 101.05 1.09 1.49 16 2 O -0.39 -5.60 10.35 -35.23 -0.36 -5.96 16 3 C 0.07 1.02 2.32 -26.73 -0.06 0.96 16 4 H 0.10 1.65 5.16 -51.93 -0.27 1.38 16 5 C -0.14 -1.65 5.54 -26.73 -0.15 -1.80 16 6 C -0.12 -1.40 5.70 -26.73 -0.15 -1.55 16 7 C -0.11 -1.09 5.35 -26.73 -0.14 -1.23 16 8 C -0.10 -1.22 3.01 -91.77 -0.28 -1.49 16 9 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.50 8.35 5.61 -10.99 -0.06 8.29 16 11 O -0.53 -10.85 10.81 5.54 0.06 -10.79 16 12 N -0.62 -10.67 5.36 -10.00 -0.05 -10.73 16 13 C -0.06 -1.34 6.90 -83.84 -0.58 -1.92 16 14 C -0.03 -0.87 10.85 -17.04 -0.18 -1.06 16 15 N -0.26 -7.60 10.42 30.80 0.32 -7.28 16 16 N -0.14 -3.92 3.74 -11.41 -0.04 -3.97 16 17 C -0.32 -8.60 10.24 -14.81 -0.15 -8.75 16 18 H 0.12 2.73 7.84 -52.48 -0.41 2.32 16 19 C 0.05 1.22 5.50 -17.50 -0.10 1.12 16 20 N -0.77 -21.56 11.84 55.49 0.66 -20.90 16 21 Si 0.93 18.92 29.55 -169.99 -5.02 13.89 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 C -0.08 -1.96 11.49 -16.39 -0.19 -2.15 16 26 C -0.09 -1.15 4.74 -26.73 -0.13 -1.27 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.41 7.87 -51.92 -0.41 0.00 16 29 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.99 7.22 -51.93 -0.37 0.62 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.61 7.57 -51.93 -0.39 0.21 16 36 H 0.40 5.24 8.24 -40.82 -0.34 4.90 16 37 H 0.18 4.50 5.92 -52.48 -0.31 4.19 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.14 2.80 8.06 -52.49 -0.42 2.38 16 40 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -32.86 330.54 -6.39 -39.25 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.85 Total: 10.87 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.08 Total: -9.37 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.88 Total: -42.87 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.30 Total: -16.75 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.86 -6.39 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.554 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds