Wall clock time and date at job start Tue Mar 31 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34728 * 116.99970 * 2 1 4 4 O 1.21490 * 119.99979 * 0.02562 * 3 2 1 5 5 C 1.47581 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.41688 * 126.50517 * 180.02562 * 5 3 2 7 7 C 1.34682 * 105.33760 * 179.97438 * 6 5 3 8 8 N 1.35514 * 107.72318 * 359.96835 * 7 6 5 9 9 N 1.28424 * 109.73097 * 0.04917 * 8 7 6 10 10 C 1.47008 * 123.89806 * 180.31567 * 8 7 6 11 11 C 1.53022 * 108.95040 * 17.32156 * 10 8 7 12 12 C 1.53148 * 109.71073 * 309.13130 * 11 10 8 13 13 C 1.50806 * 127.52763 * 179.97438 * 7 6 5 14 14 H 1.09001 * 109.71617 * 75.79190 * 13 7 6 15 15 N 1.46904 * 109.71809 * 315.19026 * 13 7 6 16 16 C 1.46903 * 110.99764 * 84.99805 * 15 13 7 17 17 C 1.52997 * 109.46889 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47111 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99940 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00223 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99806 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00307 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47018 * 89.99949 * 22 20 18 24 24 H 1.48498 * 109.47175 * 210.00054 * 22 20 18 25 25 H 1.48497 * 109.46794 * 329.99803 * 22 20 18 26 26 H 1.08995 * 109.46790 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47303 * 299.99767 * 1 2 3 28 28 H 1.09000 * 109.47354 * 59.99920 * 1 2 3 29 29 H 1.08000 * 127.33036 * 0.02562 * 6 5 3 30 30 H 1.08995 * 109.56629 * 137.21034 * 10 8 7 31 31 H 1.09006 * 109.56452 * 257.56156 * 10 8 7 32 32 H 1.09005 * 109.48505 * 189.00584 * 11 10 8 33 33 H 1.09004 * 109.28588 * 69.13996 * 11 10 8 34 34 H 1.08998 * 109.54062 * 309.62267 * 12 11 10 35 35 H 1.09001 * 109.61463 * 189.40510 * 12 11 10 36 36 H 1.00900 * 110.99617 * 208.95367 * 15 13 7 37 37 H 1.08997 * 109.47000 * 300.00235 * 16 15 13 38 38 H 1.09007 * 109.46865 * 60.00459 * 16 15 13 39 39 H 1.08997 * 109.47394 * 300.00475 * 17 16 15 40 40 H 1.09007 * 109.46680 * 60.00727 * 17 16 15 41 41 H 0.97004 * 119.99845 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5374 1.2777 0.0006 6 6 4.3195 2.4592 0.0012 7 6 5.5992 2.0393 0.0021 8 7 5.5887 0.6842 0.0028 9 7 4.3766 0.2600 0.0013 10 6 6.8026 -0.1451 0.0107 11 6 7.9896 0.7156 0.4483 12 6 8.0327 1.9989 -0.3864 13 6 6.8449 2.8892 0.0025 14 1 7.0061 3.3050 0.9971 15 7 6.7020 3.9786 -0.9727 16 6 5.9984 5.1249 -0.3819 17 6 5.8695 6.2368 -1.4250 18 6 5.1472 7.4125 -0.8193 19 1 4.8138 7.3710 0.2071 20 6 4.9120 8.5412 -1.5753 21 7 5.3176 8.5915 -2.8254 22 14 4.0172 9.9989 -0.8243 23 1 5.0041 10.9207 -0.2066 24 1 3.2646 10.7172 -1.8839 25 1 3.0717 9.5175 0.2146 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9650 3.4793 0.0017 30 1 6.6745 -0.9729 0.7080 31 1 6.9853 -0.5343 -0.9910 32 1 8.9154 0.1582 0.3050 33 1 7.8796 0.9716 1.5022 34 1 7.9688 1.7475 -1.4451 35 1 8.9649 2.5299 -0.1933 36 1 7.6002 4.2555 -1.3396 37 1 5.0055 4.8138 -0.0574 38 1 6.5616 5.4946 0.4750 39 1 6.8626 6.5478 -1.7492 40 1 5.3065 5.8673 -2.2821 41 1 5.1524 9.3858 -3.3573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886587744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:47 Heat of formation + Delta-G solvation = -33.484957 kcal Electronic energy + Delta-G solvation = -23410.057759 eV Core-core repulsion = 19904.597960 eV Total energy + Delta-G solvation = -3505.459799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.93561 -41.28630 -38.63693 -37.58845 -36.64118 -35.08724 -33.11767 -31.71434 -30.96804 -29.12782 -28.54362 -26.23730 -25.12241 -23.94529 -23.15715 -22.55204 -21.63582 -20.33462 -18.55838 -18.33873 -18.22375 -17.67085 -17.41114 -17.06830 -16.59109 -16.19842 -15.80864 -15.49164 -15.18091 -14.96105 -14.79406 -14.39485 -14.25088 -14.11101 -13.79463 -13.23273 -13.10513 -13.07816 -12.82975 -12.57424 -12.32785 -12.16156 -12.03930 -11.97284 -11.94863 -11.87405 -11.67196 -11.35390 -11.17939 -10.55367 -10.20384 -10.06974 -9.38140 -8.20113 -6.30655 0.15309 0.98639 1.24969 1.39121 1.41490 1.52365 1.77490 1.99549 2.40652 3.09073 3.13839 3.29999 3.47764 3.68839 3.78320 4.00163 4.21669 4.26843 4.29414 4.31098 4.31794 4.35095 4.52204 4.58182 4.65171 4.67144 4.76484 4.87529 4.99187 5.03692 5.07771 5.16090 5.23185 5.26233 5.46808 5.68219 5.70590 5.80175 6.10852 6.25431 6.50466 6.55842 6.84616 6.86555 7.38472 8.91970 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.004488 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.012275 B = 6237.246850 C = 8343.695068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.557 3.443 4 O -0.529 6.529 5 C -0.040 4.040 6 C -0.184 4.184 7 C 0.039 3.961 8 N -0.263 5.263 9 N -0.237 5.237 10 C 0.106 3.894 11 C -0.122 4.122 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.073 0.927 15 N -0.687 5.687 16 C 0.079 3.921 17 C 0.034 3.966 18 C -0.544 4.544 19 H 0.058 0.942 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.268 1.268 26 H 0.140 0.860 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.144 0.856 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.354 0.646 37 H 0.055 0.945 38 H 0.028 0.972 39 H -0.002 1.002 40 H -0.011 1.011 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -22.570 8.180 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.401 3.599 4 O -0.417 6.417 5 C -0.195 4.195 6 C -0.212 4.212 7 C -0.086 4.086 8 N -0.055 5.055 9 N -0.075 5.075 10 C -0.011 4.011 11 C -0.161 4.161 12 C -0.163 4.163 13 C 0.040 3.960 14 H 0.090 0.910 15 N -0.321 5.321 16 C -0.049 4.049 17 C -0.004 4.004 18 C -0.583 4.583 19 H 0.076 0.924 20 C -0.195 4.195 21 N -0.571 5.571 22 Si 0.787 3.213 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.192 1.192 26 H 0.158 0.842 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.175 0.825 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.017 0.983 40 H 0.007 0.993 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.310 -23.700 7.741 25.302 hybrid contribution -0.583 2.513 0.395 2.610 sum 3.727 -21.187 8.137 23.000 Atomic orbital electron populations 1.23673 0.73915 1.06179 1.02820 1.86610 1.25463 1.30788 1.83619 1.19718 0.86541 0.81764 0.71893 1.90865 1.66128 1.37153 1.47510 1.20723 0.90957 0.91649 1.16178 1.21452 0.92083 0.98687 1.08975 1.21464 0.97032 0.84884 1.05177 1.46367 1.05373 1.05205 1.48539 1.73427 0.90407 1.25992 1.17722 1.22777 0.78235 0.93853 1.06270 1.21939 0.98018 0.95334 1.00779 1.21929 0.96787 0.95978 1.01560 1.20248 0.89405 0.90596 0.95733 0.90964 1.60219 1.26332 1.09190 1.36324 1.21957 0.97522 0.89583 0.95852 1.18887 0.95251 0.92174 0.94043 1.21612 1.37346 1.00776 0.98523 0.92399 1.25911 0.96563 1.01779 0.95218 1.70100 1.48067 1.29903 1.08985 0.85493 0.78784 0.78904 0.78166 1.19259 1.20790 1.19211 0.84163 0.91582 0.91915 0.83854 0.85759 0.86971 0.84300 0.90061 0.90292 0.87773 0.82471 0.92662 0.95379 0.98328 0.99252 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.35 -10.15 10.58 -56.38 -0.60 -10.75 16 3 C 0.56 19.85 7.97 70.29 0.56 20.41 16 4 O -0.53 -21.64 16.72 19.87 0.33 -21.31 16 5 C -0.04 -1.41 7.17 42.45 0.30 -1.11 16 6 C -0.18 -6.83 9.98 22.31 0.22 -6.60 16 7 C 0.04 1.16 6.27 41.21 0.26 1.42 16 8 N -0.26 -6.59 3.74 -333.51 -1.25 -7.83 16 9 N -0.24 -7.26 12.04 -48.10 -0.58 -7.84 16 10 C 0.11 1.32 7.17 86.29 0.62 1.94 16 11 C -0.12 -1.02 5.90 30.65 0.18 -0.84 16 12 C -0.12 -1.81 5.28 30.80 0.16 -1.65 16 13 C 0.15 3.80 2.87 44.35 0.13 3.93 16 14 H 0.07 1.76 7.82 -2.39 -0.02 1.74 16 15 N -0.69 -22.79 6.24 -494.47 -3.09 -25.87 16 16 C 0.08 3.32 5.33 86.30 0.46 3.78 16 17 C 0.03 1.82 5.23 29.85 0.16 1.98 16 18 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.00 0.20 5.46 84.65 0.46 0.66 16 21 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 22 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.14 6.02 5.83 -2.91 -0.02 6.01 16 30 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.14 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.08 0.71 8.11 -2.38 -0.02 0.69 16 34 H 0.08 1.25 8.12 -2.39 -0.02 1.24 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.35 10.55 8.39 -89.69 -0.75 9.80 16 37 H 0.06 2.44 5.27 -2.39 -0.01 2.43 16 38 H 0.03 1.11 8.06 -2.38 -0.02 1.09 16 39 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -79.62 342.70 2.37 -77.24 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.29 Total: 12.15 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 4.94 Total: -5.92 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -4.63 Total: -99.02 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.26 Total: -32.05 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -79.62 2.37 -77.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886587744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.757 kcal (2) G-P(sol) polarization free energy of solvation -79.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds