Wall clock time and date at job start Tue Mar 31 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34728 * 116.99970 * 2 1 4 4 O 1.21490 * 119.99979 * 0.02562 * 3 2 1 5 5 C 1.47581 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.41688 * 126.50517 * 180.02562 * 5 3 2 7 7 C 1.34682 * 105.33760 * 179.97438 * 6 5 3 8 8 N 1.35514 * 107.72318 * 359.96835 * 7 6 5 9 9 N 1.28424 * 109.73097 * 0.04917 * 8 7 6 10 10 C 1.47008 * 123.89806 * 180.31567 * 8 7 6 11 11 C 1.53022 * 108.95040 * 17.32156 * 10 8 7 12 12 C 1.53148 * 109.71073 * 309.13130 * 11 10 8 13 13 C 1.50806 * 127.52763 * 179.97438 * 7 6 5 14 14 H 1.09001 * 109.71617 * 75.79190 * 13 7 6 15 15 N 1.46904 * 109.71809 * 315.19026 * 13 7 6 16 16 C 1.46903 * 110.99764 * 84.99805 * 15 13 7 17 17 C 1.52997 * 109.46889 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47111 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99940 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00223 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99806 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00307 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47018 * 89.99949 * 22 20 18 24 24 H 1.48498 * 109.47175 * 210.00054 * 22 20 18 25 25 H 1.48497 * 109.46794 * 329.99803 * 22 20 18 26 26 H 1.08995 * 109.46790 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47303 * 299.99767 * 1 2 3 28 28 H 1.09000 * 109.47354 * 59.99920 * 1 2 3 29 29 H 1.08000 * 127.33036 * 0.02562 * 6 5 3 30 30 H 1.08995 * 109.56629 * 137.21034 * 10 8 7 31 31 H 1.09006 * 109.56452 * 257.56156 * 10 8 7 32 32 H 1.09005 * 109.48505 * 189.00584 * 11 10 8 33 33 H 1.09004 * 109.28588 * 69.13996 * 11 10 8 34 34 H 1.08998 * 109.54062 * 309.62267 * 12 11 10 35 35 H 1.09001 * 109.61463 * 189.40510 * 12 11 10 36 36 H 1.00900 * 110.99617 * 208.95367 * 15 13 7 37 37 H 1.08997 * 109.47000 * 300.00235 * 16 15 13 38 38 H 1.09007 * 109.46865 * 60.00459 * 16 15 13 39 39 H 1.08997 * 109.47394 * 300.00475 * 17 16 15 40 40 H 1.09007 * 109.46680 * 60.00727 * 17 16 15 41 41 H 0.97004 * 119.99845 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5374 1.2777 0.0006 6 6 4.3195 2.4592 0.0012 7 6 5.5992 2.0393 0.0021 8 7 5.5887 0.6842 0.0028 9 7 4.3766 0.2600 0.0013 10 6 6.8026 -0.1451 0.0107 11 6 7.9896 0.7156 0.4483 12 6 8.0327 1.9989 -0.3864 13 6 6.8449 2.8892 0.0025 14 1 7.0061 3.3050 0.9971 15 7 6.7020 3.9786 -0.9727 16 6 5.9984 5.1249 -0.3819 17 6 5.8695 6.2368 -1.4250 18 6 5.1472 7.4125 -0.8193 19 1 4.8138 7.3710 0.2071 20 6 4.9120 8.5412 -1.5753 21 7 5.3176 8.5915 -2.8254 22 14 4.0172 9.9989 -0.8243 23 1 5.0041 10.9207 -0.2066 24 1 3.2646 10.7172 -1.8839 25 1 3.0717 9.5175 0.2146 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9650 3.4793 0.0017 30 1 6.6745 -0.9729 0.7080 31 1 6.9853 -0.5343 -0.9910 32 1 8.9154 0.1582 0.3050 33 1 7.8796 0.9716 1.5022 34 1 7.9688 1.7475 -1.4451 35 1 8.9649 2.5299 -0.1933 36 1 7.6002 4.2555 -1.3396 37 1 5.0055 4.8138 -0.0574 38 1 6.5616 5.4946 0.4750 39 1 6.8626 6.5478 -1.7492 40 1 5.3065 5.8673 -2.2821 41 1 5.1524 9.3858 -3.3573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886587744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:48 Heat of formation + Delta-G solvation = -8.780162 kcal Electronic energy + Delta-G solvation = -23408.986479 eV Core-core repulsion = 19904.597960 eV Total energy + Delta-G solvation = -3504.388519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.78752 -40.04718 -37.53357 -36.34527 -35.44427 -33.16729 -31.64843 -30.59963 -29.45021 -28.04214 -27.38532 -24.73116 -23.71198 -22.78992 -22.17848 -20.92113 -20.26402 -19.34677 -17.20393 -17.08650 -16.59090 -16.37511 -16.26309 -15.93106 -15.02323 -14.84426 -14.44973 -14.33698 -13.99674 -13.82860 -13.61878 -13.26355 -12.95992 -12.69042 -12.30102 -12.15742 -12.08042 -11.55103 -11.36383 -11.21231 -11.01167 -10.93953 -10.77957 -10.75875 -10.62804 -10.48070 -9.97092 -9.37354 -9.13981 -9.08307 -8.81895 -8.33180 -7.99847 -5.97255 -3.99639 1.41965 2.20578 2.25900 2.82924 3.30399 3.35100 3.41666 3.46001 4.05577 4.24779 4.38794 4.49005 4.57709 4.66166 4.81834 4.97804 5.06230 5.14477 5.15987 5.19093 5.33941 5.37052 5.39300 5.45490 5.57816 5.59058 5.78324 5.89831 6.03450 6.26066 6.31997 6.39098 6.56402 6.78681 6.98792 7.35321 7.69193 7.72672 7.77314 7.91100 8.06116 8.08085 8.44473 9.07317 9.64428 11.14181 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.004488 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.012275 B = 6237.246850 C = 8343.695068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.556 3.444 4 O -0.493 6.493 5 C -0.014 4.014 6 C -0.150 4.150 7 C 0.035 3.965 8 N -0.277 5.277 9 N -0.239 5.239 10 C 0.122 3.878 11 C -0.133 4.133 12 C -0.130 4.130 13 C 0.153 3.847 14 H 0.066 0.934 15 N -0.679 5.679 16 C 0.060 3.940 17 C 0.026 3.974 18 C -0.521 4.521 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.171 0.829 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.345 0.655 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.026 0.974 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -20.780 6.945 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.398 3.602 4 O -0.378 6.378 5 C -0.171 4.171 6 C -0.177 4.177 7 C -0.088 4.088 8 N -0.069 5.069 9 N -0.077 5.077 10 C 0.003 3.997 11 C -0.171 4.171 12 C -0.168 4.168 13 C 0.042 3.958 14 H 0.083 0.917 15 N -0.312 5.312 16 C -0.068 4.068 17 C -0.011 4.011 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.189 0.811 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.045 0.955 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.710 -21.862 6.497 22.968 hybrid contribution -0.118 2.075 0.812 2.232 sum 2.592 -19.787 7.310 21.253 Atomic orbital electron populations 1.23283 0.76238 1.03548 1.02742 1.86625 1.23172 1.32344 1.84319 1.19608 0.86364 0.81515 0.72676 1.90900 1.65380 1.35960 1.45543 1.20660 0.90523 0.91398 1.14548 1.21530 0.90266 0.99436 1.06426 1.21283 0.97371 0.83728 1.06458 1.45783 1.04765 1.05295 1.51034 1.73471 0.89609 1.26613 1.17969 1.22126 0.79922 0.93414 1.04263 1.21887 0.97198 0.96701 1.01355 1.21908 0.98264 0.95395 1.01278 1.20044 0.88327 0.91293 0.96183 0.91673 1.60442 1.25793 1.09828 1.35105 1.22405 0.97146 0.89785 0.97468 1.19058 0.97196 0.90908 0.93954 1.21158 1.37050 0.99630 0.98164 0.92692 1.24982 0.95807 0.98633 0.94811 1.69974 1.46866 1.28875 1.07558 0.86600 0.79870 0.82648 0.78947 1.20752 1.21199 1.19776 0.88130 0.91826 0.91713 0.81143 0.88187 0.88781 0.88459 0.90384 0.89952 0.90014 0.83528 0.91573 0.96264 0.96811 0.95530 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.35 -5.05 10.58 -40.57 -0.43 -5.48 16 3 C 0.56 9.50 7.97 34.54 0.28 9.77 16 4 O -0.49 -9.51 16.72 -19.26 -0.32 -9.83 16 5 C -0.01 -0.24 7.17 -82.71 -0.59 -0.84 16 6 C -0.15 -2.64 9.98 -39.52 -0.39 -3.03 16 7 C 0.03 0.53 6.27 -82.17 -0.51 0.01 16 8 N -0.28 -3.71 3.74 -56.77 -0.21 -3.93 16 9 N -0.24 -3.75 12.04 33.44 0.40 -3.35 16 10 C 0.12 1.00 7.17 -3.75 -0.03 0.97 16 11 C -0.13 -0.87 5.90 -26.64 -0.16 -1.03 16 12 C -0.13 -1.18 5.28 -26.42 -0.14 -1.32 16 13 C 0.15 2.03 2.87 -68.58 -0.20 1.83 16 14 H 0.07 0.85 7.82 -51.93 -0.41 0.44 16 15 N -0.68 -11.23 6.24 -107.64 -0.67 -11.90 16 16 C 0.06 1.21 5.33 -3.82 -0.02 1.19 16 17 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 18 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 22 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.17 3.27 5.83 -52.49 -0.31 2.96 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.35 5.23 8.39 -39.29 -0.33 4.90 16 37 H 0.07 1.38 5.27 -51.93 -0.27 1.11 16 38 H 0.02 0.38 8.06 -51.92 -0.42 -0.04 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.03 0.75 8.14 -51.92 -0.42 0.32 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -34.74 342.70 -7.53 -42.27 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.92 Total: 0.42 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.26 Total: -3.99 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.25 Total: -45.51 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.75 Total: -15.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.74 -7.53 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886587744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.489 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds