Wall clock time and date at job start Tue Mar 31 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00014 * 2 1 4 4 H 1.09000 * 109.47498 * 30.00247 * 3 2 1 5 5 C 1.53000 * 109.47382 * 269.99819 * 3 2 1 6 6 C 1.52999 * 109.47402 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47123 * 59.99704 * 6 5 3 8 8 C 1.53000 * 109.47223 * 300.00405 * 7 6 5 9 9 H 1.08996 * 109.46829 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47006 * 299.99714 * 8 7 6 11 11 O 1.21301 * 119.99963 * 119.99912 * 10 8 7 12 12 N 1.34773 * 119.99828 * 300.00138 * 10 8 7 13 13 C 1.40602 * 119.99985 * 179.97438 * 12 10 8 14 14 C 1.40649 * 126.07914 * 0.03156 * 13 12 10 15 15 N 1.30910 * 108.38599 * 179.97438 * 14 13 12 16 16 N 1.40062 * 108.40710 * 359.97438 * 15 14 13 17 17 C 1.37324 * 126.06975 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99946 * 174.10873 * 17 16 15 19 19 C 1.38986 * 120.00110 * 354.11301 * 17 16 15 20 20 N 1.31300 * 119.99581 * 5.91634 * 19 17 16 21 21 Si 1.86789 * 120.00082 * 185.91563 * 19 17 16 22 22 H 1.48500 * 109.47429 * 94.97717 * 21 19 17 23 23 H 1.48502 * 109.47362 * 214.97835 * 21 19 17 24 24 H 1.48502 * 109.47379 * 334.98073 * 21 19 17 25 25 C 1.35675 * 126.08269 * 179.71513 * 13 12 10 26 26 C 1.52999 * 109.47222 * 60.00113 * 8 7 6 27 27 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46669 * 60.00123 * 1 2 3 29 29 H 1.08999 * 109.47423 * 300.00283 * 1 2 3 30 30 H 1.09004 * 109.47076 * 299.99714 * 5 3 2 31 31 H 1.08996 * 109.46829 * 59.99773 * 5 3 2 32 32 H 1.08997 * 109.47540 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.46953 * 300.00436 * 6 5 3 34 34 H 1.09005 * 109.46724 * 60.00708 * 7 6 5 35 35 H 1.08994 * 109.47345 * 179.97438 * 7 6 5 36 36 H 0.97006 * 120.00541 * 0.02562 * 12 10 8 37 37 H 1.08004 * 125.80514 * 359.95313 * 14 13 12 38 38 H 0.96998 * 119.99414 * 180.02562 * 20 19 17 39 39 H 1.07996 * 126.24681 * 0.02562 * 25 13 12 40 40 H 1.08994 * 109.46870 * 180.02562 * 26 8 7 41 41 H 1.08996 * 109.47326 * 59.99446 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 2.8406 3.1688 -1.4425 7 6 4.1893 3.1260 -0.7213 8 6 3.9818 2.6601 0.7212 9 1 4.9426 2.6300 1.2350 10 6 3.0625 3.6198 1.4317 11 8 2.0124 3.2249 1.8928 12 7 3.4072 4.9169 1.5549 13 6 2.5493 5.8124 2.2174 14 6 1.3081 5.4946 2.7974 15 7 0.8049 6.5848 3.3191 16 7 1.7013 7.6372 3.0943 17 6 1.5329 8.9413 3.4904 18 1 2.3304 9.6558 3.3491 19 6 0.3364 9.3415 4.0733 20 7 -0.5882 8.4518 4.3516 21 14 0.0436 11.1452 4.4607 22 1 -0.6997 11.7777 3.3415 23 1 -0.7506 11.2606 5.7102 24 1 1.3485 11.8315 4.6385 25 6 2.7743 7.1356 2.4160 26 6 3.3590 1.2626 0.7211 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 0.5139 0.8899 30 1 2.8830 1.0775 -1.9563 31 1 1.2569 1.8014 -1.9563 32 1 2.9888 3.5006 -2.4701 33 1 2.1757 3.8629 -0.9285 34 1 4.8543 2.4319 -1.2353 35 1 4.6333 4.1214 -0.7217 36 1 4.2469 5.2328 1.1859 37 1 0.8481 4.5175 2.8100 38 1 -1.4234 8.7312 4.7580 39 1 3.6429 7.6909 2.0943 40 1 3.2108 0.9309 1.7487 41 1 4.0239 0.5685 0.2072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814679177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:09 Heat of formation + Delta-G solvation = -34.591698 kcal Electronic energy + Delta-G solvation = -23972.567495 eV Core-core repulsion = 20467.059704 eV Total energy + Delta-G solvation = -3505.507791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92662 -41.01534 -39.12270 -37.03452 -35.91345 -34.94888 -32.34368 -31.93203 -31.01661 -29.43768 -27.34262 -26.87930 -24.59847 -23.31550 -22.81176 -22.29975 -21.24726 -20.44937 -19.17456 -17.82403 -17.57276 -17.30125 -16.83783 -16.67571 -16.08076 -15.95598 -15.76249 -15.26775 -15.11697 -14.87662 -14.80707 -14.33882 -13.89981 -13.51942 -13.30928 -13.23002 -13.11856 -12.96523 -12.91480 -12.77940 -12.58834 -12.07214 -11.98426 -11.84260 -11.69221 -11.43050 -11.31519 -10.97954 -10.80345 -10.42159 -10.23392 -10.08927 -8.49534 -8.46912 -6.23778 1.23915 1.39499 1.56370 1.57732 1.89416 2.07266 2.35697 2.55751 2.81082 2.94400 3.08494 3.76657 3.78056 3.83777 4.14749 4.22863 4.27585 4.40518 4.46201 4.48547 4.51475 4.54909 4.61676 4.69206 4.73492 4.78928 4.99555 5.01515 5.04330 5.10991 5.13747 5.17936 5.26204 5.30965 5.34719 5.42362 5.56913 5.97167 6.29467 6.34367 6.75258 6.83077 7.45710 7.51353 7.70675 8.52504 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.003553 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.176850 B = 7879.486054 C = 8390.394136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.068 3.932 4 H 0.058 0.942 5 C -0.132 4.132 6 C -0.122 4.122 7 C -0.106 4.106 8 C -0.090 4.090 9 H 0.135 0.865 10 C 0.500 3.500 11 O -0.575 6.575 12 N -0.616 5.616 13 C -0.041 4.041 14 C -0.061 4.061 15 N -0.313 5.313 16 N -0.170 5.170 17 C -0.356 4.356 18 H 0.141 0.859 19 C -0.006 4.006 20 N -0.827 5.827 21 Si 1.019 2.981 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.242 1.242 25 C -0.081 4.081 26 C -0.090 4.090 27 H 0.104 0.896 28 H 0.043 0.957 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.419 0.581 37 H 0.164 0.836 38 H 0.275 0.725 39 H 0.188 0.812 40 H 0.054 0.946 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.413 -8.879 -11.800 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.322 6.322 3 C 0.011 3.989 4 H 0.076 0.924 5 C -0.170 4.170 6 C -0.160 4.160 7 C -0.143 4.143 8 C -0.112 4.112 9 H 0.152 0.848 10 C 0.288 3.712 11 O -0.455 6.455 12 N -0.261 5.261 13 C -0.147 4.147 14 C -0.236 4.236 15 N -0.145 5.145 16 N 0.061 4.939 17 C -0.487 4.487 18 H 0.158 0.842 19 C -0.217 4.217 20 N -0.455 5.455 21 Si 0.837 3.163 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.165 1.165 25 C -0.232 4.232 26 C -0.128 4.128 27 H 0.122 0.878 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.256 0.744 37 H 0.181 0.819 38 H 0.085 0.915 39 H 0.205 0.795 40 H 0.073 0.927 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.614 -8.858 -10.751 16.926 hybrid contribution -0.088 0.579 -0.027 0.586 sum 9.526 -8.279 -10.779 16.597 Atomic orbital electron populations 1.22841 0.80685 1.03415 0.99687 1.87760 1.20350 1.28866 1.95233 1.22544 0.96094 0.84109 0.96146 0.92385 1.21977 1.01266 0.97565 0.96215 1.21545 0.96980 0.95722 1.01730 1.21637 0.97331 1.03703 0.91646 1.21394 0.99151 0.92461 0.98152 0.84751 1.21411 0.87480 0.82442 0.79819 1.90528 1.27075 1.77554 1.50319 1.42536 1.21659 1.07124 1.54780 1.17367 0.95471 0.90010 1.11844 1.24112 0.96435 0.98245 1.04790 1.78130 1.16820 0.93765 1.25829 1.44821 1.10734 1.06962 1.31369 1.20616 1.03743 0.82141 1.42180 0.84201 1.26871 0.94435 1.05675 0.94749 1.70413 1.06175 1.36515 1.32363 0.84585 0.79839 0.73908 0.77920 1.19206 1.20218 1.16469 1.22018 0.97368 0.93885 1.09883 1.21324 0.95238 0.95610 1.00657 0.87765 0.93826 0.95454 0.89527 0.92956 0.89418 0.95142 0.87327 0.89422 0.74424 0.81906 0.91494 0.79539 0.92750 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.82 113.37 1.23 1.97 16 2 O -0.40 -11.48 10.35 -148.98 -1.54 -13.02 16 3 C 0.07 1.90 2.32 30.60 0.07 1.97 16 4 H 0.06 2.09 5.16 -2.39 -0.01 2.08 16 5 C -0.13 -2.95 5.54 30.59 0.17 -2.78 16 6 C -0.12 -2.53 5.70 30.60 0.17 -2.35 16 7 C -0.11 -1.61 5.35 30.60 0.16 -1.44 16 8 C -0.09 -1.86 3.01 -11.54 -0.03 -1.90 16 9 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 10 C 0.50 16.23 5.61 87.66 0.49 16.72 16 11 O -0.57 -24.38 10.81 -3.10 -0.03 -24.42 16 12 N -0.62 -20.18 5.36 -303.93 -1.63 -21.81 16 13 C -0.04 -1.85 6.90 37.73 0.26 -1.59 16 14 C -0.06 -3.33 10.85 85.42 0.93 -2.40 16 15 N -0.31 -19.13 10.42 -56.46 -0.59 -19.72 16 16 N -0.17 -9.46 3.74 -190.01 -0.71 -10.17 16 17 C -0.36 -18.96 10.24 84.01 0.86 -18.09 16 18 H 0.14 6.44 7.84 -2.91 -0.02 6.42 16 19 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 20 N -0.83 -48.32 11.84 21.66 0.26 -48.07 16 21 Si 1.02 38.83 29.55 68.60 2.03 40.86 16 22 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 25 C -0.08 -3.74 11.49 83.37 0.96 -2.78 16 26 C -0.09 -2.12 4.74 30.60 0.15 -1.98 16 27 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.04 1.00 7.87 -2.38 -0.02 0.98 16 29 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 30 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.05 1.22 7.87 -2.39 -0.02 1.20 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 0.86 7.22 -2.39 -0.02 0.84 16 34 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 1.07 7.57 -2.39 -0.02 1.06 16 36 H 0.42 9.68 8.24 -92.70 -0.76 8.92 16 37 H 0.16 9.13 5.92 -2.91 -0.02 9.11 16 38 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.19 6.69 8.06 -2.91 -0.02 6.67 16 40 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -78.06 330.54 3.94 -74.11 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: 0.28 Total: 36.72 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.88 Total: -14.50 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -2.67 Total: -99.76 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -1.57 Total: -37.43 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -78.06 3.94 -74.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.521 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds