Wall clock time and date at job start Tue Mar 31 2020 06:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00491 * 2 1 4 4 H 1.09006 * 110.04830 * 331.41648 * 3 2 1 5 5 C 1.54262 * 110.03230 * 92.83267 * 3 2 1 6 6 C 1.54893 * 104.19339 * 142.89940 * 5 3 2 7 7 C 1.54891 * 102.74731 * 322.05877 * 6 5 3 8 8 C 1.53875 * 110.03555 * 210.00507 * 3 2 1 9 9 H 1.09001 * 110.02683 * 0.04436 * 8 3 2 10 10 C 1.50700 * 110.03482 * 121.42626 * 8 3 2 11 11 O 1.21293 * 119.99810 * 359.97438 * 10 8 3 12 12 N 1.34777 * 119.99675 * 180.27753 * 10 8 3 13 13 C 1.40160 * 119.99865 * 179.72968 * 12 10 8 14 14 C 1.40408 * 125.96993 * 359.97438 * 13 12 10 15 15 C 1.35236 * 107.86576 * 179.97438 * 14 13 12 16 16 N 1.34970 * 107.86168 * 359.97438 * 15 14 13 17 17 C 1.46502 * 125.97586 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46981 * 125.00127 * 17 16 15 19 19 H 1.08004 * 119.99824 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00024 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99850 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99961 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47251 * 89.99704 * 22 20 18 24 24 H 1.48491 * 109.46967 * 209.99849 * 22 20 18 25 25 H 1.48507 * 109.46785 * 329.99501 * 22 20 18 26 26 N 1.31208 * 125.97625 * 179.69198 * 13 12 10 27 27 H 1.08997 * 109.47360 * 59.99767 * 1 2 3 28 28 H 1.09000 * 109.47438 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46950 * 300.00129 * 1 2 3 30 30 H 1.09006 * 110.48741 * 261.57408 * 5 3 2 31 31 H 1.09001 * 110.48631 * 24.22001 * 5 3 2 32 32 H 1.09000 * 110.75691 * 80.37397 * 6 5 3 33 33 H 1.09004 * 110.75402 * 203.55741 * 6 5 3 34 34 H 1.09004 * 110.48292 * 279.26118 * 7 6 5 35 35 H 1.09004 * 110.48259 * 156.62460 * 7 6 5 36 36 H 0.97001 * 120.00485 * 359.71840 * 12 10 8 37 37 H 1.08003 * 126.07205 * 359.97438 * 14 13 12 38 38 H 1.08002 * 126.07091 * 180.02562 * 15 14 13 39 39 H 1.08997 * 109.47456 * 245.00038 * 17 16 15 40 40 H 1.09002 * 109.46929 * 5.00109 * 17 16 15 41 41 H 0.97003 * 119.99726 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0126 -0.4899 5 6 2.2907 1.7590 1.4475 6 6 3.6254 2.5388 1.3494 7 6 4.4267 1.7154 0.3105 8 6 3.3683 1.2777 -0.7229 9 1 3.5836 0.2686 -1.0744 10 6 3.3542 2.2368 -1.8852 11 8 2.3579 2.8864 -2.1234 12 7 4.4465 2.3683 -2.6637 13 6 4.4314 3.2562 -3.7481 14 6 3.3519 4.0658 -4.1362 15 6 3.7342 4.7742 -5.2228 16 7 5.0062 4.4302 -5.5148 17 6 5.8092 4.9603 -6.6195 18 6 7.0984 5.5228 -6.0786 19 1 7.2997 5.4884 -5.0181 20 6 8.0215 6.0804 -6.9378 21 7 9.1463 6.5717 -6.4657 22 14 7.6737 6.1393 -8.7722 23 1 6.9712 7.4052 -9.1025 24 1 8.9542 6.0739 -9.5211 25 1 6.8191 4.9854 -9.1512 26 7 5.4253 3.4799 -4.5750 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.4933 2.4110 1.8043 31 1 2.4007 0.8954 2.1034 32 1 3.4545 3.5533 0.9894 33 1 4.1361 2.5530 2.3122 34 1 4.8817 0.8447 0.7828 35 1 5.1881 2.3356 -0.1624 36 1 5.2431 1.8486 -2.4735 37 1 2.3873 4.1142 -3.6527 38 1 3.1294 5.4891 -5.7609 39 1 6.0300 4.1595 -7.3252 40 1 5.2534 5.7488 -7.1270 41 1 9.7959 6.9637 -7.0702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120603358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:55 Heat of formation + Delta-G solvation = -2.113948 kcal Electronic energy + Delta-G solvation = -23200.954551 eV Core-core repulsion = 19696.855101 eV Total energy + Delta-G solvation = -3504.099450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96050 -40.03793 -38.26382 -35.99604 -34.85010 -33.30393 -31.40134 -29.70268 -29.34299 -28.46321 -27.10896 -26.32788 -23.33609 -22.22988 -21.20195 -20.72038 -19.95071 -19.30770 -17.62617 -17.12989 -16.82707 -16.27898 -15.88934 -15.62731 -15.08982 -14.99848 -14.62109 -14.32528 -13.93500 -13.91121 -13.45071 -13.13306 -12.72945 -12.55660 -12.36408 -12.16992 -12.12295 -11.63236 -11.49404 -11.36590 -11.14889 -11.08917 -10.82010 -10.75652 -10.66424 -10.05353 -10.01787 -9.80749 -9.61216 -9.52270 -8.78037 -8.22225 -7.55813 -6.24893 -4.27295 2.25231 2.63241 2.83146 3.14481 3.21558 3.22960 3.50346 3.64495 3.84013 4.17255 4.21727 4.31577 4.62829 4.84269 5.02878 5.03688 5.09693 5.17947 5.19290 5.28320 5.38327 5.41167 5.43876 5.51560 5.60627 5.65980 5.71438 5.79512 5.84463 6.04252 6.17329 6.35995 6.41297 6.53950 6.64145 6.99904 7.22848 7.32574 7.53499 7.79002 8.18477 8.31900 8.53853 8.84716 9.30012 10.87815 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033186 B = 0.003002 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.536924 B = 9325.651466 C = 9811.325785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.090 3.910 4 H 0.094 0.906 5 C -0.143 4.143 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.110 4.110 9 H 0.116 0.884 10 C 0.530 3.470 11 O -0.519 6.519 12 N -0.628 5.628 13 C 0.259 3.741 14 C -0.284 4.284 15 C 0.051 3.949 16 N -0.319 5.319 17 C 0.232 3.768 18 C -0.535 4.535 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.888 5.888 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.296 5.296 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 -10.970 13.237 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.031 3.969 4 H 0.111 0.889 5 C -0.180 4.180 6 C -0.162 4.162 7 C -0.154 4.154 8 C -0.132 4.132 9 H 0.134 0.866 10 C 0.316 3.684 11 O -0.393 6.393 12 N -0.275 5.275 13 C 0.006 3.994 14 C -0.315 4.315 15 C -0.098 4.098 16 N -0.100 5.100 17 C 0.113 3.887 18 C -0.573 4.573 19 H 0.104 0.896 20 C -0.127 4.127 21 N -0.525 5.525 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.126 5.126 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.248 0.752 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.909 -10.827 12.602 21.668 hybrid contribution -0.522 0.324 -0.769 0.985 sum -14.431 -10.503 11.832 21.414 Atomic orbital electron populations 1.22775 0.80968 1.02525 1.00214 1.87869 1.19801 1.27691 1.95011 1.22786 0.93750 0.85281 0.95036 0.88855 1.22859 0.98029 1.00380 0.96762 1.22458 0.95305 0.99151 0.99272 1.22399 0.96573 1.00766 0.95637 1.21880 0.97167 1.00130 0.93976 0.86637 1.20379 0.82178 0.83017 0.82859 1.90599 1.32452 1.45716 1.70566 1.42434 1.16892 1.41353 1.26810 1.19133 0.94169 0.94902 0.91246 1.21532 1.02078 1.05409 1.02468 1.22560 0.87553 1.01106 0.98630 1.48626 1.09347 1.29500 1.22552 1.20054 0.91987 0.94227 0.82448 1.21105 0.99785 1.39256 0.97156 0.89640 1.24833 0.94681 0.94497 0.98737 1.69872 1.08311 1.38715 1.35572 0.86904 0.78615 0.79174 0.85407 1.19700 1.20514 1.18856 1.77392 1.20130 1.11747 1.03363 0.93707 0.89786 0.94113 0.91193 0.90381 0.90948 0.90722 0.89821 0.90437 0.75177 0.82158 0.81380 0.94009 0.93321 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.38 -4.14 10.26 -35.23 -0.36 -4.51 16 3 C 0.09 0.95 2.98 -25.62 -0.08 0.87 16 4 H 0.09 1.13 6.06 -51.93 -0.31 0.82 16 5 C -0.14 -1.23 6.56 -25.07 -0.16 -1.39 16 6 C -0.12 -1.07 6.91 -24.74 -0.17 -1.24 16 7 C -0.12 -1.01 6.35 -25.07 -0.16 -1.17 16 8 C -0.11 -1.15 3.11 -90.66 -0.28 -1.44 16 9 H 0.12 1.10 7.95 -51.93 -0.41 0.69 16 10 C 0.53 7.49 7.03 -10.98 -0.08 7.41 16 11 O -0.52 -8.72 12.34 5.55 0.07 -8.65 16 12 N -0.63 -9.60 5.16 -11.13 -0.06 -9.66 16 13 C 0.26 5.13 8.11 -154.40 -1.25 3.88 16 14 C -0.28 -5.48 9.60 -39.83 -0.38 -5.86 16 15 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 16 N -0.32 -7.20 3.67 -62.56 -0.23 -7.43 16 17 C 0.23 5.48 5.33 -5.19 -0.03 5.45 16 18 C -0.53 -15.06 9.79 -34.44 -0.34 -15.39 16 19 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 20 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 21 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 22 Si 0.87 20.05 27.47 -169.99 -4.67 15.39 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 26 N -0.30 -6.75 12.42 31.44 0.39 -6.36 16 27 H 0.04 0.38 8.10 -51.93 -0.42 -0.04 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.71 7.52 -51.93 -0.39 0.32 16 36 H 0.41 5.21 8.73 -40.82 -0.36 4.86 16 37 H 0.16 2.99 5.92 -52.48 -0.31 2.68 16 38 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 39 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 40 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -33.59 339.86 -7.03 -40.62 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.94 Total: 5.95 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.13 Total: -4.71 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.88 Total: -49.20 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.29 Total: -13.16 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.59 -7.03 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120603358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.507 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds