Wall clock time and date at job start Tue Mar 31 2020 06:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00248 * 2 1 4 4 H 1.09001 * 110.01875 * 28.60659 * 3 2 1 5 5 C 1.54754 * 110.01511 * 267.22351 * 3 2 1 6 6 C 1.54890 * 103.96206 * 217.12432 * 5 3 2 7 7 C 1.54886 * 102.91567 * 37.92235 * 6 5 3 8 8 C 1.53869 * 110.03328 * 149.99731 * 3 2 1 9 9 H 1.08998 * 110.07680 * 238.58989 * 8 3 2 10 10 C 1.50695 * 110.03302 * 0.02562 * 8 3 2 11 11 O 1.21298 * 119.99966 * 83.43381 * 10 8 3 12 12 N 1.34774 * 120.00343 * 263.43247 * 10 8 3 13 13 C 1.40155 * 120.00439 * 179.97438 * 12 10 8 14 14 C 1.40409 * 125.97232 * 359.72679 * 13 12 10 15 15 C 1.35235 * 107.86909 * 179.82794 * 14 13 12 16 16 N 1.34968 * 107.85839 * 0.41971 * 15 14 13 17 17 C 1.46505 * 125.97294 * 179.69603 * 16 15 14 18 18 C 1.50701 * 109.47000 * 125.02269 * 17 16 15 19 19 H 1.07999 * 120.00230 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00256 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00508 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47115 * 89.99720 * 22 20 18 24 24 H 1.48501 * 109.47270 * 210.00109 * 22 20 18 25 25 H 1.48499 * 109.46790 * 330.00005 * 22 20 18 26 26 N 1.31215 * 125.97517 * 180.02562 * 13 12 10 27 27 H 1.09003 * 109.47183 * 300.00313 * 1 2 3 28 28 H 1.09003 * 109.46918 * 59.99684 * 1 2 3 29 29 H 1.08996 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08999 * 110.69721 * 98.48015 * 5 3 2 31 31 H 1.08997 * 110.50608 * 335.67892 * 5 3 2 32 32 H 1.09004 * 110.75813 * 279.51449 * 6 5 3 33 33 H 1.09005 * 110.75414 * 156.33131 * 6 5 3 34 34 H 1.09002 * 110.48627 * 80.64496 * 7 6 5 35 35 H 1.09005 * 110.48530 * 203.28260 * 7 6 5 36 36 H 0.97000 * 119.99420 * 0.02562 * 12 10 8 37 37 H 1.08005 * 126.06464 * 359.97438 * 14 13 12 38 38 H 1.07999 * 126.07287 * 180.13390 * 15 14 13 39 39 H 1.08999 * 109.47263 * 245.01486 * 17 16 15 40 40 H 1.08995 * 109.47683 * 5.02396 * 17 16 15 41 41 H 0.97005 * 120.00428 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3407 2.0120 0.4904 5 6 2.2901 1.7606 -1.4524 6 6 3.6254 2.5388 -1.3494 7 6 4.4267 1.7155 -0.3107 8 6 3.3683 1.2777 0.7229 9 1 3.3587 1.9710 1.5639 10 6 3.6669 -0.1177 1.2073 11 8 4.1596 -0.9293 0.4525 12 7 3.3864 -0.4639 2.4793 13 6 3.6636 -1.7618 2.9298 14 6 4.2245 -2.7977 2.1658 15 6 4.3351 -3.8863 2.9606 16 7 3.8550 -3.5598 4.1790 17 6 3.7809 -4.4486 5.3413 18 6 4.4904 -3.8104 6.5077 19 1 4.9508 -2.8400 6.3944 20 6 4.5517 -4.4652 7.7194 21 7 3.9915 -5.6471 7.8572 22 14 5.4317 -3.6745 9.1650 23 1 4.4693 -2.8512 9.9402 24 1 5.9953 -4.7332 10.0407 25 1 6.5303 -2.8105 8.6632 26 7 3.4392 -2.2229 4.1376 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.4947 2.4138 -1.8114 31 1 2.4013 0.8973 -2.1084 32 1 3.4545 3.5534 -0.9894 33 1 4.1392 2.5530 -2.3106 34 1 4.8817 0.8448 -0.7829 35 1 5.1882 2.3356 0.1623 36 1 2.9921 0.1851 3.0828 37 1 4.5180 -2.7355 1.1283 38 1 4.7324 -4.8478 2.6704 39 1 2.7364 -4.6204 5.6013 40 1 4.2571 -5.3995 5.1026 41 1 4.0343 -6.1077 8.7099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120603359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:57 Heat of formation + Delta-G solvation = -27.644991 kcal Electronic energy + Delta-G solvation = -23443.528147 eV Core-core repulsion = 19938.321588 eV Total energy + Delta-G solvation = -3505.206559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.22318 -41.10013 -39.14329 -36.80397 -36.10143 -35.23900 -32.85439 -30.97514 -30.42720 -29.16507 -28.48240 -27.00683 -25.18299 -23.67483 -22.22755 -21.75214 -21.25358 -20.45686 -18.69265 -18.56470 -18.16609 -17.35319 -17.04251 -16.66847 -16.28565 -16.09962 -15.84689 -15.49411 -15.14653 -14.82906 -14.57668 -14.47029 -14.21482 -13.80979 -13.65564 -13.38645 -12.94144 -12.73692 -12.51566 -12.45552 -12.30925 -12.27716 -12.01255 -11.94485 -11.77639 -11.59770 -11.45037 -11.36088 -10.74005 -10.70291 -10.50997 -9.73197 -9.08783 -8.33313 -6.47863 0.99943 1.37680 1.38671 1.43527 1.50244 1.53327 2.27326 2.31894 2.45420 2.82852 2.98136 3.48524 3.61386 3.71072 4.01343 4.20784 4.27203 4.32094 4.39524 4.40178 4.47789 4.56094 4.60687 4.76599 4.82284 4.87125 4.91320 4.93591 5.01537 5.03178 5.06833 5.17789 5.21140 5.25877 5.49336 5.56250 5.79620 5.97931 6.25719 6.29085 6.37355 6.64671 7.06671 7.22173 7.23286 8.74362 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.003181 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.352970 B = 8800.067729 C = 9033.312033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.090 3.910 4 H 0.102 0.898 5 C -0.142 4.142 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.105 4.105 9 H 0.133 0.867 10 C 0.541 3.459 11 O -0.546 6.546 12 N -0.625 5.625 13 C 0.269 3.731 14 C -0.295 4.295 15 C 0.054 3.946 16 N -0.345 5.345 17 C 0.273 3.727 18 C -0.548 4.548 19 H 0.052 0.948 20 C 0.018 3.982 21 N -0.921 5.921 22 Si 0.974 3.026 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.272 1.272 26 N -0.348 5.348 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.420 0.580 37 H 0.163 0.837 38 H 0.200 0.800 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 18.138 -17.364 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.032 3.968 4 H 0.120 0.880 5 C -0.180 4.180 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.127 4.127 9 H 0.151 0.849 10 C 0.329 3.671 11 O -0.421 6.421 12 N -0.274 5.274 13 C 0.015 3.985 14 C -0.326 4.326 15 C -0.094 4.094 16 N -0.127 5.127 17 C 0.154 3.846 18 C -0.586 4.586 19 H 0.070 0.930 20 C -0.183 4.183 21 N -0.560 5.560 22 Si 0.797 3.203 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.197 1.197 26 N -0.179 5.179 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.257 0.743 37 H 0.180 0.820 38 H 0.216 0.784 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.484 17.438 -16.538 24.448 hybrid contribution 0.164 -0.109 0.502 0.539 sum -4.320 17.329 -16.036 24.002 Atomic orbital electron populations 1.22890 0.79829 1.02913 1.01164 1.88055 1.21191 1.28519 1.95105 1.23093 0.92293 0.84994 0.96453 0.88022 1.22960 0.99224 1.00304 0.95503 1.22409 0.94310 0.99025 0.99136 1.22416 0.96734 1.00448 0.95650 1.22309 0.97549 0.91620 1.01203 0.84899 1.21004 0.75693 0.91101 0.79302 1.90566 1.43656 1.52990 1.54896 1.42737 1.62486 1.08727 1.13493 1.19502 0.99276 0.88017 0.91740 1.21679 1.16133 0.92093 1.02665 1.23130 0.99506 1.01724 0.85067 1.48823 1.45805 1.07540 1.10505 1.19327 0.97342 0.87322 0.80593 1.21401 1.36306 1.04745 0.96152 0.92954 1.25764 0.95954 0.95287 1.01246 1.70000 1.44631 1.14561 1.26823 0.85321 0.78586 0.78220 0.78128 1.19688 1.19638 1.19699 1.77232 1.28149 0.94157 1.18348 0.92827 0.92151 0.90684 0.88939 0.92383 0.88664 0.90339 0.92192 0.89133 0.74264 0.81986 0.78359 0.96152 0.92475 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 113.37 1.23 1.72 16 2 O -0.41 -9.92 8.82 -148.21 -1.31 -11.22 16 3 C 0.09 1.49 3.37 31.49 0.11 1.59 16 4 H 0.10 1.08 7.80 -2.39 -0.02 1.06 16 5 C -0.14 -1.96 6.60 31.84 0.21 -1.75 16 6 C -0.11 -1.24 6.89 31.88 0.22 -1.02 16 7 C -0.11 -1.90 6.32 31.67 0.20 -1.70 16 8 C -0.11 -1.94 3.29 -10.82 -0.04 -1.98 16 9 H 0.13 1.54 8.13 -2.39 -0.02 1.52 16 10 C 0.54 16.11 5.51 87.66 0.48 16.59 16 11 O -0.55 -20.36 12.93 -2.32 -0.03 -20.39 16 12 N -0.63 -20.26 5.45 -307.52 -1.68 -21.93 16 13 C 0.27 11.41 8.11 133.33 1.08 12.49 16 14 C -0.29 -12.41 9.60 22.11 0.21 -12.20 16 15 C 0.05 2.28 11.44 83.52 0.96 3.24 16 16 N -0.34 -16.91 3.67 -351.84 -1.29 -18.20 16 17 C 0.27 14.59 6.26 85.63 0.54 15.13 16 18 C -0.55 -31.55 9.24 25.60 0.24 -31.32 16 19 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 20 C 0.02 0.99 5.46 84.65 0.46 1.46 16 21 N -0.92 -52.92 13.29 21.45 0.28 -52.63 16 22 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 N -0.35 -16.87 12.42 -54.45 -0.68 -17.55 16 27 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.06 1.39 6.93 -2.39 -0.02 1.38 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.42 10.97 8.81 -92.71 -0.82 10.15 16 37 H 0.16 6.73 5.92 -2.91 -0.02 6.71 16 38 H 0.20 6.67 8.06 -2.91 -0.02 6.64 16 39 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 41 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -74.85 343.37 3.45 -71.40 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.22 Total: 22.21 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.90 Total: 2.26 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -3.36 Total: -110.32 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.34 Total: -31.61 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -74.85 3.45 -71.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120603359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.754 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds