Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34727 * 116.99935 * 2 1 4 4 O 1.21490 * 120.00030 * 0.02562 * 3 2 1 5 5 C 1.47586 * 119.99547 * 180.02562 * 3 2 1 6 6 C 1.41683 * 126.49778 * 180.02562 * 5 3 2 7 7 C 1.34685 * 105.33738 * 179.97438 * 6 5 3 8 8 N 1.35519 * 107.71844 * 0.02562 * 7 6 5 9 9 N 1.28422 * 109.73171 * 359.70926 * 8 7 6 10 10 C 1.47004 * 123.90139 * 179.97438 * 8 7 6 11 11 C 1.53141 * 108.88464 * 342.33754 * 10 8 7 12 12 C 1.53147 * 109.60826 * 51.11931 * 11 10 8 13 13 C 1.50803 * 127.53618 * 180.02562 * 7 6 5 14 14 H 1.08995 * 109.71847 * 284.12789 * 13 7 6 15 15 N 1.46902 * 109.71336 * 44.76967 * 13 7 6 16 16 C 1.46904 * 111.00046 * 274.99878 * 15 13 7 17 17 C 1.52994 * 109.47330 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47376 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99771 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00097 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00011 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99877 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46897 * 90.00354 * 22 20 18 24 24 H 1.48507 * 109.46887 * 210.00027 * 22 20 18 25 25 H 1.48497 * 109.47313 * 330.00235 * 22 20 18 26 26 H 1.09001 * 109.47157 * 299.99783 * 1 2 3 27 27 H 1.09004 * 109.47122 * 59.99916 * 1 2 3 28 28 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08006 * 127.33485 * 359.93718 * 6 5 3 30 30 H 1.09002 * 109.56690 * 102.15279 * 10 8 7 31 31 H 1.08994 * 109.57089 * 222.50988 * 10 8 7 32 32 H 1.09009 * 109.44693 * 171.15826 * 11 10 8 33 33 H 1.08998 * 109.44601 * 291.07367 * 11 10 8 34 34 H 1.09003 * 109.54307 * 50.26996 * 12 11 10 35 35 H 1.08997 * 109.54606 * 170.44247 * 12 11 10 36 36 H 1.00896 * 111.00213 * 151.04349 * 15 13 7 37 37 H 1.09006 * 109.46922 * 300.00089 * 16 15 13 38 38 H 1.08998 * 109.47055 * 59.99938 * 16 15 13 39 39 H 1.09006 * 109.46944 * 299.99773 * 17 16 15 40 40 H 1.08998 * 109.47349 * 59.99816 * 17 16 15 41 41 H 0.96998 * 120.00249 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5375 1.2776 -0.0006 6 6 4.3196 2.4590 -0.0001 7 6 5.5993 2.0392 -0.0004 8 7 5.5887 0.6840 -0.0015 9 7 4.3766 0.2598 0.0042 10 6 6.8025 -0.1454 -0.0026 11 6 7.9905 0.7152 -0.4420 12 6 8.0320 1.9986 0.3927 13 6 6.8451 2.8890 0.0005 14 1 7.0078 3.3039 -0.9942 15 7 6.7011 3.9785 0.9753 16 6 5.9983 5.1248 0.3836 17 6 5.8683 6.2369 1.4263 18 6 5.1468 7.4126 0.8196 19 1 4.8146 7.3710 -0.2072 20 6 4.9108 8.5414 1.5753 21 7 4.2816 9.5676 1.0456 22 14 5.4848 8.6131 3.3515 23 1 6.8613 9.1675 3.4048 24 1 4.5698 9.4838 4.1326 25 1 5.4794 7.2450 3.9290 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9650 3.4792 -0.0003 30 1 6.9822 -0.5307 1.0011 31 1 6.6765 -0.9759 -0.6972 32 1 8.9159 0.1577 -0.2966 33 1 7.8831 0.9711 -1.4960 34 1 7.9660 1.7473 1.4514 35 1 8.9653 2.5281 0.2013 36 1 7.5988 4.2554 1.3433 37 1 6.5625 5.4943 -0.4727 38 1 5.0057 4.8138 0.0579 39 1 5.3043 5.8676 2.2829 40 1 6.8610 6.5478 1.7516 41 1 4.1159 10.3619 1.5771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886587743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = -31.336875 kcal Electronic energy + Delta-G solvation = -23457.410696 eV Core-core repulsion = 19952.044045 eV Total energy + Delta-G solvation = -3505.366651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.94287 -41.29311 -38.66215 -37.59684 -36.66390 -35.04371 -33.27897 -31.77047 -31.20949 -29.22845 -28.61281 -26.18573 -25.03925 -23.94170 -23.13356 -22.41427 -21.61437 -20.33497 -18.98382 -18.34966 -18.23926 -17.68610 -17.41929 -17.09397 -16.49012 -16.15123 -15.87699 -15.40390 -15.22252 -14.99724 -14.80307 -14.71396 -14.36821 -14.13080 -13.82931 -13.36779 -13.19051 -13.09086 -12.83868 -12.53830 -12.22419 -12.02239 -11.98945 -11.96293 -11.88124 -11.80896 -11.66221 -11.42301 -11.39704 -10.75725 -10.21078 -10.07946 -9.42438 -8.28938 -6.33517 0.14738 0.97900 1.24522 1.35546 1.39990 1.52363 1.77178 1.98695 2.37473 3.06766 3.07205 3.26681 3.46402 3.68310 3.78002 3.99179 4.21151 4.26433 4.28596 4.30435 4.31158 4.34351 4.47848 4.53728 4.64157 4.66231 4.73754 4.86991 4.96685 4.99042 5.04972 5.12307 5.19553 5.23762 5.37026 5.50286 5.65456 5.71034 6.05676 6.26345 6.49873 6.55508 6.75592 6.84040 7.31298 8.88113 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.004613 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.208472 B = 6068.741519 C = 7994.821567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.556 3.444 4 O -0.530 6.530 5 C -0.040 4.040 6 C -0.185 4.185 7 C 0.039 3.961 8 N -0.262 5.262 9 N -0.237 5.237 10 C 0.106 3.894 11 C -0.124 4.124 12 C -0.124 4.124 13 C 0.151 3.849 14 H 0.071 0.929 15 N -0.684 5.684 16 C 0.082 3.918 17 C -0.003 4.003 18 C -0.534 4.534 19 H 0.029 0.971 20 C 0.004 3.996 21 N -0.952 5.952 22 Si 0.954 3.046 23 H -0.260 1.260 24 H -0.287 1.287 25 H -0.250 1.250 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.358 0.642 37 H 0.026 0.974 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.026 0.974 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.835 -26.132 -1.738 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.400 3.600 4 O -0.417 6.417 5 C -0.195 4.195 6 C -0.213 4.213 7 C -0.085 4.085 8 N -0.054 5.054 9 N -0.075 5.075 10 C -0.011 4.011 11 C -0.162 4.162 12 C -0.161 4.161 13 C 0.040 3.960 14 H 0.089 0.911 15 N -0.318 5.318 16 C -0.047 4.047 17 C -0.041 4.041 18 C -0.573 4.573 19 H 0.048 0.952 20 C -0.192 4.192 21 N -0.593 5.593 22 Si 0.778 3.222 23 H -0.184 1.184 24 H -0.213 1.213 25 H -0.173 1.173 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.180 0.820 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.044 0.956 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.102 -27.204 -1.416 28.420 hybrid contribution -0.378 2.221 -0.077 2.254 sum 7.724 -24.983 -1.493 26.193 Atomic orbital electron populations 1.23675 0.73930 1.06182 1.02802 1.86609 1.25444 1.30788 1.83621 1.19747 0.86603 0.81750 0.71899 1.90875 1.66161 1.37189 1.47502 1.20714 0.90907 0.91693 1.16203 1.21453 0.92142 0.98647 1.09024 1.21465 0.96995 0.84886 1.05188 1.46376 1.05354 1.05222 1.48485 1.73431 0.90437 1.25974 1.17694 1.22807 0.78200 0.93845 1.06290 1.21969 0.97984 0.95478 1.00770 1.21936 0.96726 0.95820 1.01663 1.20250 0.89393 0.90597 0.95761 0.91132 1.60217 1.26531 1.08848 1.36166 1.21811 0.97732 0.89454 0.95718 1.19413 0.96291 0.92694 0.95672 1.21425 1.37041 1.00021 0.98764 0.95216 1.26018 0.94698 0.94888 1.03617 1.70074 1.43691 1.06325 1.39224 0.85596 0.78698 0.79121 0.78835 1.18419 1.21313 1.17324 0.91872 0.91692 0.84125 0.83954 0.86799 0.85944 0.84281 0.90243 0.89915 0.87610 0.82036 0.95532 0.92896 0.96507 0.95553 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.57 113.37 1.20 1.74 16 2 O -0.35 -10.10 10.58 -56.37 -0.60 -10.69 16 3 C 0.56 19.75 7.97 70.29 0.56 20.31 16 4 O -0.53 -21.80 16.72 19.87 0.33 -21.46 16 5 C -0.04 -1.39 7.17 42.45 0.30 -1.09 16 6 C -0.18 -6.71 9.98 22.31 0.22 -6.49 16 7 C 0.04 1.11 6.27 41.21 0.26 1.37 16 8 N -0.26 -6.29 3.74 -333.33 -1.25 -7.54 16 9 N -0.24 -7.08 12.04 -48.10 -0.58 -7.66 16 10 C 0.11 1.20 7.17 86.33 0.62 1.82 16 11 C -0.12 -0.88 5.91 30.69 0.18 -0.70 16 12 C -0.12 -1.53 5.28 30.80 0.16 -1.37 16 13 C 0.15 3.51 2.87 44.36 0.13 3.63 16 14 H 0.07 1.64 7.83 -2.39 -0.02 1.62 16 15 N -0.68 -20.24 6.24 -494.45 -3.09 -23.33 16 16 C 0.08 3.21 5.34 86.30 0.46 3.67 16 17 C 0.00 -0.14 4.30 29.85 0.13 -0.01 16 18 C -0.53 -31.75 9.66 25.60 0.25 -31.51 16 19 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 20 C 0.00 0.27 5.47 84.66 0.46 0.73 16 21 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 22 Si 0.95 45.47 27.47 68.60 1.88 47.36 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.14 5.92 5.83 -2.91 -0.02 5.90 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.14 0.00 8.14 -2.38 -0.02 -0.02 16 33 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 34 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.36 8.85 8.39 -89.70 -0.75 8.10 16 37 H 0.03 1.03 8.06 -2.38 -0.02 1.01 16 38 H 0.05 2.30 5.27 -2.39 -0.01 2.29 16 39 H 0.02 0.82 7.20 -2.38 -0.02 0.81 16 40 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 41 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -82.33 339.10 2.18 -80.15 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.24 Total: 12.25 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 4.93 Total: -7.88 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -4.61 Total: -99.72 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.26 Total: -32.16 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -82.33 2.18 -80.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886587743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.814 kcal (2) G-P(sol) polarization free energy of solvation -82.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds