Wall clock time and date at job start Tue Mar 31 2020 06:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00491 * 2 1 4 4 H 1.09006 * 110.04830 * 331.41648 * 3 2 1 5 5 C 1.54262 * 110.03230 * 92.83267 * 3 2 1 6 6 C 1.54893 * 104.19339 * 142.89940 * 5 3 2 7 7 C 1.54891 * 102.74731 * 322.05877 * 6 5 3 8 8 C 1.53875 * 110.03555 * 210.00507 * 3 2 1 9 9 H 1.09001 * 110.02683 * 0.04436 * 8 3 2 10 10 C 1.50700 * 110.03482 * 121.42626 * 8 3 2 11 11 O 1.21293 * 119.99810 * 359.97438 * 10 8 3 12 12 N 1.34777 * 119.99675 * 180.27753 * 10 8 3 13 13 C 1.40160 * 119.99865 * 179.72968 * 12 10 8 14 14 C 1.40408 * 125.96993 * 359.97438 * 13 12 10 15 15 C 1.35236 * 107.86576 * 179.97438 * 14 13 12 16 16 N 1.34970 * 107.86168 * 359.97438 * 15 14 13 17 17 C 1.46502 * 125.97586 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46981 * 125.00127 * 17 16 15 19 19 H 1.08004 * 119.99824 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00024 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99850 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99961 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47251 * 89.99704 * 22 20 18 24 24 H 1.48491 * 109.46967 * 209.99849 * 22 20 18 25 25 H 1.48507 * 109.46785 * 329.99501 * 22 20 18 26 26 N 1.31208 * 125.97625 * 179.69198 * 13 12 10 27 27 H 1.08997 * 109.47360 * 59.99767 * 1 2 3 28 28 H 1.09000 * 109.47438 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46950 * 300.00129 * 1 2 3 30 30 H 1.09006 * 110.48741 * 261.57408 * 5 3 2 31 31 H 1.09001 * 110.48631 * 24.22001 * 5 3 2 32 32 H 1.09000 * 110.75691 * 80.37397 * 6 5 3 33 33 H 1.09004 * 110.75402 * 203.55741 * 6 5 3 34 34 H 1.09004 * 110.48292 * 279.26118 * 7 6 5 35 35 H 1.09004 * 110.48259 * 156.62460 * 7 6 5 36 36 H 0.97001 * 120.00485 * 359.71840 * 12 10 8 37 37 H 1.08003 * 126.07205 * 359.97438 * 14 13 12 38 38 H 1.08002 * 126.07091 * 180.02562 * 15 14 13 39 39 H 1.08997 * 109.47456 * 245.00038 * 17 16 15 40 40 H 1.09002 * 109.46929 * 5.00109 * 17 16 15 41 41 H 0.97003 * 119.99726 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0126 -0.4899 5 6 2.2907 1.7590 1.4475 6 6 3.6254 2.5388 1.3494 7 6 4.4267 1.7154 0.3105 8 6 3.3683 1.2777 -0.7229 9 1 3.5836 0.2686 -1.0744 10 6 3.3542 2.2368 -1.8852 11 8 2.3579 2.8864 -2.1234 12 7 4.4465 2.3683 -2.6637 13 6 4.4314 3.2562 -3.7481 14 6 3.3519 4.0658 -4.1362 15 6 3.7342 4.7742 -5.2228 16 7 5.0062 4.4302 -5.5148 17 6 5.8092 4.9603 -6.6195 18 6 7.0984 5.5228 -6.0786 19 1 7.2997 5.4884 -5.0181 20 6 8.0215 6.0804 -6.9378 21 7 9.1463 6.5717 -6.4657 22 14 7.6737 6.1393 -8.7722 23 1 6.9712 7.4052 -9.1025 24 1 8.9542 6.0739 -9.5211 25 1 6.8191 4.9854 -9.1512 26 7 5.4253 3.4799 -4.5750 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.4933 2.4110 1.8043 31 1 2.4007 0.8954 2.1034 32 1 3.4545 3.5533 0.9894 33 1 4.1361 2.5530 2.3122 34 1 4.8817 0.8447 0.7828 35 1 5.1881 2.3356 -0.1624 36 1 5.2431 1.8486 -2.4735 37 1 2.3873 4.1142 -3.6527 38 1 3.1294 5.4891 -5.7609 39 1 6.0300 4.1595 -7.3252 40 1 5.2534 5.7488 -7.1270 41 1 9.7959 6.9637 -7.0702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120603358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:54 Heat of formation + Delta-G solvation = -25.187727 kcal Electronic energy + Delta-G solvation = -23201.955105 eV Core-core repulsion = 19696.855101 eV Total energy + Delta-G solvation = -3505.100004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34466 -41.25036 -39.23607 -36.78594 -36.28911 -35.21072 -33.17872 -31.07864 -30.52065 -29.20851 -28.83451 -27.05836 -24.89248 -23.67387 -22.30505 -21.84831 -21.27573 -20.48190 -19.11692 -18.63609 -18.18647 -17.44132 -17.14680 -16.71785 -16.48845 -15.98476 -15.92552 -15.49061 -15.18034 -14.95424 -14.80394 -14.50548 -14.36493 -13.88164 -13.86290 -13.43213 -13.03565 -12.86291 -12.53573 -12.39251 -12.30024 -12.19014 -12.05340 -11.86290 -11.82666 -11.64094 -11.56111 -11.46310 -10.87710 -10.80164 -10.55779 -9.80152 -9.14168 -8.38255 -6.48654 0.88469 1.26686 1.36012 1.40232 1.42343 1.49671 2.17663 2.25819 2.28560 2.87118 2.94448 3.33932 3.49313 3.72106 3.92539 4.09623 4.18623 4.31171 4.39198 4.43548 4.52939 4.58740 4.59614 4.64568 4.72303 4.77855 4.84433 4.87191 4.87842 4.92665 4.99042 5.09156 5.15434 5.16880 5.23702 5.36138 5.85474 5.98841 6.17620 6.25048 6.39242 6.57136 6.92949 7.05082 7.14394 8.78880 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033186 B = 0.003002 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.536924 B = 9325.651466 C = 9811.325785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.088 3.912 4 H 0.073 0.927 5 C -0.135 4.135 6 C -0.125 4.125 7 C -0.113 4.113 8 C -0.103 4.103 9 H 0.130 0.870 10 C 0.530 3.470 11 O -0.545 6.545 12 N -0.624 5.624 13 C 0.263 3.737 14 C -0.295 4.295 15 C 0.061 3.939 16 N -0.344 5.344 17 C 0.239 3.761 18 C -0.548 4.548 19 H 0.026 0.974 20 C 0.015 3.985 21 N -0.942 5.942 22 Si 0.956 3.044 23 H -0.253 1.253 24 H -0.281 1.281 25 H -0.239 1.239 26 N -0.346 5.346 27 H 0.037 0.963 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.424 0.576 37 H 0.168 0.832 38 H 0.211 0.789 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.413 -11.779 12.790 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.030 3.970 4 H 0.091 0.909 5 C -0.173 4.173 6 C -0.163 4.163 7 C -0.150 4.150 8 C -0.124 4.124 9 H 0.148 0.852 10 C 0.318 3.682 11 O -0.421 6.421 12 N -0.272 5.272 13 C 0.009 3.991 14 C -0.326 4.326 15 C -0.087 4.087 16 N -0.126 5.126 17 C 0.119 3.881 18 C -0.586 4.586 19 H 0.045 0.955 20 C -0.184 4.184 21 N -0.581 5.581 22 Si 0.776 3.224 23 H -0.177 1.177 24 H -0.206 1.206 25 H -0.163 1.163 26 N -0.177 5.177 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.261 0.739 37 H 0.185 0.815 38 H 0.228 0.772 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.597 -11.663 12.193 22.978 hybrid contribution -0.065 0.541 -0.457 0.712 sum -15.662 -11.122 11.735 22.510 Atomic orbital electron populations 1.22938 0.79786 1.03796 1.00476 1.87838 1.21134 1.27584 1.95146 1.22774 0.93155 0.84993 0.96077 0.90883 1.22819 0.98154 1.00800 0.95524 1.22478 0.95548 0.98128 1.00099 1.22452 0.95826 1.01669 0.95090 1.21937 0.98166 0.99525 0.92783 0.85237 1.21129 0.81150 0.82874 0.83022 1.90576 1.33356 1.46907 1.71292 1.42611 1.17992 1.40797 1.25849 1.19529 0.93564 0.94718 0.91323 1.21750 1.02271 1.05720 1.02872 1.23259 0.86462 1.00729 0.98259 1.48528 1.10442 1.30569 1.23027 1.19898 0.90453 0.94862 0.82854 1.21228 1.02557 1.40062 0.94719 0.95521 1.25922 0.93926 0.93474 1.05097 1.70049 1.09866 1.40109 1.38055 0.85614 0.78894 0.80724 0.77141 1.17712 1.20616 1.16264 1.77310 1.21981 1.13473 1.04945 0.94465 0.88054 0.92873 0.90642 0.89233 0.92688 0.88777 0.87310 0.91163 0.73861 0.81478 0.77215 0.93655 0.90016 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.85 113.37 1.23 1.62 16 2 O -0.40 -7.95 10.26 -148.98 -1.53 -9.48 16 3 C 0.09 1.76 2.98 31.32 0.09 1.86 16 4 H 0.07 1.77 6.06 -2.38 -0.01 1.75 16 5 C -0.14 -2.08 6.56 31.67 0.21 -1.88 16 6 C -0.13 -1.94 6.91 31.89 0.22 -1.72 16 7 C -0.11 -1.77 6.35 31.67 0.20 -1.57 16 8 C -0.10 -2.04 3.11 -10.82 -0.03 -2.07 16 9 H 0.13 2.24 7.95 -2.39 -0.02 2.22 16 10 C 0.53 14.84 7.03 87.66 0.62 15.46 16 11 O -0.55 -18.36 12.34 -3.07 -0.04 -18.40 16 12 N -0.62 -19.16 5.16 -307.51 -1.59 -20.74 16 13 C 0.26 10.54 8.11 133.33 1.08 11.62 16 14 C -0.30 -11.27 9.60 22.11 0.21 -11.06 16 15 C 0.06 2.26 11.44 83.52 0.96 3.21 16 16 N -0.34 -15.48 3.67 -351.84 -1.29 -16.77 16 17 C 0.24 11.08 5.33 85.63 0.46 11.54 16 18 C -0.55 -31.65 9.79 25.60 0.25 -31.40 16 19 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 20 C 0.01 0.83 5.47 84.66 0.46 1.29 16 21 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 22 Si 0.96 40.61 27.47 68.60 1.88 42.50 16 23 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 26 N -0.35 -16.19 12.42 -54.45 -0.68 -16.87 16 27 H 0.04 0.61 8.10 -2.39 -0.02 0.59 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 1.23 7.52 -2.39 -0.02 1.21 16 36 H 0.42 10.77 8.73 -92.71 -0.81 9.96 16 37 H 0.17 6.14 5.92 -2.91 -0.02 6.13 16 38 H 0.21 5.67 8.06 -2.91 -0.02 5.65 16 39 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 40 H 0.08 3.24 7.50 -2.39 -0.02 3.22 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -76.26 339.86 3.20 -73.06 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.18 Total: 27.53 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.95 Total: -3.10 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -3.25 Total: -112.11 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.57 Total: -27.88 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.88 Total: 42.50 kcal Total: -76.26 3.20 -73.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120603358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.873 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds