Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99715 * 2 1 4 4 N 1.46508 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.35036 * 124.88048 * 0.02562 * 4 3 2 6 6 C 1.35365 * 107.22647 * 179.97438 * 5 4 3 7 7 C 1.41497 * 105.50241 * 0.02562 * 6 5 4 8 8 C 1.47712 * 126.51875 * 180.02562 * 7 6 5 9 9 O 1.21566 * 120.00110 * 7.08907 * 8 7 6 10 10 N 1.34773 * 120.00196 * 187.09470 * 8 7 6 11 11 C 1.46926 * 120.63053 * 6.72424 * 10 8 7 12 12 C 1.53629 * 108.54184 * 126.37496 * 11 10 8 13 13 C 1.53038 * 109.24572 * 54.85599 * 12 11 10 14 14 C 1.50697 * 109.45164 * 178.50095 * 13 12 11 15 15 H 1.07994 * 120.00043 * 120.06497 * 14 13 12 16 16 C 1.37885 * 119.99682 * 300.06099 * 14 13 12 17 17 N 1.31512 * 119.99752 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99910 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47091 * 59.99955 * 18 16 14 20 20 H 1.48498 * 109.47305 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47334 * 300.00435 * 18 16 14 22 22 C 1.53046 * 109.53684 * 298.51779 * 13 12 11 23 23 C 1.46929 * 120.63067 * 187.01341 * 10 8 7 24 24 N 1.28464 * 124.88570 * 179.69556 * 4 3 2 25 25 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46971 * 299.99880 * 1 2 3 27 27 H 1.08998 * 109.47215 * 59.99967 * 1 2 3 28 28 H 1.09001 * 109.47239 * 60.00281 * 3 2 1 29 29 H 1.09004 * 109.47580 * 299.99975 * 3 2 1 30 30 H 1.08004 * 126.38566 * 359.97438 * 5 4 3 31 31 H 1.07999 * 127.24679 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.58899 * 246.20540 * 11 10 8 33 33 H 1.09000 * 109.58906 * 6.63387 * 11 10 8 34 34 H 1.09003 * 109.62884 * 294.86160 * 12 11 10 35 35 H 1.08998 * 109.43269 * 174.73054 * 12 11 10 36 36 H 1.09002 * 109.45770 * 58.52848 * 13 12 11 37 37 H 0.97004 * 119.99523 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.49302 * 301.41032 * 22 13 12 39 39 H 1.08999 * 109.49278 * 181.31692 * 22 13 12 40 40 H 1.08996 * 109.58669 * 353.36362 * 23 10 8 41 41 H 1.09001 * 109.58801 * 113.65408 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 7 3.4707 1.1899 0.0006 5 6 4.1531 0.0247 0.0006 6 6 5.4714 0.3321 0.0007 7 6 5.5300 1.7459 0.0014 8 6 6.7525 2.5750 0.0012 9 8 7.8419 2.0516 -0.1295 10 7 6.6602 3.9117 0.1460 11 6 5.3698 4.5443 0.4515 12 6 5.5391 5.4208 1.7017 13 6 6.6848 6.4094 1.4732 14 6 6.8311 7.2963 2.6828 15 1 7.7599 7.3095 3.2335 16 6 5.7789 8.0911 3.0861 17 7 4.6477 8.0746 2.4156 18 14 5.9604 9.1910 4.5849 19 1 7.0708 10.1515 4.3625 20 1 4.6962 9.9378 4.8069 21 1 6.2584 8.3576 5.7775 22 6 7.9875 5.6393 1.2451 23 6 7.8470 4.7647 -0.0047 24 7 4.2863 2.1824 -0.0048 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8900 30 1 3.7266 -0.9676 0.0006 31 1 6.3032 -0.3567 0.0011 32 1 5.0566 5.1611 -0.3909 33 1 4.6215 3.7748 0.6417 34 1 5.7677 4.7915 2.5619 35 1 4.6161 5.9701 1.8873 36 1 6.4670 7.0217 0.5981 37 1 3.9075 8.6334 2.6996 38 1 8.1930 5.0080 2.1096 39 1 8.8071 6.3442 1.1057 40 1 8.7338 4.1408 -0.1157 41 1 7.7328 5.3974 -0.8850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118752032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -2.528490 kcal Electronic energy + Delta-G solvation = -23764.027556 eV Core-core repulsion = 20259.910130 eV Total energy + Delta-G solvation = -3504.117426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.72927 -40.86525 -39.03679 -38.36150 -35.36754 -33.95807 -32.98318 -31.94719 -31.39843 -28.77150 -27.90329 -26.65011 -25.16768 -24.08008 -23.26446 -22.28929 -21.33125 -20.05635 -18.71616 -18.49342 -17.91207 -17.74846 -17.34420 -16.87959 -16.49918 -16.44814 -15.65254 -15.37470 -15.08523 -14.85915 -14.57795 -14.29649 -14.12788 -13.97144 -13.93911 -13.48713 -13.22779 -13.18452 -12.79181 -12.48824 -12.46212 -12.13792 -12.06190 -11.77830 -11.43045 -11.20996 -11.12314 -10.99370 -10.66527 -10.39181 -10.23248 -10.04875 -9.53324 -8.06519 -6.20166 0.44539 1.08489 1.18198 1.42957 1.43522 1.51149 2.06052 2.33019 2.45017 2.67557 3.19376 3.34856 3.81231 3.95209 4.00492 4.06923 4.22370 4.32906 4.39481 4.47664 4.52928 4.54735 4.57891 4.69168 4.73487 4.82685 4.88207 4.92816 5.00496 5.19218 5.23134 5.33390 5.43547 5.57813 5.65252 5.71713 5.86033 5.99075 6.12031 6.39028 6.43399 6.84894 6.89072 7.13368 7.47030 8.96995 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.004217 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.040325 B = 6637.773497 C = 8103.503871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.410 6.410 3 C 0.297 3.703 4 N -0.291 5.291 5 C 0.021 3.979 6 C -0.199 4.199 7 C -0.032 4.032 8 C 0.594 3.406 9 O -0.575 6.575 10 N -0.592 5.592 11 C 0.100 3.900 12 C -0.109 4.109 13 C 0.046 3.954 14 C -0.537 4.537 15 H 0.048 0.952 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 0.951 3.049 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.276 1.276 22 C -0.113 4.113 23 C 0.116 3.884 24 N -0.266 5.266 25 H 0.113 0.887 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.216 0.784 31 H 0.171 0.829 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.019 0.981 35 H 0.079 0.921 36 H 0.005 0.995 37 H 0.262 0.738 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 -16.300 -6.301 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.329 6.329 3 C 0.139 3.861 4 N -0.080 5.080 5 C -0.122 4.122 6 C -0.227 4.227 7 C -0.190 4.190 8 C 0.382 3.618 9 O -0.455 6.455 10 N -0.323 5.323 11 C -0.023 4.023 12 C -0.148 4.148 13 C 0.027 3.973 14 C -0.575 4.575 15 H 0.066 0.934 16 C -0.182 4.182 17 N -0.551 5.551 18 Si 0.777 3.223 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.151 4.151 23 C -0.006 4.006 24 N -0.103 5.103 25 H 0.131 0.869 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.233 0.767 31 H 0.188 0.812 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.038 0.962 35 H 0.097 0.903 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.203 -15.662 -6.381 20.286 hybrid contribution 0.407 0.457 0.914 1.100 sum -10.796 -15.205 -5.467 19.433 Atomic orbital electron populations 1.23078 0.75609 1.05341 1.02119 1.87677 1.23844 1.25431 1.95924 1.22553 0.72322 0.86455 1.04779 1.45909 1.07826 1.04020 1.50238 1.23224 0.90850 0.93775 1.04383 1.21990 0.97922 0.93185 1.09590 1.21888 0.90587 0.94816 1.11722 1.17326 0.86865 0.81420 0.76208 1.90690 1.28319 1.72897 1.53588 1.48135 1.11258 1.05416 1.67444 1.22583 0.84335 0.97833 0.97542 1.21843 1.02599 0.96036 0.94338 1.18617 0.91109 0.92362 0.95212 1.21528 0.98995 1.23924 1.13060 0.93362 1.25659 0.95098 0.98049 0.99351 1.69959 1.03842 1.40417 1.40927 0.85730 0.77427 0.79043 0.80131 1.19821 1.20667 1.20147 1.21858 0.99603 0.97644 0.96026 1.21706 0.87786 0.92682 0.98454 1.73395 1.00123 1.15685 1.21120 0.86873 0.92117 0.91830 0.88278 0.87746 0.76693 0.81193 0.92339 0.85986 0.96203 0.90263 0.97737 0.92906 0.94100 0.91215 0.89597 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.44 16 2 O -0.41 -5.33 9.75 -148.98 -1.45 -6.78 16 3 C 0.30 4.62 7.53 127.77 0.96 5.58 16 4 N -0.29 -6.99 3.70 -463.54 -1.71 -8.70 16 5 C 0.02 0.46 10.83 83.54 0.90 1.37 16 6 C -0.20 -5.56 10.81 22.41 0.24 -5.32 16 7 C -0.03 -1.10 6.82 42.46 0.29 -0.81 16 8 C 0.59 23.92 7.69 86.75 0.67 24.58 16 9 O -0.58 -25.25 16.36 -3.92 -0.06 -25.31 16 10 N -0.59 -23.94 2.97 -821.61 -2.44 -26.38 16 11 C 0.10 4.06 6.14 86.51 0.53 4.59 16 12 C -0.11 -5.28 5.17 30.82 0.16 -5.12 16 13 C 0.05 2.31 2.06 -11.51 -0.02 2.28 16 14 C -0.54 -29.90 8.56 25.60 0.22 -29.68 16 15 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 16 C 0.02 0.95 5.30 84.66 0.45 1.40 16 17 N -0.91 -51.46 11.30 21.45 0.24 -51.22 16 18 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C -0.11 -4.94 5.30 30.67 0.16 -4.77 16 23 C 0.12 4.52 6.44 86.36 0.56 5.08 16 24 N -0.27 -8.33 8.47 -48.18 -0.41 -8.74 16 25 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 27 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.22 3.14 7.71 -2.91 -0.02 3.12 16 31 H 0.17 4.29 8.06 -2.91 -0.02 4.26 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.12 4.68 4.18 -24.08 -0.10 4.58 16 34 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 4.19 6.03 -2.39 -0.01 4.18 16 36 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.09 3.26 7.00 -2.39 -0.02 3.25 16 41 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -69.90 335.65 3.50 -66.41 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.94 Total: 14.53 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 6.37 Total: 0.63 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -4.32 Total: -95.04 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.52 Total: -32.10 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -69.90 3.50 -66.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118752032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.879 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds