Wall clock time and date at job start Tue Mar 31 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99715 * 2 1 4 4 N 1.46508 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.35036 * 124.88048 * 0.02562 * 4 3 2 6 6 C 1.35365 * 107.22647 * 179.97438 * 5 4 3 7 7 C 1.41497 * 105.50241 * 0.02562 * 6 5 4 8 8 C 1.47712 * 126.51875 * 180.02562 * 7 6 5 9 9 O 1.21566 * 120.00110 * 7.08907 * 8 7 6 10 10 N 1.34773 * 120.00196 * 187.09470 * 8 7 6 11 11 C 1.46926 * 120.63053 * 6.72424 * 10 8 7 12 12 C 1.53629 * 108.54184 * 126.37496 * 11 10 8 13 13 C 1.53038 * 109.24572 * 54.85599 * 12 11 10 14 14 C 1.50697 * 109.45164 * 178.50095 * 13 12 11 15 15 H 1.07994 * 120.00043 * 120.06497 * 14 13 12 16 16 C 1.37885 * 119.99682 * 300.06099 * 14 13 12 17 17 N 1.31512 * 119.99752 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99910 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47091 * 59.99955 * 18 16 14 20 20 H 1.48498 * 109.47305 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47334 * 300.00435 * 18 16 14 22 22 C 1.53046 * 109.53684 * 298.51779 * 13 12 11 23 23 C 1.46929 * 120.63067 * 187.01341 * 10 8 7 24 24 N 1.28464 * 124.88570 * 179.69556 * 4 3 2 25 25 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46971 * 299.99880 * 1 2 3 27 27 H 1.08998 * 109.47215 * 59.99967 * 1 2 3 28 28 H 1.09001 * 109.47239 * 60.00281 * 3 2 1 29 29 H 1.09004 * 109.47580 * 299.99975 * 3 2 1 30 30 H 1.08004 * 126.38566 * 359.97438 * 5 4 3 31 31 H 1.07999 * 127.24679 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.58899 * 246.20540 * 11 10 8 33 33 H 1.09000 * 109.58906 * 6.63387 * 11 10 8 34 34 H 1.09003 * 109.62884 * 294.86160 * 12 11 10 35 35 H 1.08998 * 109.43269 * 174.73054 * 12 11 10 36 36 H 1.09002 * 109.45770 * 58.52848 * 13 12 11 37 37 H 0.97004 * 119.99523 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.49302 * 301.41032 * 22 13 12 39 39 H 1.08999 * 109.49278 * 181.31692 * 22 13 12 40 40 H 1.08996 * 109.58669 * 353.36362 * 23 10 8 41 41 H 1.09001 * 109.58801 * 113.65408 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 7 3.4707 1.1899 0.0006 5 6 4.1531 0.0247 0.0006 6 6 5.4714 0.3321 0.0007 7 6 5.5300 1.7459 0.0014 8 6 6.7525 2.5750 0.0012 9 8 7.8419 2.0516 -0.1295 10 7 6.6602 3.9117 0.1460 11 6 5.3698 4.5443 0.4515 12 6 5.5391 5.4208 1.7017 13 6 6.6848 6.4094 1.4732 14 6 6.8311 7.2963 2.6828 15 1 7.7599 7.3095 3.2335 16 6 5.7789 8.0911 3.0861 17 7 4.6477 8.0746 2.4156 18 14 5.9604 9.1910 4.5849 19 1 7.0708 10.1515 4.3625 20 1 4.6962 9.9378 4.8069 21 1 6.2584 8.3576 5.7775 22 6 7.9875 5.6393 1.2451 23 6 7.8470 4.7647 -0.0047 24 7 4.2863 2.1824 -0.0048 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8900 30 1 3.7266 -0.9676 0.0006 31 1 6.3032 -0.3567 0.0011 32 1 5.0566 5.1611 -0.3909 33 1 4.6215 3.7748 0.6417 34 1 5.7677 4.7915 2.5619 35 1 4.6161 5.9701 1.8873 36 1 6.4670 7.0217 0.5981 37 1 3.9075 8.6334 2.6996 38 1 8.1930 5.0080 2.1096 39 1 8.8071 6.3442 1.1057 40 1 8.7338 4.1408 -0.1157 41 1 7.7328 5.3974 -0.8850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118752032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:14 Heat of formation + Delta-G solvation = 18.756441 kcal Electronic energy + Delta-G solvation = -23763.104572 eV Core-core repulsion = 20259.910130 eV Total energy + Delta-G solvation = -3503.194442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.61823 -39.30207 -38.43014 -36.63225 -33.50090 -32.80541 -31.34739 -30.51937 -29.83552 -27.87664 -26.41178 -25.74200 -23.59801 -22.39078 -21.73925 -21.21867 -19.71812 -18.57442 -17.60248 -17.12725 -16.81752 -16.61866 -16.02855 -15.44154 -15.35625 -14.59228 -14.52033 -14.32759 -13.60577 -13.26383 -13.07387 -12.98781 -12.82365 -12.64328 -12.52322 -12.18637 -12.04798 -11.55585 -11.37060 -10.89777 -10.66338 -10.58329 -10.42138 -10.27404 -10.02242 -9.67659 -9.43206 -9.16925 -9.09362 -8.98499 -8.72821 -8.31161 -7.86794 -5.97897 -4.03762 1.71853 1.93131 2.27277 3.31010 3.32516 3.36534 3.40194 3.57226 3.77137 4.44590 4.48288 4.62570 4.64428 4.76382 4.82989 4.92617 5.12011 5.23878 5.31771 5.72387 5.78472 5.89237 5.98130 6.07966 6.13858 6.24018 6.33369 6.42407 6.54481 6.63096 6.74874 6.87924 7.02190 7.14708 7.27129 7.41851 7.72886 7.92343 8.00138 8.08047 8.13823 8.46787 8.65006 8.99434 9.60567 11.07384 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.004217 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.040325 B = 6637.773497 C = 8103.503871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.399 6.399 3 C 0.304 3.696 4 N -0.298 5.298 5 C 0.002 3.998 6 C -0.188 4.188 7 C 0.003 3.997 8 C 0.596 3.404 9 O -0.552 6.552 10 N -0.585 5.585 11 C 0.085 3.915 12 C -0.121 4.121 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.123 4.123 23 C 0.112 3.888 24 N -0.250 5.250 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.182 0.818 31 H 0.162 0.838 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.035 0.965 35 H 0.102 0.898 36 H 0.027 0.973 37 H 0.260 0.740 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.516 -15.154 -6.227 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.317 6.317 3 C 0.145 3.855 4 N -0.086 5.086 5 C -0.141 4.141 6 C -0.215 4.215 7 C -0.157 4.157 8 C 0.382 3.618 9 O -0.429 6.429 10 N -0.316 5.316 11 C -0.038 4.038 12 C -0.159 4.159 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.161 4.161 23 C -0.010 4.010 24 N -0.085 5.085 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.199 0.801 31 H 0.179 0.821 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.054 0.946 35 H 0.120 0.880 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.816 -14.515 -6.302 18.622 hybrid contribution 0.103 0.172 0.903 0.925 sum -9.713 -14.344 -5.400 18.145 Atomic orbital electron populations 1.22821 0.77519 1.04028 1.01147 1.87693 1.21954 1.26286 1.95752 1.22244 0.74487 0.85392 1.03422 1.45543 1.06446 1.04367 1.52266 1.22770 0.91785 0.92761 1.06781 1.21765 0.96363 0.94318 1.09103 1.22113 0.90927 0.93862 1.08830 1.16983 0.86120 0.81577 0.77154 1.90723 1.27113 1.72580 1.52522 1.48101 1.11419 1.05014 1.67108 1.22772 0.83692 0.97974 0.99322 1.22071 1.04257 0.96328 0.93278 1.18654 0.89135 0.92289 0.97013 1.21195 0.98943 1.22803 1.11983 0.92788 1.24953 0.95382 0.96847 0.96773 1.69845 1.03424 1.40019 1.39826 0.86689 0.77242 0.80774 0.83463 1.20319 1.21366 1.20381 1.22004 1.00960 0.97709 0.95422 1.21744 0.87399 0.92747 0.99107 1.73639 1.00189 1.14279 1.20425 0.88328 0.92876 0.92988 0.89268 0.89448 0.80120 0.82058 0.92452 0.87441 0.94579 0.87988 0.95502 0.93046 0.92899 0.92133 0.90250 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 11.01 101.05 1.11 1.29 16 2 O -0.40 -3.20 9.75 -35.23 -0.34 -3.54 16 3 C 0.30 2.76 7.53 59.85 0.45 3.21 16 4 N -0.30 -3.90 3.70 -66.11 -0.24 -4.14 16 5 C 0.00 0.02 10.83 -17.17 -0.19 -0.17 16 6 C -0.19 -2.75 10.81 -39.37 -0.43 -3.17 16 7 C 0.00 0.06 6.82 -82.77 -0.56 -0.51 16 8 C 0.60 11.97 7.69 -12.39 -0.10 11.88 16 9 O -0.55 -12.06 16.36 5.31 0.09 -11.97 16 10 N -0.59 -11.80 2.97 -173.66 -0.52 -12.31 16 11 C 0.08 1.71 6.14 -3.48 -0.02 1.69 16 12 C -0.12 -2.84 5.17 -26.39 -0.14 -2.98 16 13 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 14 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.90 11.30 55.43 0.63 -24.27 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.12 -2.64 5.30 -26.61 -0.14 -2.79 16 23 C 0.11 2.19 6.44 -3.71 -0.02 2.17 16 24 N -0.25 -4.05 8.47 33.42 0.28 -3.77 16 25 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.18 1.67 7.71 -52.48 -0.40 1.26 16 31 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.11 2.07 4.18 -68.70 -0.29 1.78 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.63 6.03 -51.93 -0.31 2.32 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.52 7.00 -51.93 -0.36 1.15 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -32.39 335.65 -6.66 -39.05 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.98 Total: 0.82 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.61 Total: -1.09 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.15 Total: -44.49 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.26 Total: -15.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.39 -6.66 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118752032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.803 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds