Wall clock time and date at job start Tue Mar 31 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00123 * 2 1 4 4 N 1.46499 * 109.47155 * 180.02562 * 3 2 1 5 5 C 1.35039 * 124.88317 * 0.02562 * 4 3 2 6 6 C 1.35367 * 107.22469 * 179.76557 * 5 4 3 7 7 C 1.41496 * 105.50483 * 0.35475 * 6 5 4 8 8 C 1.47711 * 126.51651 * 179.90288 * 7 6 5 9 9 O 1.21563 * 120.00321 * 6.24441 * 8 7 6 10 10 N 1.34783 * 119.99671 * 186.24795 * 8 7 6 11 11 C 1.46917 * 120.63231 * 354.57720 * 10 8 7 12 12 C 1.53619 * 108.54620 * 126.37174 * 11 10 8 13 13 C 1.53033 * 109.24441 * 54.85219 * 12 11 10 14 14 C 1.53048 * 109.53902 * 298.51582 * 13 12 11 15 15 H 1.09001 * 109.49341 * 301.41307 * 14 13 12 16 16 C 1.50701 * 109.52235 * 181.33270 * 14 13 12 17 17 H 1.08000 * 120.00249 * 0.14590 * 16 14 13 18 18 C 1.37880 * 119.99569 * 180.14422 * 16 14 13 19 19 N 1.31510 * 119.99944 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99800 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46950 * 60.00176 * 20 18 16 22 22 H 1.48503 * 109.46957 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47115 * 300.00024 * 20 18 16 24 24 C 1.46926 * 120.62425 * 174.85645 * 10 8 7 25 25 N 1.28464 * 124.88466 * 180.02562 * 4 3 2 26 26 H 1.09002 * 109.47392 * 59.99855 * 1 2 3 27 27 H 1.09004 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47026 * 300.00281 * 1 2 3 29 29 H 1.09000 * 109.47241 * 59.99731 * 3 2 1 30 30 H 1.08996 * 109.46750 * 299.99709 * 3 2 1 31 31 H 1.08001 * 126.38807 * 0.03325 * 5 4 3 32 32 H 1.08002 * 127.24424 * 180.24161 * 6 5 4 33 33 H 1.09010 * 109.58492 * 246.20130 * 11 10 8 34 34 H 1.09001 * 109.58708 * 6.62460 * 11 10 8 35 35 H 1.09007 * 109.63473 * 294.86286 * 12 11 10 36 36 H 1.09007 * 109.45964 * 174.74023 * 12 11 10 37 37 H 1.09004 * 109.46414 * 178.49556 * 13 12 11 38 38 H 1.09002 * 109.46235 * 58.53686 * 13 12 11 39 39 H 0.97002 * 119.99792 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.59497 * 353.37125 * 24 10 8 41 41 H 1.09001 * 109.58552 * 113.80512 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1897 -0.0006 5 6 4.1531 0.0245 -0.0016 6 6 5.4714 0.3319 -0.0072 7 6 5.5300 1.7457 -0.0010 8 6 6.7526 2.5746 -0.0017 9 8 7.8426 2.0502 -0.1225 10 7 6.6596 3.9126 0.1317 11 6 5.3474 4.5727 0.1597 12 6 5.2636 5.4401 1.4248 13 6 6.4522 6.4036 1.4553 14 6 7.7571 5.6054 1.5044 15 1 7.7594 4.9662 2.3873 16 6 8.9260 6.5545 1.5674 17 1 8.7559 7.6210 1.5744 18 6 10.2126 6.0612 1.6162 19 7 10.4197 4.7625 1.6073 20 14 11.6616 7.2376 1.6936 21 1 11.5528 8.0773 2.9135 22 1 12.9272 6.4619 1.7372 23 1 11.6567 8.1087 0.4910 24 6 7.8689 4.7393 0.2458 25 7 4.2863 2.1822 -0.0003 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.7266 -0.9678 -0.0026 32 1 6.3032 -0.3569 -0.0131 33 1 5.2348 5.1999 -0.7248 34 1 4.5597 3.8194 0.1787 35 1 5.2895 4.8025 2.3085 36 1 4.3340 6.0093 1.4140 37 1 6.3819 7.0393 2.3380 38 1 6.4397 7.0242 0.5593 39 1 11.3248 4.4155 1.6420 40 1 8.7455 4.0961 0.3216 41 1 7.9577 5.3798 -0.6317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347815560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:16 Heat of formation + Delta-G solvation = 21.817061 kcal Electronic energy + Delta-G solvation = -23855.530297 eV Core-core repulsion = 20352.468573 eV Total energy + Delta-G solvation = -3503.061724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.57574 -39.07037 -38.44361 -36.49570 -33.41090 -32.64578 -31.64904 -30.66957 -29.56154 -27.89136 -26.17744 -24.95442 -24.63642 -22.13383 -21.71780 -21.16860 -19.62999 -18.51719 -17.59648 -17.14800 -16.85932 -16.54821 -15.86249 -15.36991 -15.07615 -14.62630 -14.35576 -14.10775 -13.67579 -13.45189 -13.17014 -12.97694 -12.76651 -12.59899 -12.46440 -12.09155 -11.99251 -11.77203 -11.21525 -10.89884 -10.62581 -10.61680 -10.40379 -10.15837 -9.88323 -9.60159 -9.36899 -9.15564 -9.01406 -8.91357 -8.78554 -8.35091 -7.59071 -5.92362 -4.01118 1.78355 1.92196 2.37584 3.28105 3.36885 3.42594 3.44050 3.84124 4.02507 4.40894 4.48912 4.55561 4.63433 4.76361 4.77260 4.95132 5.07190 5.32127 5.37624 5.67695 5.73371 5.81362 5.91109 5.97562 6.09469 6.27555 6.37521 6.45968 6.62819 6.71607 6.81224 6.91307 7.00906 7.08634 7.27500 7.45396 7.72186 7.96686 8.02546 8.09387 8.40643 8.47026 8.96606 9.04288 9.63965 11.13008 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032361 B = 0.003608 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.019600 B = 7758.059082 C = 8446.428933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.398 6.398 3 C 0.306 3.694 4 N -0.303 5.303 5 C 0.003 3.997 6 C -0.187 4.187 7 C 0.014 3.986 8 C 0.588 3.412 9 O -0.531 6.531 10 N -0.590 5.590 11 C 0.076 3.924 12 C -0.129 4.129 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.893 3.107 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.113 3.887 25 N -0.264 5.264 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.181 0.819 32 H 0.163 0.837 33 H 0.054 0.946 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.264 0.736 40 H 0.122 0.878 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.694 -8.633 -3.680 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.316 6.316 3 C 0.146 3.854 4 N -0.090 5.090 5 C -0.140 4.140 6 C -0.215 4.215 7 C -0.147 4.147 8 C 0.372 3.628 9 O -0.406 6.406 10 N -0.321 5.321 11 C -0.049 4.049 12 C -0.168 4.168 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.046 0.954 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.007 4.007 25 N -0.099 5.099 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.198 0.802 32 H 0.181 0.819 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.627 -8.249 -3.746 23.448 hybrid contribution 0.927 0.174 0.085 0.947 sum -20.700 -8.075 -3.661 22.519 Atomic orbital electron populations 1.22817 0.77611 1.04081 1.01003 1.87714 1.21872 1.26276 1.95707 1.22183 0.74802 0.85417 1.03007 1.45549 1.06212 1.04457 1.52830 1.22750 0.91822 0.92633 1.06771 1.21820 0.96362 0.94533 1.08777 1.22464 0.90906 0.94160 1.07180 1.17023 0.85937 0.81838 0.77994 1.90792 1.26851 1.72304 1.50634 1.48347 1.09073 1.05351 1.69375 1.22657 0.86731 0.98107 0.97371 1.21973 0.98629 0.98349 0.97814 1.21642 0.95530 0.97413 1.00315 1.18961 0.91290 0.93712 0.93858 0.95356 1.21050 0.90466 0.92718 1.51712 0.92442 1.25058 0.99007 0.95081 0.94900 1.69877 1.21523 1.11161 1.49233 0.86651 0.81864 0.80908 0.78524 1.20344 1.21267 1.20278 1.22325 0.86104 0.93884 0.98386 1.73237 1.00334 1.14105 1.22208 0.93028 0.88301 0.92994 0.89624 0.89680 0.80165 0.81948 0.92761 0.85721 0.92506 0.92652 0.93261 0.93302 0.92588 0.85984 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.15 11.01 101.05 1.11 1.26 16 2 O -0.40 -2.96 9.75 -35.23 -0.34 -3.30 16 3 C 0.31 2.48 7.53 59.85 0.45 2.93 16 4 N -0.30 -3.83 3.70 -66.12 -0.24 -4.07 16 5 C 0.00 0.04 10.83 -17.16 -0.19 -0.15 16 6 C -0.19 -2.92 10.81 -39.37 -0.43 -3.35 16 7 C 0.01 0.26 6.90 -82.77 -0.57 -0.31 16 8 C 0.59 13.30 7.70 -12.39 -0.10 13.21 16 9 O -0.53 -13.85 16.37 5.31 0.09 -13.77 16 10 N -0.59 -13.16 2.97 -173.67 -0.52 -13.67 16 11 C 0.08 1.38 6.36 -3.49 -0.02 1.36 16 12 C -0.13 -2.33 6.10 -26.39 -0.16 -2.49 16 13 C -0.11 -2.36 5.11 -26.69 -0.14 -2.49 16 14 C 0.04 1.06 2.25 -91.65 -0.21 0.85 16 15 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 16 C -0.52 -14.54 8.57 -34.44 -0.29 -14.83 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -26.31 11.39 55.43 0.63 -25.68 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.11 2.90 5.38 -3.71 -0.02 2.88 16 25 N -0.26 -4.15 8.31 33.42 0.28 -3.88 16 26 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 27 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.18 1.71 7.71 -52.49 -0.40 1.30 16 32 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 33 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 34 H 0.13 2.10 3.70 -117.83 -0.44 1.66 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.12 3.60 5.15 -51.93 -0.27 3.33 16 41 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -34.31 335.55 -6.87 -41.18 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.15 Total: 0.90 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.65 Total: 0.54 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.15 Total: -47.31 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.26 Total: -17.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.31 -6.87 -41.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347815560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.993 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds