Wall clock time and date at job start Tue Mar 31 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00123 * 2 1 4 4 N 1.46499 * 109.47155 * 180.02562 * 3 2 1 5 5 C 1.35039 * 124.88317 * 0.02562 * 4 3 2 6 6 C 1.35367 * 107.22469 * 179.76557 * 5 4 3 7 7 C 1.41496 * 105.50483 * 0.35475 * 6 5 4 8 8 C 1.47711 * 126.51651 * 179.90288 * 7 6 5 9 9 O 1.21563 * 120.00321 * 6.24441 * 8 7 6 10 10 N 1.34783 * 119.99671 * 186.24795 * 8 7 6 11 11 C 1.46917 * 120.63231 * 354.57720 * 10 8 7 12 12 C 1.53619 * 108.54620 * 126.37174 * 11 10 8 13 13 C 1.53033 * 109.24441 * 54.85219 * 12 11 10 14 14 C 1.53048 * 109.53902 * 298.51582 * 13 12 11 15 15 H 1.09001 * 109.49341 * 301.41307 * 14 13 12 16 16 C 1.50701 * 109.52235 * 181.33270 * 14 13 12 17 17 H 1.08000 * 120.00249 * 0.14590 * 16 14 13 18 18 C 1.37880 * 119.99569 * 180.14422 * 16 14 13 19 19 N 1.31510 * 119.99944 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99800 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46950 * 60.00176 * 20 18 16 22 22 H 1.48503 * 109.46957 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47115 * 300.00024 * 20 18 16 24 24 C 1.46926 * 120.62425 * 174.85645 * 10 8 7 25 25 N 1.28464 * 124.88466 * 180.02562 * 4 3 2 26 26 H 1.09002 * 109.47392 * 59.99855 * 1 2 3 27 27 H 1.09004 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47026 * 300.00281 * 1 2 3 29 29 H 1.09000 * 109.47241 * 59.99731 * 3 2 1 30 30 H 1.08996 * 109.46750 * 299.99709 * 3 2 1 31 31 H 1.08001 * 126.38807 * 0.03325 * 5 4 3 32 32 H 1.08002 * 127.24424 * 180.24161 * 6 5 4 33 33 H 1.09010 * 109.58492 * 246.20130 * 11 10 8 34 34 H 1.09001 * 109.58708 * 6.62460 * 11 10 8 35 35 H 1.09007 * 109.63473 * 294.86286 * 12 11 10 36 36 H 1.09007 * 109.45964 * 174.74023 * 12 11 10 37 37 H 1.09004 * 109.46414 * 178.49556 * 13 12 11 38 38 H 1.09002 * 109.46235 * 58.53686 * 13 12 11 39 39 H 0.97002 * 119.99792 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.59497 * 353.37125 * 24 10 8 41 41 H 1.09001 * 109.58552 * 113.80512 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1897 -0.0006 5 6 4.1531 0.0245 -0.0016 6 6 5.4714 0.3319 -0.0072 7 6 5.5300 1.7457 -0.0010 8 6 6.7526 2.5746 -0.0017 9 8 7.8426 2.0502 -0.1225 10 7 6.6596 3.9126 0.1317 11 6 5.3474 4.5727 0.1597 12 6 5.2636 5.4401 1.4248 13 6 6.4522 6.4036 1.4553 14 6 7.7571 5.6054 1.5044 15 1 7.7594 4.9662 2.3873 16 6 8.9260 6.5545 1.5674 17 1 8.7559 7.6210 1.5744 18 6 10.2126 6.0612 1.6162 19 7 10.4197 4.7625 1.6073 20 14 11.6616 7.2376 1.6936 21 1 11.5528 8.0773 2.9135 22 1 12.9272 6.4619 1.7372 23 1 11.6567 8.1087 0.4910 24 6 7.8689 4.7393 0.2458 25 7 4.2863 2.1822 -0.0003 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.7266 -0.9678 -0.0026 32 1 6.3032 -0.3569 -0.0131 33 1 5.2348 5.1999 -0.7248 34 1 4.5597 3.8194 0.1787 35 1 5.2895 4.8025 2.3085 36 1 4.3340 6.0093 1.4140 37 1 6.3819 7.0393 2.3380 38 1 6.4397 7.0242 0.5593 39 1 11.3248 4.4155 1.6420 40 1 8.7455 4.0961 0.3216 41 1 7.9577 5.3798 -0.6317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347815560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:16 Heat of formation + Delta-G solvation = -2.643654 kcal Electronic energy + Delta-G solvation = -23856.590993 eV Core-core repulsion = 20352.468573 eV Total energy + Delta-G solvation = -3504.122420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.73005 -40.75569 -39.01086 -38.30409 -35.34655 -33.88064 -33.32953 -31.98225 -31.30365 -28.67536 -27.14319 -26.77068 -26.02448 -23.64763 -23.36378 -22.27579 -21.27959 -20.03881 -18.82522 -18.40939 -17.87102 -17.66088 -17.30371 -16.78950 -16.44724 -16.32032 -15.60259 -15.45857 -15.10983 -15.05005 -14.53362 -14.30040 -14.12575 -13.96076 -13.85765 -13.49140 -13.42788 -12.86152 -12.82749 -12.45176 -12.39050 -12.26934 -12.11976 -11.68378 -11.27614 -11.25759 -11.09203 -10.96469 -10.61104 -10.49657 -10.28667 -10.05050 -9.39517 -8.09679 -6.27559 0.46609 1.09166 1.18477 1.41447 1.43938 1.52195 2.18557 2.40565 2.43839 2.68801 3.17867 3.36987 3.86218 3.97264 4.04702 4.07793 4.20060 4.22470 4.38972 4.49257 4.57869 4.60268 4.67689 4.74084 4.78623 4.86179 4.91387 4.94727 5.07930 5.22278 5.25894 5.36066 5.39214 5.55989 5.64661 5.75510 5.84587 5.93114 5.98406 6.33146 6.59907 6.84440 6.91393 7.25820 7.42579 8.94087 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032361 B = 0.003608 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.019600 B = 7758.059082 C = 8446.428933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.414 6.414 3 C 0.297 3.703 4 N -0.289 5.289 5 C 0.027 3.973 6 C -0.207 4.207 7 C -0.024 4.024 8 C 0.579 3.421 9 O -0.584 6.584 10 N -0.596 5.596 11 C 0.073 3.927 12 C -0.120 4.120 13 C -0.105 4.105 14 C 0.040 3.960 15 H -0.015 1.015 16 C -0.537 4.537 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.917 5.917 20 Si 0.962 3.038 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.267 1.267 24 C 0.125 3.875 25 N -0.258 5.258 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.218 0.782 32 H 0.161 0.839 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.261 0.739 40 H 0.078 0.922 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.262 -8.094 -3.952 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.332 6.332 3 C 0.139 3.861 4 N -0.077 5.077 5 C -0.117 4.117 6 C -0.235 4.235 7 C -0.182 4.182 8 C 0.366 3.634 9 O -0.463 6.463 10 N -0.326 5.326 11 C -0.050 4.050 12 C -0.159 4.159 13 C -0.143 4.143 14 C 0.021 3.979 15 H 0.003 0.997 16 C -0.576 4.576 17 H 0.082 0.918 18 C -0.191 4.191 19 N -0.555 5.555 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.214 1.214 23 H -0.192 1.192 24 C 0.003 3.997 25 N -0.095 5.095 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.234 0.766 32 H 0.178 0.822 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.266 -7.680 -4.016 26.711 hybrid contribution 1.844 -0.081 0.167 1.853 sum -23.422 -7.761 -3.849 24.973 Atomic orbital electron populations 1.23069 0.75558 1.05243 1.02226 1.87695 1.23897 1.25708 1.95944 1.22643 0.71877 0.86455 1.05148 1.45997 1.07952 1.03819 1.49954 1.23134 0.90434 0.93935 1.04186 1.21970 0.98143 0.93417 1.09928 1.21824 0.90392 0.94664 1.11318 1.17626 0.86935 0.82061 0.76747 1.90739 1.29314 1.73284 1.52953 1.48387 1.09565 1.05463 1.69202 1.22976 0.85014 0.98780 0.98198 1.21930 0.99132 0.97732 0.97060 1.21537 0.94244 0.97579 1.00931 1.18892 0.93726 0.93380 0.91914 0.99659 1.21483 0.91491 0.93361 1.51224 0.91769 1.25951 1.02120 0.96568 0.94508 1.70088 1.21733 1.13294 1.50410 0.85558 0.77972 0.78711 0.79115 1.19189 1.21404 1.19160 1.21801 0.86531 0.93287 0.98059 1.72940 0.99506 1.15111 1.21985 0.91722 0.87258 0.91842 0.87582 0.87379 0.76576 0.82182 0.91240 0.83718 0.93721 0.87962 0.92740 0.92429 0.93038 0.90372 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 113.37 1.25 1.36 16 2 O -0.41 -4.45 9.75 -148.98 -1.45 -5.90 16 3 C 0.30 3.54 7.53 127.77 0.96 4.51 16 4 N -0.29 -6.41 3.70 -463.58 -1.71 -8.12 16 5 C 0.03 0.61 10.83 83.54 0.90 1.51 16 6 C -0.21 -6.43 10.81 22.41 0.24 -6.19 16 7 C -0.02 -0.88 6.90 42.45 0.29 -0.59 16 8 C 0.58 27.61 7.70 86.75 0.67 28.28 16 9 O -0.58 -32.90 16.37 -3.92 -0.06 -32.96 16 10 N -0.60 -27.50 2.97 -821.64 -2.44 -29.94 16 11 C 0.07 2.56 6.36 86.51 0.55 3.11 16 12 C -0.12 -4.10 6.10 30.81 0.19 -3.91 16 13 C -0.11 -4.38 5.11 30.62 0.16 -4.22 16 14 C 0.04 2.15 2.25 -11.46 -0.03 2.13 16 15 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 16 C -0.54 -30.74 8.57 25.60 0.22 -30.52 16 17 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 18 C 0.01 0.46 5.30 84.66 0.45 0.91 16 19 N -0.92 -57.75 11.39 21.45 0.24 -57.50 16 20 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.13 6.78 5.38 86.36 0.46 7.24 16 25 N -0.26 -7.64 8.31 -48.18 -0.40 -8.04 16 26 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.06 0.07 8.14 -2.39 -0.02 0.06 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.22 3.24 7.71 -2.91 -0.02 3.22 16 32 H 0.16 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.15 4.57 3.70 -87.64 -0.32 4.24 16 35 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 37 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.08 4.97 5.15 -2.39 -0.01 4.95 16 41 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -80.60 335.55 3.23 -77.36 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.71 Total: 13.98 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 6.32 Total: 3.61 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -4.31 Total: -103.61 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.52 Total: -38.87 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -80.60 3.23 -77.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347815560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.719 kcal (2) G-P(sol) polarization free energy of solvation -80.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds