Wall clock time and date at job start Tue Mar 31 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00248 * 2 1 4 4 H 1.09001 * 110.01875 * 28.60659 * 3 2 1 5 5 C 1.54754 * 110.01511 * 267.22351 * 3 2 1 6 6 C 1.54890 * 103.96206 * 217.12432 * 5 3 2 7 7 C 1.54886 * 102.91567 * 37.92235 * 6 5 3 8 8 C 1.53869 * 110.03328 * 149.99731 * 3 2 1 9 9 H 1.08998 * 110.07680 * 238.58989 * 8 3 2 10 10 C 1.50695 * 110.03302 * 0.02562 * 8 3 2 11 11 O 1.21298 * 119.99966 * 83.43381 * 10 8 3 12 12 N 1.34774 * 120.00343 * 263.43247 * 10 8 3 13 13 C 1.40155 * 120.00439 * 179.97438 * 12 10 8 14 14 C 1.40409 * 125.97232 * 359.72679 * 13 12 10 15 15 C 1.35235 * 107.86909 * 179.82794 * 14 13 12 16 16 N 1.34968 * 107.85839 * 0.41971 * 15 14 13 17 17 C 1.46505 * 125.97294 * 179.69603 * 16 15 14 18 18 C 1.50701 * 109.47000 * 125.02269 * 17 16 15 19 19 H 1.07999 * 120.00230 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00256 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00508 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47115 * 89.99720 * 22 20 18 24 24 H 1.48501 * 109.47270 * 210.00109 * 22 20 18 25 25 H 1.48499 * 109.46790 * 330.00005 * 22 20 18 26 26 N 1.31215 * 125.97517 * 180.02562 * 13 12 10 27 27 H 1.09003 * 109.47183 * 300.00313 * 1 2 3 28 28 H 1.09003 * 109.46918 * 59.99684 * 1 2 3 29 29 H 1.08996 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08999 * 110.69721 * 98.48015 * 5 3 2 31 31 H 1.08997 * 110.50608 * 335.67892 * 5 3 2 32 32 H 1.09004 * 110.75813 * 279.51449 * 6 5 3 33 33 H 1.09005 * 110.75414 * 156.33131 * 6 5 3 34 34 H 1.09002 * 110.48627 * 80.64496 * 7 6 5 35 35 H 1.09005 * 110.48530 * 203.28260 * 7 6 5 36 36 H 0.97000 * 119.99420 * 0.02562 * 12 10 8 37 37 H 1.08005 * 126.06464 * 359.97438 * 14 13 12 38 38 H 1.07999 * 126.07287 * 180.13390 * 15 14 13 39 39 H 1.08999 * 109.47263 * 245.01486 * 17 16 15 40 40 H 1.08995 * 109.47683 * 5.02396 * 17 16 15 41 41 H 0.97005 * 120.00428 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3407 2.0120 0.4904 5 6 2.2901 1.7606 -1.4524 6 6 3.6254 2.5388 -1.3494 7 6 4.4267 1.7155 -0.3107 8 6 3.3683 1.2777 0.7229 9 1 3.3587 1.9710 1.5639 10 6 3.6669 -0.1177 1.2073 11 8 4.1596 -0.9293 0.4525 12 7 3.3864 -0.4639 2.4793 13 6 3.6636 -1.7618 2.9298 14 6 4.2245 -2.7977 2.1658 15 6 4.3351 -3.8863 2.9606 16 7 3.8550 -3.5598 4.1790 17 6 3.7809 -4.4486 5.3413 18 6 4.4904 -3.8104 6.5077 19 1 4.9508 -2.8400 6.3944 20 6 4.5517 -4.4652 7.7194 21 7 3.9915 -5.6471 7.8572 22 14 5.4317 -3.6745 9.1650 23 1 4.4693 -2.8512 9.9402 24 1 5.9953 -4.7332 10.0407 25 1 6.5303 -2.8105 8.6632 26 7 3.4392 -2.2229 4.1376 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.4947 2.4138 -1.8114 31 1 2.4013 0.8973 -2.1084 32 1 3.4545 3.5534 -0.9894 33 1 4.1392 2.5530 -2.3106 34 1 4.8817 0.8448 -0.7829 35 1 5.1882 2.3356 0.1623 36 1 2.9921 0.1851 3.0828 37 1 4.5180 -2.7355 1.1283 38 1 4.7324 -4.8478 2.6704 39 1 2.7364 -4.6204 5.6013 40 1 4.2571 -5.3995 5.1026 41 1 4.0343 -6.1077 8.7099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120603359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:58 Heat of formation + Delta-G solvation = -5.344033 kcal Electronic energy + Delta-G solvation = -23442.561105 eV Core-core repulsion = 19938.321588 eV Total energy + Delta-G solvation = -3504.239517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73460 -39.88068 -38.10039 -35.99690 -34.55867 -33.29677 -31.06604 -29.57067 -29.17489 -28.48150 -26.63086 -26.21520 -23.44423 -22.26251 -21.11821 -20.70623 -19.78593 -19.27009 -17.54865 -16.78679 -16.55594 -16.19346 -15.87559 -15.39360 -15.07431 -14.77447 -14.50226 -14.21747 -13.95559 -13.72090 -13.56349 -12.83137 -12.61561 -12.29907 -12.16757 -11.83710 -11.76553 -11.65846 -11.56195 -11.35465 -11.04388 -10.99173 -10.88280 -10.83177 -10.31076 -10.22609 -9.88193 -9.77330 -9.45094 -9.37389 -8.60915 -8.02760 -7.36288 -6.21771 -4.26691 2.48673 2.91567 3.02788 3.25234 3.30790 3.36362 3.53166 3.81974 3.98084 4.18648 4.33394 4.35036 4.64002 4.89358 4.96407 5.08322 5.10607 5.13246 5.14749 5.21893 5.30988 5.36829 5.56974 5.60643 5.62759 5.72417 5.74989 5.90118 5.91331 6.13480 6.40718 6.59744 6.73755 6.91852 7.01065 7.09796 7.54580 7.67844 7.75716 7.94234 8.11849 8.45648 8.72014 8.84660 9.38760 10.86908 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.003181 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.352970 B = 8800.067729 C = 9033.312033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.096 3.904 4 H 0.072 0.928 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.109 4.109 9 H 0.099 0.901 10 C 0.543 3.457 11 O -0.510 6.510 12 N -0.630 5.630 13 C 0.262 3.738 14 C -0.285 4.285 15 C 0.049 3.951 16 N -0.321 5.321 17 C 0.259 3.741 18 C -0.527 4.527 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 N -0.309 5.309 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.407 0.593 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 15.711 -17.117 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.037 3.963 4 H 0.090 0.910 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.131 4.131 9 H 0.117 0.883 10 C 0.329 3.671 11 O -0.383 6.383 12 N -0.277 5.277 13 C 0.009 3.991 14 C -0.317 4.317 15 C -0.101 4.101 16 N -0.103 5.103 17 C 0.141 3.859 18 C -0.566 4.566 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 N -0.140 5.140 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.508 14.984 -16.269 22.573 hybrid contribution 0.195 0.627 0.555 0.860 sum -4.313 15.611 -15.714 22.566 Atomic orbital electron populations 1.22792 0.81035 1.03051 0.99618 1.88103 1.19593 1.26429 1.94817 1.22810 0.92605 0.85438 0.95439 0.91015 1.22969 0.97777 1.00671 0.96784 1.22407 0.95498 0.98401 0.99520 1.22387 0.96341 1.00996 0.95276 1.22084 0.96509 0.94696 0.99811 0.88284 1.19980 0.77292 0.89424 0.80437 1.90593 1.42225 1.51334 1.54185 1.42499 1.62444 1.10204 1.12582 1.19118 1.01110 0.86265 0.92608 1.21512 1.15783 0.91860 1.02510 1.22544 1.00919 1.00320 0.86309 1.49039 1.43835 1.07251 1.10160 1.19715 0.99096 0.86936 0.80130 1.21269 1.35518 1.05074 0.94693 0.91319 1.24947 0.95509 0.94850 0.98816 1.69922 1.44087 1.13604 1.25835 0.86327 0.79777 0.78881 0.81503 1.20362 1.20998 1.19717 1.77310 1.26144 0.93835 1.16697 0.94017 0.94160 0.89544 0.91304 0.89950 0.91293 0.90848 0.89067 0.90817 0.75865 0.82361 0.81630 0.93816 0.92601 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.85 101.05 1.10 1.39 16 2 O -0.37 -4.67 8.82 -36.03 -0.32 -4.99 16 3 C 0.10 0.91 3.37 -25.36 -0.09 0.83 16 4 H 0.07 0.53 7.80 -51.93 -0.41 0.12 16 5 C -0.14 -1.17 6.60 -24.81 -0.16 -1.33 16 6 C -0.12 -0.86 6.89 -24.74 -0.17 -1.03 16 7 C -0.11 -1.04 6.32 -25.07 -0.16 -1.20 16 8 C -0.11 -1.13 3.29 -90.66 -0.30 -1.43 16 9 H 0.10 0.76 8.13 -51.93 -0.42 0.34 16 10 C 0.54 8.26 5.51 -10.99 -0.06 8.20 16 11 O -0.51 -9.40 12.93 4.74 0.06 -9.34 16 12 N -0.63 -10.36 5.45 -11.13 -0.06 -10.42 16 13 C 0.26 5.51 8.11 -154.39 -1.25 4.25 16 14 C -0.29 -5.96 9.60 -39.83 -0.38 -6.34 16 15 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 16 N -0.32 -7.70 3.67 -62.56 -0.23 -7.93 16 17 C 0.26 6.72 6.26 -5.19 -0.03 6.69 16 18 C -0.53 -14.90 9.24 -34.44 -0.32 -15.22 16 19 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 22 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 N -0.31 -7.34 12.42 31.44 0.39 -6.95 16 27 H 0.04 0.34 8.10 -51.93 -0.42 -0.08 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.06 6.93 -51.93 -0.36 0.70 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.41 5.52 8.81 -40.82 -0.36 5.16 16 37 H 0.16 3.24 5.92 -52.48 -0.31 2.93 16 38 H 0.17 2.84 8.06 -52.49 -0.42 2.42 16 39 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -33.82 343.37 -7.43 -41.25 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.04 Total: 4.31 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.12 Total: -2.73 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.84 Total: -50.21 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.26 Total: -14.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.82 -7.43 -41.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120603359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.909 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds